View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10261A_low_498 (Length: 201)
Name: NF10261A_low_498
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_498 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 34683397 - 34683214
Alignment:
| Q |
18 |
ttttttgtgtgtttggataagattttaataaattctgaagctctagggctgcattattcatctctatgactagaatatcaagtttgtttgattttttcat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34683397 |
ttttttgtgtgtttggataagattttaataaattctgaagctctagggctgcattattcatctctatgactagaatatcaagtttgtttgattttttcat |
34683298 |
T |
|
| Q |
118 |
tttctttattgtacttgccaactctcttaggacatttgcagagttgtctcccactttcatagaggttctgctcataatcttcat |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34683297 |
tttctttattgtacttgccaactctcttaggacatttgcagagttgtctcccacttttatagaggttctgctcataatcttcat |
34683214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 23 - 199
Target Start/End: Complemental strand, 34699611 - 34699435
Alignment:
| Q |
23 |
tgtgtgtttggataagattttaataaattctgaagctctagggctgcattattcatctctatgactagaatatcaagtttgtttgattttttcattttct |
122 |
Q |
| |
|
|||||||||| ||| |||||||||||||| || |||||| | | ||| ||||||||||| |||| | | |||||||||| ||||| ||| |||| || | |
|
|
| T |
34699611 |
tgtgtgtttgaatatgattttaataaattttgtagctcttgtgtagcaatattcatctctttgaccaaactatcaagtttctttgactttgtcatattat |
34699512 |
T |
|
| Q |
123 |
ttattgtacttgccaactctcttaggacatttgcagagttgtctcccactttcatagaggttctgctcataatcttc |
199 |
Q |
| |
|
| |||||| ||| | |||||||| |||| | ||||||||| ||||||||||||| || ||| |||||||||||||| |
|
|
| T |
34699511 |
tgattgtaattgatagctctcttaagacactcgcagagttggctcccactttcattgatgttgtgctcataatcttc |
34699435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University