View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10261A_low_84 (Length: 354)

Name: NF10261A_low_84
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10261A_low_84
NF10261A_low_84
[»] chr3 (28 HSPs)
chr3 (140-297)||(8578714-8578860)
chr3 (22-77)||(45227277-45227332)
chr3 (21-78)||(5938738-5938795)
chr3 (21-78)||(19480035-19480092)
chr3 (21-72)||(18111592-18111643)
chr3 (21-78)||(5938805-5938862)
chr3 (21-78)||(5938872-5938929)
chr3 (21-78)||(18111525-18111582)
chr3 (21-78)||(19384283-19384340)
chr3 (21-78)||(28034677-28034734)
chr3 (21-62)||(28034744-28034785)
chr3 (21-76)||(19441070-19441125)
chr3 (21-62)||(5835636-5835677)
chr3 (21-78)||(5938939-5938996)
chr3 (21-78)||(18111458-18111515)
chr3 (21-78)||(19384221-19384278)
chr3 (21-62)||(19441137-19441178)
chr3 (21-62)||(28034810-28034851)
chr3 (21-53)||(14521046-14521078)
chr3 (21-61)||(19384107-19384147)
chr3 (21-60)||(29897129-29897168)
chr3 (77-185)||(8553460-8553561)
chr3 (77-115)||(8584154-8584192)
chr3 (21-62)||(5939006-5939047)
chr3 (297-330)||(8578423-8578456)
chr3 (21-53)||(14521112-14521144)
chr3 (21-53)||(19479993-19480025)
chr3 (21-53)||(29897074-29897106)
[»] chr6 (23 HSPs)
chr6 (21-78)||(5249991-5250048)
chr6 (18-78)||(28145227-28145287)
chr6 (21-78)||(28145163-28145220)
chr6 (21-77)||(26620431-26620487)
chr6 (21-77)||(26726410-26726466)
chr6 (21-78)||(31113201-31113259)
chr6 (21-62)||(6406612-6406653)
chr6 (21-78)||(28145096-28145153)
chr6 (21-62)||(31113150-31113191)
chr6 (21-61)||(34255591-34255631)
chr6 (21-63)||(5250075-5250117)
chr6 (21-63)||(29934548-29934590)
chr6 (21-53)||(26620388-26620420)
chr6 (21-53)||(26726367-26726399)
chr6 (21-53)||(29934624-29934656)
chr6 (21-53)||(33296088-33296120)
chr6 (21-53)||(34255467-34255499)
chr6 (21-53)||(34255533-34255565)
chr6 (21-53)||(34255665-34255697)
chr6 (25-63)||(26620314-26620352)
chr6 (25-63)||(26726227-26726265)
chr6 (21-53)||(26726301-26726333)
chr6 (21-53)||(28145297-28145329)
[»] scaffold0046 (2 HSPs)
scaffold0046 (21-78)||(90495-90552)
scaffold0046 (21-53)||(90630-90662)
[»] chr8 (19 HSPs)
chr8 (21-78)||(3165849-3165906)
chr8 (21-78)||(25336617-25336674)
chr8 (21-78)||(3165982-3166039)
chr8 (23-78)||(25336552-25336607)
chr8 (21-78)||(3165916-3165972)
chr8 (21-78)||(5557903-5557959)
chr8 (21-78)||(25336489-25336545)
chr8 (21-78)||(5557837-5557893)
chr8 (21-78)||(20810385-20810442)
chr8 (21-77)||(3165783-3165839)
chr8 (21-53)||(5557771-5557803)
chr8 (21-53)||(20810343-20810375)
chr8 (23-53)||(5557707-5557737)
chr8 (21-63)||(5558036-5558078)
chr8 (23-52)||(3166075-3166104)
chr8 (21-54)||(21542079-21542112)
chr8 (21-62)||(25336684-25336725)
chr8 (21-53)||(26082049-26082081)
chr8 (21-53)||(26082117-26082149)
[»] chr4 (33 HSPs)
chr4 (21-75)||(31663564-31663618)
chr4 (21-78)||(5578236-5578293)
chr4 (21-63)||(4852584-4852626)
chr4 (21-63)||(4852653-4852695)
chr4 (21-78)||(6735363-6735421)
chr4 (21-78)||(1505993-1506050)
chr4 (21-62)||(13713189-13713230)
chr4 (21-78)||(31663427-31663484)
chr4 (19-63)||(5599995-5600039)
chr4 (21-78)||(1506126-1506183)
chr4 (24-69)||(5578441-5578486)
chr4 (21-78)||(5599931-5599987)
chr4 (21-62)||(13713122-13713163)
chr4 (21-62)||(13713322-13713363)
chr4 (21-78)||(14190501-14190557)
chr4 (21-62)||(31663308-31663349)
chr4 (21-62)||(31663376-31663417)
chr4 (21-53)||(1506060-1506092)
chr4 (21-53)||(1506193-1506225)
chr4 (21-53)||(5599799-5599831)
chr4 (21-53)||(5599865-5599897)
chr4 (21-53)||(5909076-5909108)
chr4 (21-53)||(5909142-5909174)
chr4 (21-53)||(13702629-13702661)
chr4 (21-61)||(13713256-13713296)
chr4 (24-63)||(14190570-14190609)
chr4 (21-72)||(31663229-31663280)
chr4 (23-78)||(31663494-31663549)
chr4 (21-63)||(1506259-1506301)
chr4 (21-63)||(13713389-13713431)
chr4 (33-78)||(6735431-6735476)
chr4 (21-53)||(4852723-4852755)
chr4 (21-53)||(5578327-5578359)
[»] scaffold0927 (2 HSPs)
scaffold0927 (21-78)||(3644-3701)
scaffold0927 (21-78)||(3577-3634)
[»] scaffold0043 (3 HSPs)
scaffold0043 (21-78)||(69747-69804)
scaffold0043 (19-78)||(69814-69873)
scaffold0043 (21-63)||(69695-69737)
[»] chr7 (24 HSPs)
chr7 (21-78)||(3078555-3078612)
chr7 (21-78)||(3081347-3081403)
chr7 (21-78)||(15695427-15695484)
chr7 (21-78)||(15702407-15702464)
chr7 (21-78)||(21958537-21958594)
chr7 (21-63)||(3081140-3081182)
chr7 (21-78)||(4341296-4341353)
chr7 (21-78)||(21958470-21958527)
chr7 (19-63)||(48478354-48478398)
