View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_74 (Length: 358)
Name: NF10261A_low_74
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_74 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 21 - 358
Target Start/End: Complemental strand, 49941594 - 49941257
Alignment:
| Q |
21 |
tcaaagaatatttttacacaatgcatgtggctggtttggcagcatccctctagaagcatcaggagattttggcattcaccctgagaaaggagaattaaat |
120 |
Q |
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| T |
49941594 |
tcaaagaatatttttacacaatgcatgtggctggtttggcagcatccctctagaagcatcaggagattttggcattcaccctgagaaaggagaattaaat |
49941495 |
T |
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| Q |
121 |
attatgtgccaggtacttatgatcatatttatgcttgtttacttattgtataattatttatttgtggaagcacttgttaagcaattccaaaatcactttt |
220 |
Q |
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| T |
49941494 |
attatgtgccaggtacttataatcatgtttatgtttgtttacttattgtataattatttatttgtggaagcacttgttaagcaattccaaaatcactttt |
49941395 |
T |
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| Q |
221 |
ttggaaggtagagataatatttcactaccggaaagttcttttgtaaattggagtcacaaatcacagtagacttgtttccagatgcaattctgtcaaaaat |
320 |
Q |
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| T |
49941394 |
ttggaaggtagagataatatttcactaccggaaagttcttttgtaaattggagtcacaaatcacagtagacttgtttccagatgcaattctgtcaaaaat |
49941295 |
T |
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| Q |
321 |
cacatatgttgggaagttgggtttaagttattctctga |
358 |
Q |
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| T |
49941294 |
cacatatgttgggaagttgggtttaagttattctctga |
49941257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 1906870 - 1906987
Alignment:
| Q |
21 |
tcaaagaatatttttacacaatgcatgtggctggtttggcagcatccctctagaagcatcaggagattttggcattcaccctgagaaaggagaattaaat |
120 |
Q |
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||||||||||||||||||||||||| |||| |||||||||| | |||||||||||||||||||| ||||||||||| || || ||||||| || || |
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| T |
1906870 |
tcaaagaatatttttacacaatgcaaatggccggtttggcagtgttcctctagaagcatcaggagactttggcattcatcccgaagaaggagagttccat |
1906969 |
T |
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| Q |
121 |
attatgtgccaggtactt |
138 |
Q |
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| T |
1906970 |
cttatgtgtcaggtactt |
1906987 |
T |
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