View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10261A_low_81 (Length: 355)

Name: NF10261A_low_81
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10261A_low_81
NF10261A_low_81
[»] chr2 (27 HSPs)
chr2 (14-349)||(39215559-39215894)
chr2 (16-346)||(39161771-39162104)
chr2 (16-346)||(39207090-39207423)
chr2 (18-151)||(39370039-39370172)
chr2 (14-344)||(39388918-39389253)
chr2 (176-343)||(39192266-39192436)
chr2 (176-343)||(39197946-39198116)
chr2 (14-131)||(39192439-39192556)
chr2 (14-131)||(39198119-39198236)
chr2 (176-278)||(39222932-39223037)
chr2 (209-346)||(39370254-39370394)
chr2 (14-100)||(39137809-39137895)
chr2 (14-151)||(39414761-39414898)
chr2 (18-127)||(39468270-39468379)
chr2 (12-130)||(39473409-39473527)
chr2 (14-131)||(39222812-39222929)
chr2 (205-342)||(39381275-39381412)
chr2 (18-107)||(39397872-39397961)
chr2 (14-130)||(39459179-39459295)
chr2 (16-131)||(39381510-39381625)
chr2 (15-130)||(39421832-39421947)
chr2 (205-250)||(39421688-39421733)
chr2 (205-242)||(39468448-39468485)
chr2 (14-64)||(39152511-39152561)
chr2 (14-108)||(39494464-39494558)
chr2 (284-337)||(39223101-39223154)
chr2 (198-242)||(39459387-39459431)
[»] chr6 (2 HSPs)
chr6 (18-127)||(16113230-16113339)
chr6 (205-242)||(16113441-16113478)
[»] chr7 (2 HSPs)
chr7 (14-100)||(19807759-19807845)
chr7 (206-302)||(19807963-19808059)
[»] chr5 (2 HSPs)
chr5 (205-346)||(33561135-33561281)
chr5 (210-250)||(17059602-17059642)
[»] chr8 (1 HSPs)
chr8 (221-336)||(45342187-45342305)


Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 14 - 349
Target Start/End: Original strand, 39215559 - 39215894
Alignment:
Q  14 agagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtctgga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39215559 agagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttgga 39215658  T
Q  114 ggacaagtcaaggatcctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatattgaagaaacacaatcgggta 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215659 ggacaagtcaaggatcctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatattgaagaaacacaatcgggta 39215758  T
Q  214 aatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaaa 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215759 aatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaaa 39215858  T
Q  314 aatatttttaatcatgttaatgttttatgtctttgt 349  Q
    ||||||||||||||||||||||||||||||||||||    
T  39215859 aatatttttaatcatgttaatgttttatgtctttgt 39215894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 16 - 346
Target Start/End: Original strand, 39161771 - 39162104
Alignment:
Q  16 agaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtctggagg 115  Q
    |||| |||||||||||||||||||| ||||| |||   |||||| ||||| |||||||| | |  |||||| |||| |||||||| ||||| | || |||    
T  39161771 agaaacaatttgaaggacggtggaatgaactggagacgaaagagtataagctcaaagtaaatgagaaggagctcaacttaaaagaaaagcaatttgaagg 39161870  T
Q  116 acaagtcaaggatcctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatattgaaga---aacacaatcgggt 212  Q
    |||||||||||||||||||| |||| |||| ||||| |||  || ||  | | ||| || ||||||||||||||||||||| ||   || | |||| |||    
T  39161871 acaagtcaaggatcctaagtcaaagatgaataaatttgatggacaactaaaggagcctgagtcaaggaaaaaatatattgatgaggaaaaagaatccggt 39161970  T
Q  213 aaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaa 312  Q
    |||||||||| ||||||||| ||||||||||| ||| | || ||| |||||| ||||||||||||| | |||||  | || ||||||| || || |||||    
T  39161971 aaatgttcttcttcatctagattattgaaagaattttattataactgttccttttaatgatgatgatattttttgaatcctgatctacttaattttttaa 39162070  T
Q  313 aaatatttttaatcatgttaatgttttatgtctt 346  Q
    | |  |||||| ||||||||||||| ||||||||    
T  39162071 acacgtttttactcatgttaatgttgtatgtctt 39162104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 16 - 346
Target Start/End: Complemental strand, 39207423 - 39207090
Alignment:
Q  16 agaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtctggagg 115  Q
    |||| |||||||||||||||||||| ||||| |||   |||||| ||||| |||||||| | |  |||||| |||| |||||||| ||||| | || |||    