chr7 (21-63)||(3078650-3078692)
chr7 (21-63)||(42785902-42785944)
chr7 (21-78)||(34456446-34456503)
chr7 (21-78)||(42785954-42786010)
chr7 (21-78)||(48478290-48478346)
chr7 (21-69)||(3078497-3078545)
chr7 (21-53)||(4341230-4341262)
chr7 (21-53)||(4341429-4341461)
chr7 (21-53)||(34456338-34456370)
chr7 (21-53)||(34456404-34456436)
chr7 (21-53)||(48477962-48477994)
chr7 (21-53)||(48478028-48478060)
chr7 (21-53)||(48478094-48478126)
chr7 (21-53)||(48478224-48478256)
chr7 (21-78)||(4341363-4341419)
[»] chr2 (13 HSPs)
chr2 (21-78)||(31346814-31346871)
chr2 (23-77)||(31346934-31346988)
chr2 (21-78)||(31314999-31315056)
chr2 (21-62)||(31315066-31315107)
chr2 (21-62)||(31315136-31315177)
chr2 (21-78)||(31347067-31347124)
chr2 (21-78)||(31347000-31347057)
chr2 (21-53)||(2743325-2743357)
chr2 (21-53)||(2743391-2743423)
chr2 (21-53)||(2743457-2743489)
chr2 (21-53)||(2743523-2743555)
chr2 (21-53)||(11951283-11951315)
chr2 (21-53)||(31315204-31315236)
[»] chr1 (15 HSPs)
chr1 (21-78)||(15088584-15088641)
chr1 (21-78)||(22207981-22208038)
chr1 (21-78)||(22211192-22211249)
chr1 (21-62)||(22207778-22207819)
chr1 (21-78)||(51844365-51844422)
chr1 (23-63)||(14114754-14114794)
chr1 (27-63)||(14114823-14114859)
chr1 (21-53)||(22207709-22207741)
chr1 (21-53)||(22207845-22207877)
chr1 (21-53)||(22208048-22208080)
chr1 (21-53)||(22208115-22208147)
chr1 (24-63)||(14114894-14114933)
chr1 (21-62)||(22207914-22207955)
chr1 (21-78)||(51844298-51844355)
chr1 (21-78)||(51844432-51844489)
[»] chr5 (5 HSPs)
chr5 (21-63)||(41528656-41528698)
chr5 (21-78)||(41528458-41528514)
chr5 (21-78)||(41528524-41528580)
chr5 (21-78)||(41528590-41528646)
chr5 (21-53)||(37368926-37368958)
[»] scaffold0060 (2 HSPs)
scaffold0060 (21-62)||(39927-39968)
scaffold0060 (21-53)||(40003-40035)


Alignment Details
Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 140 - 297
Target Start/End: Complemental strand, 8578860 - 8578714
Alignment:
Q  140 ttgtagttgtggtaacttcaaaaacaataatgctgc---attcaagatttaaaacttataagattctactaagtcttgaatagttaaccctccacagtcc 236  Q
    |||||||||||||||||| |||||||||||||||||   ||||||||| |||||||||              |||||||||||| ||| ||||||||| |    
T  8578860 ttgtagttgtggtaacttgaaaaacaataatgctgctgcattcaagatataaaactta--------------gtcttgaatagtcaactctccacagttc 8578775  T
Q  237 acacgacacttatgcataaattcataaactaaaagataatacttccttatggatcctctaa 297  Q
    |||||||||| |||||||||||||||||||||||||||||  || ||||||||||||||||    
T  8578774 acacgacactcatgcataaattcataaactaaaagataatttttgcttatggatcctctaa 8578714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 45227332 - 45227277
Alignment:
Q  22 cataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactat 77  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||    
T  45227332 cataggctacattatctcttcgttgtagcaaacagagtttttacatttcttactat 45227277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 5938738 - 5938795
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    |||||| ||||||||||||||||||||||||||  ||||||| |||||||||||||||    
T  5938738 tcatagtctacattatctcttcgttgtagcaaactgagttttcgcatttgttactatg 5938795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 19480092 - 19480035
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    |||||||||||||||||||||| |||||| ||| | ||||||||||||||||||||||    
T  19480092 tcataggctacattatctcttcattgtaggaaacaaagtttttgcatttgttactatg 19480035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 18111592 - 18111643
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgtt 72  Q
    |||||||||||||||||||||||||||||||||  ||||||| |||||||||    
T  18111592 tcataggctacattatctcttcgttgtagcaaacggagttttcgcatttgtt 18111643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 5938805 - 5938862
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    |||||||||| ||||||||||||||||||||||  |||||||  ||||||||||||||    
T  5938805 tcataggctatattatctcttcgttgtagcaaacggagttttcacatttgttactatg 5938862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 5938872 - 5938929
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    ||||||||||||| |||||||||||||||||||  |||||||  ||||||||||||||    
T  5938872 tcataggctacatcatctcttcgttgtagcaaacggagttttcacatttgttactatg 5938929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 18111525 - 18111582
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    |||||||||||||||||||||||||||||||||  |||||||  ||||| ||||||||    
