View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10261A_low_495 (Length: 203)
Name: NF10261A_low_495
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_495 |
 | |
|
| [»] chr5 (4 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
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|
| [»] chr7 (4 HSPs) |
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|
| [»] chr6 (1 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0510 (2 HSPs) |
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| [»] scaffold0039 (1 HSPs) |
| | |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 3e-99; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 2963891 - 2964093
Alignment:
| Q |
1 |
aagggattgccaaggtatgtgtttattgcctcacggtcaaaccggatagttcgacccctcacaaaagtttcgaaggtaaatgggtcagtgtgtggatttt |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2963891 |
aagggattgccaaggtatgtatttattgcctcacggtcaaaccggatagttcgacccctcacaaaagtttcgaatgtaaatgggtcagtgtgtggatttt |
2963990 |
T |
|
| Q |
101 |
caggtagggcattggcataaaactcacgcaccaactcagcattaatatctgttatgggttggaggagtcgttcccatccttgatcgagtaaaagtttggc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2963991 |
caggtagggcattggcataaaactcacgcactaactcggcattaatatctgttatgggttgaaggagtcgttcccatccttgatcgagtaaaagtttggc |
2964090 |
T |
|
| Q |
201 |
aat |
203 |
Q |
| |
|
||| |
|
|
| T |
2964091 |
aat |
2964093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 29977905 - 29978107
Alignment:
| Q |
1 |
aagggattgccaaggtatgtgtttattgcctcacggtcaaaccggatagttcgacccctcacaaaagtttcgaaggtaaatgggtcagtgtgtggatttt |
100 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29977905 |
aaggggttgccaaggtatgtatttattgcctcacggtcaaaccggatagttcgacccctcacaaaagtttcgaatgtaaatgggtcagtgtgtggatttt |
29978004 |
T |
|
| Q |
101 |
caggtagggcattggcataaaactcacgcaccaactcagcattaatatctgttatgggttggaggagtcgttcccatccttgatcgagtaaaagtttggc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29978005 |
caggtagggcattggcataaaactcacgcactaactcggcattaatatctgttatgggttgaaggagtcgttcccatccttgatcgagtaaaagtttggc |
29978104 |
T |
|
| Q |
201 |
aat |
203 |
Q |
| |
|
||| |
|
|
| T |
29978105 |
aat |
29978107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 30018737 - 30018535
Alignment:
| Q |
1 |
aagggattgccaaggtatgtgtttattgcctcacggtcaaaccggatagttcgacccctcacaaaagtttcgaaggtaaatgggtcagtgtgtggatttt |
100 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30018737 |
aaggggttgccaaggtatgtatttattgcctcacggtcaaaccggatagttcgacccctcacaaaagtttcgaatgtaaatgggtcagtgtgtggatttt |
30018638 |
T |
|
| Q |
101 |
caggtagggcattggcataaaactcacgcaccaactcagcattaatatctgttatgggttggaggagtcgttcccatccttgatcgagtaaaagtttggc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30018637 |
caggtagggcattggcataaaactcacgcactaactcggcattaatatctgttatgggttgaaggagtcgttcccatccttgatcgagtaaaagtttggc |
30018538 |
T |
|
| Q |
201 |
aat |
203 |
Q |
| |
|
||| |
|
|
| T |
30018537 |
aat |
30018535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 7 - 200
Target Start/End: Original strand, 22354812 - 22355005
Alignment:
| Q |
7 |
ttgccaaggtatgtgtttattgcctcacggtcaaaccggatagttcgacccctcacaaaagtttcgaaggtaaatgggtcagtgtgtggattttcaggta |
106 |
Q |
| |
|
||||||||||| || || |||||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||||||| ||| |||||||| | |