T  39207423 agaaacaatttgaaggacggtggaatgaactggagacgaaagagtataagctcaaagtaaatgagaaggagctcaacttaaaagaaaagcaatttgaagg 39207324  T
Q  116 acaagtcaaggatcctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatattgaaga---aacacaatcgggt 212  Q
    |||||||||||||||||||| |||| |||| ||||| |||  || ||  | | ||| || ||||||||||||||||||||| ||   || | |||| |||    
T  39207323 acaagtcaaggatcctaagtcaaagatgaataaatttgatggacaactaaaggagcctgagtcaaggaaaaaatatattgatgaggaaaaagaatccggt 39207224  T
Q  213 aaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaa 312  Q
    |||||||||| ||||||||| ||||||||||| ||| | || ||| |||||| ||||||||||||| | |||||  | || ||||||| || || |||||    
T  39207223 aaatgttcttcttcatctagattattgaaagaattttattataactgttccttttaatgatgatgatattttttgaatcctgatctacttaattttttaa 39207124  T
Q  313 aaatatttttaatcatgttaatgttttatgtctt 346  Q
    | |  |||||| ||||||||||||| ||||||||    
T  39207123 acacgtttttactcatgttaatgttgtatgtctt 39207090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 39370039 - 39370172
Alignment:
Q  18 aagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtctggaggac 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| ||||||||| | |||||||||||||||| |||| |||    
T  39370039 aagcaatttgaaggacggtggaaagaacttgagttaaaagagaacaagttcatagtgcaggtgaaggagttcgaattaaaagagaagcagtttggaagac 39370138  T
Q  118 aagtcaaggatcctaagttaaagttgaaaaaatt 151  Q
    ||||||||| || | ||| |||| |||| |||||    
T  39370139 aagtcaagggtcttgagtcaaagatgaataaatt 39370172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 344
Target Start/End: Complemental strand, 39389253 - 39388918
Alignment:
Q  14 agagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtctgga 113  Q
    |||| ||| |||| || |||| ||||| ||||| ||||| |||||| |||||||||||||| |||| |||||| |||| |||||||| ||||||| || |    
T  39389253 agagcagcgatttaaaagacgatggaacgaactggagttgaaagagtataagttcaaagtaaaggtgaaggagctcaacttaaaagaaaagcagtttgaa 39389154  T
Q  114 ggacaagtcaaggatcctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatattga---agaaacacaatcgg 210  Q
    || |||||||| |||||| ||| |||| |||| ||||| |||  || |   | | |||  | |||||||||||||||| ||||    |||| | |||| |    
T  39389153 gggcaagtcaacgatcctgagtcaaagctgaataaatttgatggacaaataaaggagcccgagtcaaggaaaaaatattttgatggggaaaaagaatccg 39389054  T
Q  211 gtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgaca--atttttataacccgatctacatagttgt 308  Q
    ||||||||||||||||||| |||||||||||||| |||   |||||| |||||||||||||||||||| |   |||||||| |  ||||||| || ||      
T  39389053 gtaaatgttcttattcatccagtttattgaaagaatttttttacaactgttcctcttaatgatgatgatattttttttatagcttgatctacttaattcc 39388954  T
Q  309 ttaaaaatatttttaatcatgttaatgttttatgtc 344  Q
     || |||  |||||||||||||||||||| ||||||    
T  39388953 atagaaacgtttttaatcatgttaatgttgtatgtc 39388918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 176 - 343
Target Start/End: Complemental strand, 39192436 - 39192266
Alignment:
Q  176 gtcaaggaaaaaatatattgaaga---aacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 272  Q
    |||||||||||| |||||||| ||   || | |||| ||||||||| |||||||||||  |||||||| ||| ||||| | ||||  |||||||||||||    
T  39192436 gtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgacagaatttcattgcaactattcctcttaatga 39192337  T
Q  273 tgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgt 343  Q
    |||||| | ||||||||||  ||||||| || || |||||||| ||||||||||||||||||||| |||||    
T  39192336 tgatgatattttttataacatgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgt 39192266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 176 - 343
Target Start/End: Complemental strand, 39198116 - 39197946
Alignment:
Q  176 gtcaaggaaaaaatatattgaaga---aacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 272  Q
    |||||||||||| |||||||| ||   || | |||| ||||||||| |||||||||||  |||||||| ||| ||||| | ||||  |||||||||||||    
T  39198116 gtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgacagaatttcattgcaactattcctcttaatga 39198017  T
Q  273 tgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgt 343  Q
    |||||| | ||||||||||  ||||||| || || |||||||| ||||||||||||||||||||| |||||    