T  18111525 tcataggctacattatctcttcgttgtagcaaacggagttttcacattttttactatg 18111582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 19384283 - 19384340
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    |||||||||||||||||||||||| ||||||||  ||||||| ||||| |||||||||    
T  19384283 tcataggctacattatctcttcgtcgtagcaaacggagttttcgcattcgttactatg 19384340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 28034677 - 28034734
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    |||||||||||||||| |||||||||||||||| | |||||| | |||||||||||||    
T  28034677 tcataggctacattatttcttcgttgtagcaaacaaagttttcggatttgttactatg 28034734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 28034744 - 28034785
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttt 62  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  28034744 tcataggctacattatctcttcgttgtagcaaacagagtttt 28034785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 19441070 - 19441125
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttacta 76  Q
    |||||| ||||||||||||||||| ||||||||  ||||||| |||||||||||||    
T  19441070 tcatagactacattatctcttcgtcgtagcaaacggagttttcgcatttgttacta 19441125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 5835636 - 5835677
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttt 62  Q
    |||||||||||||||||||||||||||||||||  |||||||    
T  5835636 tcataggctacattatctcttcgttgtagcaaacggagtttt 5835677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 5938939 - 5938996
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    |||||||||||||||||||||||||||||||||  || ||||  ||||| ||||||||    
T  5938939 tcataggctacattatctcttcgttgtagcaaacggaattttcacatttattactatg 5938996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 18111458 - 18111515
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    |||||||||||||||||||||||||||||||||  | |||||  ||||||||| ||||    
T  18111458 tcataggctacattatctcttcgttgtagcaaacggggttttcacatttgttattatg 18111515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 19384221 - 19384278
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    ||||||| |||||||||||||||| ||||||||  ||||||| ||||| |||||||||    
T  19384221 tcataggttacattatctcttcgtcgtagcaaacggagttttcgcattcgttactatg 19384278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 19441137 - 19441178
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttt 62  Q
    ||||||||||||||||||||||||||||||||| | ||||||    
T  19441137 tcataggctacattatctcttcgttgtagcaaacaaagtttt 19441178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 28034810 - 28034851
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttt 62  Q
    |||||||||||||||||||||||||||||||||  |||||||    
T  28034810 tcataggctacattatctcttcgttgtagcaaacggagtttt 28034851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 14521078 - 14521046
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  14521078 tcataggctacattatctcttcgttgtagcaaa 14521046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 19384107 - 19384147
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagttt 61  Q
    |||||||||||||||||||||||| ||||||||| ||||||    
T  19384107 tcataggctacattatctcttcgtcgtagcaaatggagttt 19384147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 29897129 - 29897168
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtt 60  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  29897129 tcataggctacattatctctttgttgtagcaaacagagtt 29897168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 185
Target Start/End: Original strand, 8553460 - 8553561
Alignment:
Q  77 tgtgatactatactgcagagtatcaccttgaatgtggctgatatgggctcaatcacagagtttttgtagttgtggtaacttcaaaaacaataatgctgca 176  Q
    |||||||||||||||||||||||||| |  ||||||| |||||  | ||||||        | |||||||||||||||||| |||| |||||||||  ||    
T  8553460 tgtgatactatactgcagagtatcacatcaaatgtggttgatacagactcaatg-------tgttgtagttgtggtaactttaaaaccaataatgccaca 8553552  T
Q  177 ttcaagatt 185  Q
    |||||||||    
T  8553553 ttcaagatt 8553561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 115
Target Start/End: Complemental strand, 8584192 - 8584154
Alignment:
Q  77 tgtgatactatactgcagagtatcaccttgaatgtggct 115  Q
    |||||||||||||||||||||||||| | ||||||||||    
T  8584192 tgtgatactatactgcagagtatcacatggaatgtggct 8584154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 5939006 - 5939047
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttt 62  Q