|
|
| T |
22354812 |
ttgccaaggtaggtattgattgcctcacggtcaaaccggatagtacgacccctaacaaaagtttcaaaggtgaatgggtcagtgtatgggttttcaggga |
22354911 |
T |
|
| Q |
107 |
gggcattggcataaaactcacgcaccaactcagcattaatatctgttatgggttggaggagtcgttcccatccttgatcgagtaaaagtttggc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
22354912 |
gggcattggcataaaactcacgcaccaactcagcattaatatcggttaggggtttgaggagtcgttcccaccctcgatcgagtaaaagtttggc |
22355005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 179; Significance: 8e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 8009597 - 8009395
Alignment:
| Q |
1 |
aagggattgccaaggtatgtgtttattgcctcacggtcaaaccggatagttcgacccctcacaaaagtttcgaaggtaaatgggtcagtgtgtggatttt |
100 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8009597 |
aaggggttgccaaggtatgtatttattgcctcacggtcaaaccggatagttcgacccctcacaaaagtttcgaatgtaaatgggtcagtgtgtggatttt |
8009498 |
T |
|
| Q |
101 |
caggtagggcattggcataaaactcacgcaccaactcagcattaatatctgttatgggttggaggagtcgttcccatccttgatcgagtaaaagtttggc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8009497 |
caggtagggcattggcataaaactcacgcactaactcggcattaatatctgttatgggttgaaggagtcgttcccatccttgatcgagtaaaagtttggc |
8009398 |
T |
|
| Q |
201 |
aat |
203 |
Q |
| |
|
||| |
|
|
| T |
8009397 |
aat |
8009395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 179; Significance: 8e-97; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 48349759 - 48349557
Alignment:
| Q |
1 |
aagggattgccaaggtatgtgtttattgcctcacggtcaaaccggatagttcgacccctcacaaaagtttcgaaggtaaatgggtcagtgtgtggatttt |
100 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
48349759 |
aaggggttgccaaggtatgtatttattgcctcacggtcaaaccggatagttcgacccctcacaaaagtttcgaatgtaaatgggtcagtgtgtggatttt |
48349660 |
T |
|
| Q |
101 |
caggtagggcattggcataaaactcacgcaccaactcagcattaatatctgttatgggttggaggagtcgttcccatccttgatcgagtaaaagtttggc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48349659 |
caggtagggcattggcataaaactcacgcactaactcggcattaatatctgttatgggttgaaggagtcgttcccatccttgatcgagtaaaagtttggc |
48349560 |
T |
|
| Q |
201 |
aat |
203 |
Q |
| |
|
||| |
|
|
| T |
48349559 |
aat |
48349557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 7 - 198
Target Start/End: Complemental strand, 1945405 - 1945202
Alignment:
| Q |
7 |
ttgccaaggtatgtgtttattgcctcacggtcaaaccggatagttcgacccctcacaaaagtttcgaaggta------------aatgggtcagtgtgtg |
94 |
Q |
| |
|
||||||||||| ||||| ||||||||||| |||||||||||||| |||||||| ||||||||||| |||| | |||||||||||||||| |
|
|
| T |
1945405 |
ttgccaaggtaggtgttgattgcctcacgatcaaaccggatagtgcgacccctaacaaaagtttcaaaggaagtttcaaaggtgaatgggtcagtgtgtg |
1945306 |
T |
|
| Q |
95 |
gattttcaggtagggcattggcataaaactcacgcaccaactcagcattaatatctgttatgggttggaggagtcgttcccatccttgatcgagtaaaag |
194 |
Q |
| |
|
| |||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||| ||||||| ||||||||| |
|
|
| T |
1945305 |
ggttttcagggagggcattggcattaaactcacgcaccaactcagcattaatatcggttaggggtttgaggagtcgttcccacccttgattgagtaaaag |
1945206 |
T |
|
| Q |
195 |
tttg |
198 |
Q |
| |
|
|||| |
|
|
| T |
1945205 |
tttg |
1945202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 111 - 203
Target Start/End: Complemental strand, 5052486 - 5052394
Alignment:
| Q |
111 |
