View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_52 (Length: 387)
Name: NF10261A_low_52
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 4 - 383
Target Start/End: Complemental strand, 36269067 - 36268687
Alignment:
| Q |
4 |
tgttggaggatacaatgagtttatggtataaggtgttatgtgagtgttacatgcaggaaaggggggaagttgtgtgtagggaggggaggtgggtcagtgc |
103 |
Q |
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| T |
36269067 |
tgttggaggatacagtgagtttatggtataaggtgttatgtgagtgttacatgcaggaaagggggaaagttgtgtgtagggaggggaggtgggtcagtgt |
36268968 |
T |
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| Q |
104 |
gttggcagactgtgaaaaatattagagcgggtgttgggctaatagatggaggtcgactgcttgataatatttgtcggaaggttggggatgagtcttctac |
203 |
Q |
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||||||| |||||||| |||||||||| |||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36268967 |
gttggcatactgtgaataatattagagagggtgttgcgctagtagattgaggtcgactgcttgataatatttgtcggaaggttggtgatgagtcttctac |
36268868 |
T |
|
| Q |
204 |
tctgttttggaatgatccttggttggatggtagatctttgaaagatagttttagaagtttgtttgagttagctgataacaaattggcaacagtcgcggag |
303 |
Q |
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| T |
36268867 |
tttgttttgaaatgatccttggttggatcgtagatctttgaaagatagttttagaagtttgtttcagttagctgataacaaattggcaacggtcgcggaa |
36268768 |
T |
|
| Q |
304 |
atgttttctttgggttggggagtgaatgacgaggcct-gaagtagcgtatgaggttgcttgaaagtagcagtcaataatca |
383 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36268767 |
atgttttctttgggttggggagtgaatgacgaggcttaaaagtagcgtatgaggttgcttgaaagtagcaatcaataatca |
36268687 |
T |
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