View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_6 (Length: 573)
Name: NF10261A_low_6
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 16 - 557
Target Start/End: Complemental strand, 52036167 - 52035630
Alignment:
| Q |
16 |
gaacctgtgtatagtgaatttgtgcaacaccaatagagattcttattaaatggaataaatgcaattgctcgttgttgtgaacttaattagcattcgcaat |
115 |
Q |
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| T |
52036167 |
gaacctgtgtatagtgaatttgtgcaacaccaatagagattcttattaaatggaataaatgcaattggtcgttgttgtgaacttaattagcattcgcaat |
52036068 |
T |
|
| Q |
116 |
tattgtttacttgctgtatagaatctcaaacagactaacaacagtagttgccttgcctaatgttgaggcatcccctgttcccacagaaaacggttaaata |
215 |
Q |
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| T |
52036067 |
tattgtttacttgttgtatagaatctcaaacagactaacaacagtagttgccttgccttatgttgaggcatcccctgttcccacagaaaacggtta---a |
52035971 |
T |
|
| Q |
216 |
atggttaatgtaatctattgagtggtttatcaattccatcctcttacatttttcattcattcttttcatcaattatccaaacaacttgcaagaacaccta |
315 |
Q |
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| T |
52035970 |
atggttaatgtaatctattgagtggtttatcaattccatcctcttacatttttcattcattcttttcatcaattatccaaacaacttgcaagaacacgta |
52035871 |
T |
|
| Q |
316 |
tnnnnnnntgtcaattacttcgaattattttgttgacaaatactaatattgtagaagcttcacagataataagttctctcccgaaaatgtatatcataac |
415 |
Q |
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| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
52035870 |
t-aaaaaatatcaattacttcgaattattttgtttacaaatactaatattgtagaagcttcacagataataagttctctcccgacaatgtatatcat-cg |
52035773 |
T |
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| Q |
416 |
ctca-acggctagttgagatcagttaaaaatggcatgaggtgcctttgatcacaataattacaaaacgatgaaaatagggtgaagttaattttcactact |
514 |
Q |
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|||| ||||| ||||||| ||||||||||| |||||| ||| ||||||||||||| | ||||||||||| || || ||| | | |||||| ||||| |
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| T |
52035772 |
ctcatacggcaagttgagtcgagttaaaaatgacatgagatgcttttgatcacaatattgacaaaacgatgcaatgagtgtgtattaaattttagctact |
52035673 |
T |
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| Q |
515 |
ttatttaattcattctctaaacaattatacttttttaacaatt |
557 |
Q |
| |
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||||||| ||||||||||||| ||| | |||||| ||| |||| |
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| T |
52035672 |
ttatttatttcattctctaaaaaatgacacttttgtaaaaatt |
52035630 |
T |
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