attggcataaaactcacgcaccaactcagcattaatatctgttatgggttggaggagtcgttcccatccttgatcgagtaaaagtttggcaat |
203 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5052486 |
attggcataaaactcacgcactaactcggcattaatatctgttatgggttgaaggagtcgttcccatccttgatcgagtaaaagtttggcaat |
5052394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 7 - 104
Target Start/End: Original strand, 1944620 - 1944717
Alignment:
| Q |
7 |
ttgccaaggtatgtgtttattgcctcacggtcaaaccggatagttcgacccctcacaaaagtttcgaaggtaaatgggtcagtgtgtggattttcagg |
104 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||| |||||| |||||||| ||||||||||| ||||| |||||||||||||||| |||||||| |
|
|
| T |
1944620 |
ttgccaaggtaggtgttgattgcctcacggtcaaaccagatagtgcgacccctaacaaaagtttcaaaggtgaatgggtcagtgtgtgagttttcagg |
1944717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 179; Significance: 8e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 34652794 - 34652996
Alignment:
| Q |
1 |
aagggattgccaaggtatgtgtttattgcctcacggtcaaaccggatagttcgacccctcacaaaagtttcgaaggtaaatgggtcagtgtgtggatttt |
100 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34652794 |
aaggggttgccaaggtatgtatttattgcctcacggtcaaaccggatagttcgaccccttacaaaagtttcgaatgtaaatgggtcagtgtgtggatttt |
34652893 |
T |
|
| Q |
101 |
caggtagggcattggcataaaactcacgcaccaactcagcattaatatctgttatgggttggaggagtcgttcccatccttgatcgagtaaaagtttggc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34652894 |
caggtagggcattggcataaaactcacgcactaactcggcattaatatctgttatgggttggaggagtcgttcccatccttgatcgagtaaaagtttggc |
34652993 |
T |
|
| Q |
201 |
aat |
203 |
Q |
| |
|
||| |
|
|
| T |
34652994 |
aat |
34652996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 176; Significance: 5e-95; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 39055954 - 39055751
Alignment:
| Q |
1 |
aagggattgccaaggtatgtgtttattgcctcacgg-tcaaaccggatagttcgacccctcacaaaagtttcgaaggtaaatgggtcagtgtgtggattt |
99 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
39055954 |
aagggattgccaaggtatgtatttattgcctcacgggtcaaaccggatagttcgacccctcacaaaagtttcgaatgtaaatgggtcagtgtgtggattt |
39055855 |
T |
|
| Q |
100 |
tcaggtagggcattggcataaaactcacgcaccaactcagcattaatatctgttatgggttggaggagtcgttcccatccttgatcgagtaaaagtttgg |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39055854 |
tcaggtagggcattggcataaaactcacgcactaactcggcattaatatctgttatgggttgaaggagtcgttcccatccttgatcgagtaaaagtttgg |
39055755 |
T |
|
| Q |
200 |
caat |
203 |
Q |
| |
|
|||| |
|
|
| T |
39055754 |
caat |
39055751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 7 - 203
Target Start/End: Original strand, 41295064 - 41295260
Alignment:
| Q |
7 |
ttgccaaggtatgtgtttattgcctcacggtcaaaccggatagttcgacccctcacaaaagtttcgaaggtaaatgggtcagtgtgtggattttcaggta |
106 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||||| |||||||| | |
|
|
| T |
41295064 |
ttgccaaggtagttgttgattgcctcacggtcaaaccggatagtgcgacccctaacaaaagtttcaaaggtgaatgggtcagtgtgtgggttttcaggga |
41295163 |
T |
|
| Q |
107 |
gggcattggcataaaactcacgcaccaactcagcattaatatctgttatgggttggaggagtcgttcccatccttgatcgagtaaaagtttggcaat |
203 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
41295164 |
gagcattggcataaaactcacgcaccaactcagcattaatatcggttaggggtttgaggagtcgatcccacccttgatcgagtaaaagtttggcaat |
41295260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 7 - 203