    |||||| ||||||||||||||||||||||||||  |||||||    
T  5939006 tcatagactacattatctcttcgttgtagcaaacggagtttt 5939047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Complemental strand, 8578456 - 8578423
Alignment:
Q  297 atggatgtccttcaccaagatgagcgagttcaac 330  Q
    ||||||||||||| ||||||||||||||||||||    
T  8578456 atggatgtccttccccaagatgagcgagttcaac 8578423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 14521144 - 14521112
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    ||||| |||||||||||||||||||||||||||    
T  14521144 tcatacgctacattatctcttcgttgtagcaaa 14521112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 19480025 - 19479993
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||| ||||||||||||||||||||||    
T  19480025 tcataggctatattatctcttcgttgtagcaaa 19479993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 29897074 - 29897106
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||| ||||||||||||||||    
T  29897074 tcataggctacattatttcttcgttgtagcaaa 29897106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 5250048 - 5249991
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5250048 tcataggctacattatctcttcgttgtagcaaatagagttttcgcatttgttactatg 5249991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 28145227 - 28145287
Alignment:
Q  18 acatcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    ||||||||||||||||||||||||||||||||||||  ||| ||||||||| |||||||||    
T  28145227 acatcataggctacattatctcttcgttgtagcaaacggagattttgcattcgttactatg 28145287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 28145163 - 28145220
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    |||||||||||||||||||||||||||||||||  |||| || |||||||||||||||    
T  28145163 tcataggctacattatctcttcgttgtagcaaacggagtcttcgcatttgttactatg 28145220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 26620487 - 26620431
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactat 77  Q
    |||||||||||||||||||||||||||||||||  ||||||| ||||| ||||||||    
T  26620487 tcataggctacattatctcttcgttgtagcaaacggagttttcgcattcgttactat 26620431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 26726466 - 26726410
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactat 77  Q
    |||||||||||||||||||||||||||||||||  ||||||| ||||| ||||||||    
T  26726466 tcataggctacattatctcttcgttgtagcaaacggagttttcgcattcgttactat 26726410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 31113259 - 31113201
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaataga-gtttttgcatttgttactatg 78  Q
    ||||| ||||||||||||||||||||||||||||||| |||||  ||||||||||||||    
T  31113259 tcataagctacattatctcttcgttgtagcaaatagaggttttcacatttgttactatg 31113201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 6406612 - 6406653
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttt 62  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  6406612 tcataggctacattatctcttcgttgtagcaaacagagtttt 6406653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 28145096 - 28145153
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    ||||||||||||||||||||| |||||||||||  |||||||  ||||||||||||||    
T  28145096 tcataggctacattatctctttgttgtagcaaacggagttttcacatttgttactatg 28145153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 31113191 - 31113150
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttt 62  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  31113191 tcataggctacattatctcttcgttgtagcaaacagagtttt 31113150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 34255631 - 34255591
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagttt 61  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  34255631 tcataggctacattatctcttcgttgtagcaaacagagttt 34255591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 5250117 - 5250075
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagttttt 63  Q
    |||||||||||||||| ||||||||||||||||| ||||||||    
T  5250117 tcataggctacattatttcttcgttgtagcaaatggagttttt 5250075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 29934590 - 29934548
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagttttt 63  Q
    |||||||||||||||||||||||||||||||||| ||| ||||    
T  29934590 tcataggctacattatctcttcgttgtagcaaatggagatttt 29934548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 26620420 - 26620388