T  39198016 tgatgatattttttataacatgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgt 39197946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 39192556 - 39192439
Alignment:
Q  14 agagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtctgga 113  Q
    |||||||||||| |||||||| ||||  |||||||||| |||||||||||||||||||| | |||| |||||| |||| |||||||| ||||||| || |    
T  39192556 agagaagcaattagaaggacgatggagtgaacttgagtcaaaagagaataagttcaaagcaaaggtgaaggagctcaacttaaaagaaaagcagtttgaa 39192457  T
Q  114 ggacaagtcaaggatcct 131  Q
    |||| |||||||||||||    
T  39192456 ggactagtcaaggatcct 39192439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 39198236 - 39198119
Alignment:
Q  14 agagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtctgga 113  Q
    |||||||||||| |||||||| ||||  |||||||||| |||||||||||||||||||| | |||| |||||| |||| |||||||| ||||||| || |    
T  39198236 agagaagcaattagaaggacgatggagtgaacttgagtcaaaagagaataagttcaaagcaaaggtgaaggagctcaacttaaaagaaaagcagtttgaa 39198137  T
Q  114 ggacaagtcaaggatcct 131  Q
    |||| |||||||||||||    
T  39198136 ggactagtcaaggatcct 39198119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 176 - 278
Target Start/End: Original strand, 39222932 - 39223037
Alignment:
Q  176 gtcaaggaaaaaatatattga---agaaacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 272  Q
    |||||||||||||||||||||   ||||| | |||||||||||||||||||||||||| ||||||||||| | ||||  |||||| ||||||||||||||    
T  39222932 gtcaaggaaaaaatatattgatggagaaaaagaatcgggtaaatgttcttattcatcttgtttattgaaaaaatttctttacaactgttcctcttaatga 39223031  T
Q  273 tgatga 278  Q
    ||||||    
T  39223032 tgatga 39223037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 209 - 346
Target Start/End: Original strand, 39370254 - 39370394
Alignment:
Q  209 gggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctctta---atgatgatgacaatttttataacccgatctacatagt 305  Q
    ||||||||||||||||||||||||||||||||   | ||||| || ||  ||||| ||||   |||||||||| | |||||||||||||||||| |||||    
T  39370254 gggtaaatgttcttattcatctagtttattgatttaatttcattataattgttccacttaatgatgatgatgatattttttataacccgatctatatagt 39370353  T
Q  306 tgtttaaaaatatttttaatcatgttaatgttttatgtctt 346  Q
    | | |||||| ||| ||||||||||||||||| ||||||||    
T  39370354 tctataaaaacattcttaatcatgttaatgttgtatgtctt 39370394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 39137809 - 39137895
Alignment:
Q  14 agagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaaga 100  Q
    |||||||||| |||||| ||||||||||||||| |||| ||||||||||||||||||||||| ||| || ||| |||||||||||||    
T  39137809 agagaagcaaattgaagaacggtggaaagaactcgagtcaaaagagaataagttcaaagtactggtcaaagagctcaagttaaaaga 39137895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 14 - 151
Target Start/End: Complemental strand, 39414898 - 39414761
Alignment:
Q  14 agagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtctgga 113  Q
    ||||||||||||||||| ||| |||||||||||  ||  ||| ||||||||||||||| ||| ||| || ||| |||||||||| ||||| |||| || |    
T  39414898 agagaagcaatttgaagaacgatggaaagaactcaagacaaatgagaataagttcaaactactggtcaaagagctcaagttaaatgagaaacagtttgaa 39414799  T
Q  114 ggacaagtcaaggatcctaagttaaagttgaaaaaatt 151  Q
    |||||||| ||||||||| ||| |||| || |||||||    
T  39414798 ggacaagttaaggatcctgagtcaaagctggaaaaatt 39414761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 39468270 - 39468379
Alignment:
Q  18 aagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtctggaggac 117  Q
    ||||||||||| | |||||| |||||| |  ||| ||||||||||  |||||||||| |||| |||||||||||||||||||||||||||  || |||||    
T  39468270 aagcaatttgatgaacggtgtaaagaattgaagtcaaaagagaatcggttcaaagtaaaggtgaaggagttcaagttaaaagagaagcagattgaaggac 39468369  T
Q  118 aagtcaagga 127  Q
    ||||||||||    
T  39468370 aagtcaagga 39468379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 39473527 - 39473409
Alignment:
Q  12 atagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtctg 111  Q
    |||| |||||||||||||| ||| ||||||||||| |||| |||||||||||||||||||||||  || |||    ||||||||||||||||||||  ||    