Target Start/End: Complemental strand, 41301770 - 41301574
Alignment:
| Q |
7 |
ttgccaaggtatgtgtttattgcctcacggtcaaaccggatagttcgacccctcacaaaagtttcgaaggtaaatgggtcagtgtgtggattttcaggta |
106 |
Q |
| |
|
||||||||||| ||||| || ||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||| ||||||||| |||||||| | |
|
|
| T |
41301770 |
ttgccaaggtaggtgttgatggcctcacggtcaaaccggatagtgcgacccctaacaaaagtttcaaaggtgaatgggttagtgtgtgggttttcaggaa |
41301671 |
T |
|
| Q |
107 |
gggcattggcataaaactcacgcaccaactcagcattaatatctgttatgggttggaggagtcgttcccatccttgatcgagtaaaagtttggcaat |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
41301670 |
gggcattggcataaaactcacgcaccaactcagcattaatatcggttaggggttttaggagtcgatcccacccttgatcgagtaaaagtttggcaat |
41301574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0510 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: scaffold0510
Description:
Target: scaffold0510; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 7 - 203
Target Start/End: Complemental strand, 11556 - 11360
Alignment:
| Q |
7 |
ttgccaaggtatgtgtttattgcctcacggtcaaaccggatagttcgacccctcacaaaagtttcgaaggtaaatgggtcagtgtgtggattttcaggta |
106 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||||| |||||||| | |
|
|
| T |
11556 |
ttgccaaggtagttgttgattgcctcacggtcaaaccggatagtgcgacccctaacaaaagtttcaaaggtgaatgggtcagtgtgtgggttttcaggga |
11457 |
T |
|
| Q |
107 |
gggcattggcataaaactcacgcaccaactcagcattaatatctgttatgggttggaggagtcgttcccatccttgatcgagtaaaagtttggcaat |
203 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
11456 |
gagcattggcataaaactcacgcaccaactcagcattaatatcggttaggggtttgaggagtcgatcccacccttgatcgagtaaaagtttggcaat |
11360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0510; HSP #2
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 7 - 203
Target Start/End: Complemental strand, 5144 - 4948
Alignment:
| Q |
7 |
ttgccaaggtatgtgtttattgcctcacggtcaaaccggatagttcgacccctcacaaaagtttcgaaggtaaatgggtcagtgtgtggattttcaggta |
106 |
Q |
| |
|
||||||||||| ||||| || ||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||| ||||||||| |||||||| | |
|
|
| T |
5144 |
ttgccaaggtaggtgttgatggcctcacggtcaaaccggatagtgcgacccctaacaaaagtttcaaaggtgaatgggttagtgtgtgggttttcaggaa |
5045 |
T |
|
| Q |
107 |
gggcattggcataaaactcacgcaccaactcagcattaatatctgttatgggttggaggagtcgttcccatccttgatcgagtaaaagtttggcaat |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
5044 |
gggcattggcataaaactcacgcaccaactcagcattaatatcggttaggggtttcaggagtcgatcccacccttgatcgagtaaaagtttggcaat |
4948 |
T |
|
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Target: scaffold0039 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 200
Target Start/End: Complemental strand, 7646 - 7534
Alignment:
| Q |
88 |
gtgtgtggattttcaggtagggcattggcataaaactcacgcaccaactcagcattaatatctgttatgggttggaggagtcgttcccatccttgatcga |
187 |
Q |
| |
|
|||||||| |||||| | |||||||| || |||||||||| ||| | |||| |||| ||||| |||| || |||||| ||| |||| |||||||||| |
|
|
| T |
7646 |
gtgtgtgggttttcaaggagggcattagcgtaaaactcacacacaagctcaacattgatatcggttagagggctgaggagccgtccccacccttgatcga |
7547 |
T |
|
| Q |
188 |
gtaaaagtttggc |
200 |
Q |
| |
|
||||||||||||| |
|
|
| T |
7546 |
gtaaaagtttggc |
7534 |
T |
|
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