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  26620420 tcataggctacattatctcttcgttgtagcaaa 26620388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 26726399 - 26726367
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  26726399 tcataggctacattatctcttcgttgtagcaaa 26726367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 29934656 - 29934624
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  29934656 tcataggctacattatctcttcgttgtagcaaa 29934624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 33296120 - 33296088
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  33296120 tcataggctacattatctcttcgttgtagcaaa 33296088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 34255499 - 34255467
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  34255499 tcataggctacattatctcttcgttgtagcaaa 34255467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 34255565 - 34255533
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  34255565 tcataggctacattatctcttcgttgtagcaaa 34255533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 34255697 - 34255665
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  34255697 tcataggctacattatctcttcgttgtagcaaa 34255665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 26620352 - 26620314
Alignment:
Q  25 aggctacattatctcttcgttgtagcaaatagagttttt 63  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  26620352 aggctacattatctcttcgttgtagcaaacggagttttt 26620314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 26726265 - 26726227
Alignment:
Q  25 aggctacattatctcttcgttgtagcaaatagagttttt 63  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  26726265 aggctacattatctcttcgttgtagcaaacggagttttt 26726227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 26726333 - 26726301
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    ||||| |||||||||||||||||||||||||||    
T  26726333 tcataagctacattatctcttcgttgtagcaaa 26726301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 28145297 - 28145329
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||| ||||||||||||||||||||||||||    
T  28145297 tcatagactacattatctcttcgttgtagcaaa 28145329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 90495 - 90552
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    ||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||    
T  90495 tcataggctacattatctcttcgttgtagcaaacaaagttttcgcatttgttactatg 90552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 90630 - 90662
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||||| ||||||||||||||    
T  90630 tcataggctacattatctattcgttgtagcaaa 90662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 3165906 - 3165849
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  3165906 tcataagctacattatctcttcgttgtagcaaacagagtttttgcacttgttactatg 3165849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 25336617 - 25336674
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    ||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||    
T  25336617 tcataggctacattatctcttcgttgtagcaaacagagttttcacatttgttactatg 25336674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 3166039 - 3165982
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    |||||||||||||||||||||||||||||||||| || |||| ||| |||||||||||    
T  3166039 tcataggctacattatctcttcgttgtagcaaatggaattttcgcacttgttactatg 3165982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 25336552 - 25336607
Alignment:
Q  23 ataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    |||||||||||||||||||||||||||||||  |||||||  ||||||||||||||    
T  25336552 ataggctacattatctcttcgttgtagcaaacggagttttcacatttgttactatg 25336607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 3165972 - 3165916
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    ||||||||| |||||||||||||| |||||||| |||||||||||| |||||||||||    
T  3165972 tcataggctgcattatctcttcgt-gtagcaaacagagtttttgcaattgttactatg 3165916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 5557903 - 5557959
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    ||||||||||||||||||||||||||||||||| |||| |||  ||||||||||||||    
T  5557903 tcataggctacattatctcttcgttgtagcaaacagag-tttcacatttgttactatg 5557959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 25336489 - 25336545
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    |||||||||||||||||||||||||||||||||| ||  ||| |||||||||||||||    