T  39473527 atagcgaagcaatttgaagaacgatggaaagaactcgagtcaaaagagaataagttcaaagtactagtgaagtcactcaagttaaaagagaagcaggttg 39473428  T
Q  112 gaggacaagtcaaggatcc 130  Q
     |||| ||||| |||||||    
T  39473427 aaggagaagtcgaggatcc 39473409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 131
Target Start/End: Original strand, 39222812 - 39222929
Alignment:
Q  14 agagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtctgga 113  Q
    ||||||||||||||||| ||| |||||  ||||||||| | |||||||||||||||||| | |||| |||||| |||| || ||||| |||  || || |    
T  39222812 agagaagcaatttgaagaacgatggaataaacttgagtcagaagagaataagttcaaagcaaaggtgaaggagctcaacttcaaagaaaagtggtttgaa 39222911  T
Q  114 ggacaagtcaaggatcct 131  Q
    ||||||||||||||||||    
T  39222912 ggacaagtcaaggatcct 39222929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 205 - 342
Target Start/End: Complemental strand, 39381412 - 39381275
Alignment:
Q  205 aatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatag 304  Q
    |||| ||||||||||||||||||| ||||||| ||||||| ||||| | ||   ||| || ||||||||| ||| | ||||  ||||  ||||||||||     
T  39381412 aatctggtaaatgttcttattcatatagtttactgaaagaatttcatttcagttgtttcttttaatgatgttgatacttttattaacttgatctacataa 39381313  T
Q  305 ttgtttaaaaatatttttaatcatgttaatgttttatg 342  Q
    ||  |||||||||||||||||| |||||||||| ||||    
T  39381312 ttcattaaaaatatttttaatcgtgttaatgttgtatg 39381275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 39397961 - 39397872
Alignment:
Q  18 aagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcag 107  Q
    |||||| |||||| |||||||||| ||||||||| |||||||||| ||||||||||| ||||  ||||| |  |||||||||||||||||    
T  39397961 aagcaaattgaagaacggtggaaaaaacttgagtcaaaagagaatcagttcaaagtaaaggtgcaggagcttgagttaaaagagaagcag 39397872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 39459179 - 39459295
Alignment:
Q  14 agagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtctgga 113  Q
    ||||||||||||||||| || | |||||||| | ||     |||||||||||||||||||||  || || ||| ||||||||||||| ||||| | || |    
T  39459179 agagaagcaatttgaagaacagcggaaagaattcgatgctgaagagaataagttcaaagtactagtgaaagagctcaagttaaaagacaagcaatttgaa 39459278  T
Q  114 ggacaagtcaaggatcc 130  Q
    |||||||||||||||||    
T  39459279 ggacaagtcaaggatcc 39459295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 131
Target Start/End: Complemental strand, 39381625 - 39381510
Alignment:
Q  16 agaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtctggagg 115  Q
    ||||| ||||||||| |||   ||||||||  || | |||||||||| ||||||||||| || | || ||| ||||||||||||||||||||| || | |    
T  39381625 agaagaaatttgaagaacgaatgaaagaacacgaatcaaaagagaatgagttcaaagtaaagatgaatgagctcaagttaaaagagaagcagtttgaaag 39381526  T
Q  116 acaagtcaaggatcct 131  Q
    ||||| ||||||||||    
T  39381525 acaagacaaggatcct 39381510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 39421947 - 39421832
Alignment:
Q  15 gagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtctggag 114  Q
    |||||| ||||||||| ||  |||||||||||  ||| |||||||||||||||||||||||  || || ||| |||| |||||||| ||||  | |||||    
T  39421947 gagaagaaatttgaagaacaatggaaagaactcaagtcaaaagagaataagttcaaagtactagtgaaagagctcaaattaaaagacaagcgatttggag 39421848  T
Q  115 gacaagtcaaggatcc 130  Q
     || ||||||||||||    
T  39421847 cactagtcaaggatcc 39421832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 39421733 - 39421688
Alignment:
Q  205 aatcgggtaaatgttcttattcatctagtttattgaaagagtttca 250  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||    
T  39421733 aatctggtaaatgttcttattcatctaatttattgaaagagtttca 39421688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 39468448 - 39468485
Alignment:
Q  205 aatcgggtaaatgttcttattcatctagtttattgaaa 242  Q
    |||| |||||||||||||||||||||||||||||||||    
T  39468448 aatctggtaaatgttcttattcatctagtttattgaaa 39468485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 39152511 - 39152561
Alignment:
Q  14 agagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataa 64  Q
    ||||||||||||||||  |||||||||||| || |||| ||||||||||||    
T  39152511 agagaagcaatttgaaaaacggtggaaagagctcgagtcaaaagagaataa 39152561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 39494558 - 39494464
Alignment:
Q  14 agagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagt 108  Q
    |||||| ||||||||||||||  ||||||| |  |||| |||||| || |||||||||| ||| || |||||| | |||  ||||||||||||||    
T  39494558 agagaaacaatttgaaggacgagggaaagagccagagtcaaaagacaagaagttcaaagcacacgtgaaggagctgaagccaaaagagaagcagt 39494464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 337
Target Start/End: Original strand, 39223101 - 39223154
Alignment:
Q  284 tttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgtt 337  Q
    |||| |||| ||||||| || || ||||| ||||||||||||||||||||||||    
T  39223101 tttacaacctgatctacttaattctttaagaatatttttaatcatgttaatgtt 39223154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 39459387 - 39459431
Alignment:
Q  198 gaaacacaatcgggtaaatgttcttattcatctagtttattgaaa 242  Q
    |||||| |||||||||| ||||||||||||| ||| |||||||||    
T  39459387 gaaacagaatcgggtaagtgttcttattcatttagcttattgaaa 39459431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 16113230 - 16113339
Alignment:
Q  18 aagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtctggaggac 117  Q
    ||||||||||||| ||||||||||||||| || | |||||||||| ||||||||||| |||  |||||| ||||||||||||||||||||  || || ||    
T  16113230 aagcaatttgaagaacggtggaaagaactcgaatcaaaagagaatcagttcaaagtaaaggagaaggagctcaagttaaaagagaagcagattgaagtac 16113329  T
Q  118 aagtcaagga 127  Q
    ||||||||||    
T  16113330 aagtcaagga 16113339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 16113441 - 16113478
Alignment:
Q  205 aatcgggtaaatgttcttattcatctagtttattgaaa 242  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  16113441 aatcgggtaagtgttctcattcatctagtttattgaaa 16113478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 19807759 - 19807845
Alignment:
Q  14 agagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaaga 100  Q
    |||||| ||| |||||| | ||||||||||||| |||| ||||||||||||||||||||||| ||| || ||| |||||||||||||    
T  19807759 agagaatcaaattgaagaaaggtggaaagaactcgagtcaaaagagaataagttcaaagtactggtcaaagagctcaagttaaaaga 19807845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 206 - 302
Target Start/End: Original strand, 19807963 - 19808059
Alignment:
Q  206 atcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacat 302  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||| | || | ||| || || |||||| ||| | |||| |||||| |||||||||    
T  19807963 atcgggtaaaagttcttattcatctagtttatagaaggagtttcatttcagctgtttctttttatgatgttgatatttttaataacctgatctacat 19808059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 205 - 346
Target Start/End: Original strand, 33561135 - 33561281
Alignment:
Q  205 aatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaattt----ttataacccgatctac 300  Q
    |||| ||||||||||||| ||||||||||||||||||||| ||| | || ||  |||||||| | |||||||||  ||||    ||||| || |||||||    
T  33561135 aatccggtaaatgttcttcttcatctagtttattgaaagaattttattataagtgttcctctcagtgatgatgatgattttttgttatatcctgatctac 33561234  T
Q  301 atagttgtttaaaaatatttttaatcatgttaatgttt-tatgtctt 346  Q
     || |  |||||| | |||||||||||||||||||||| ||||||||    
T  33561235 ttaatcctttaaacacatttttaatcatgttaatgtttgtatgtctt 33561281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 17059602 - 17059642
Alignment:
Q  210 ggtaaatgttcttattcatctagtttattgaaagagtttca 250  Q
    |||||||||| |||||||||||||||||| ||||| |||||    
T  17059602 ggtaaatgttgttattcatctagtttattaaaagaatttca 17059642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 336
Target Start/End: Original strand, 45342187 - 45342305
Alignment:
Q  221 ttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaaaa---ata 317  Q
    |||||||||||||||||||||||| ||||| | ||||  || || ||  ||||| ||| | |||| |||||| |||||||||| |  |||||||   |||    
T  45342187 ttattcatctagtttattgaaagaatttcatttcaactatttcttttgttgatgttgatatttttaataacctgatctacatattcttttaaaaaatata 45342286  T
Q  318 tttttaatcatgttaatgt 336  Q
    | |||||| ||||||||||    
T  45342287 tgtttaatgatgttaatgt 45342305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University