T  25336489 tcataggctacattatctcttcgttgtagcaaat-gaagtttcgcatttgttactatg 25336545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 5557837 - 5557893
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    |||||||||||||||||||||||||||||||||  ||| |||  ||||||||||||||    
T  5557837 tcataggctacattatctcttcgttgtagcaaacggag-tttcacatttgttactatg 5557893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 20810442 - 20810385
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    ||||||||||||||||||||||||||||||||| |||  |||  |||| |||||||||    
T  20810442 tcataggctacattatctcttcgttgtagcaaacagatatttcacattcgttactatg 20810385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 3165839 - 3165783
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactat 77  Q
    ||||| ||||||||||||||||||||||||||| | ||||||  || ||||||||||    
T  3165839 tcataagctacattatctcttcgttgtagcaaacaaagttttcacacttgttactat 3165783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 5557771 - 5557803
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  5557771 tcataggctacattatctcttcgttgtagcaaa 5557803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 20810375 - 20810343
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  20810375 tcataggctacattatctcttcgttgtagcaaa 20810343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 5557707 - 5557737
Alignment:
Q  23 ataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  5557707 ataggctacattatctcttcgttgtagcaaa 5557737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 5558036 - 5558078
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagttttt 63  Q
    |||| ||||||||||||||||||||||||||||  ||||||||    
T  5558036 tcatcggctacattatctcttcgttgtagcaaacggagttttt 5558078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 52
Target Start/End: Complemental strand, 3166104 - 3166075
Alignment:
Q  23 ataggctacattatctcttcgttgtagcaa 52  Q
    ||||||||||||||||||||||||||||||    
T  3166104 ataggctacattatctcttcgttgtagcaa 3166075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 21542112 - 21542079
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaat 54  Q
    ||||||||||||||||||||||||||||| ||||    
T  21542112 tcataggctacattatctcttcgttgtagaaaat 21542079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 25336684 - 25336725
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttt 62  Q
    |||||||||||||||||| ||||||||||||||  |||||||    
T  25336684 tcataggctacattatcttttcgttgtagcaaacggagtttt 25336725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 26082049 - 26082081
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    ||||||||||||||||| |||||||||||||||    
T  26082049 tcataggctacattatcacttcgttgtagcaaa 26082081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 26082117 - 26082149
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||||||| ||||||||||||    
T  26082117 tcataggctacattatctctccgttgtagcaaa 26082149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 31663618 - 31663564
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttact 75  Q
    ||||||||||||||||||||||||||||||||| ||||||||  |||||||||||    
T  31663618 tcataggctacattatctcttcgttgtagcaaacagagttttcacatttgttact 31663564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 5578293 - 5578236
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    ||||||||||||||||||||||||||||||||| |||| ||| ||||| |||||||||    
T  5578293 tcataggctacattatctcttcgttgtagcaaacagagatttcgcattcgttactatg 5578236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 4852584 - 4852626
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagttttt 63  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  4852584 tcataggctacattatctcttcgttgtagcaaacagagttttt 4852626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 4852653 - 4852695
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagttttt 63  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  4852653 tcataggctacattatctcttcgttgtagcaaacagagttttt 4852695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 6735421 - 6735363
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagag-tttttgcatttgttactatg 78  Q
    ||||| ||||||||||||||||||||||||||| |||| ||||| ||||||||||||||    
T  6735421 tcataagctacattatctcttcgttgtagcaaacagagatttttacatttgttactatg 6735363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 1505993 - 1506050
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    |||||||||||||||||||||||||||||||||  |||||||  |||| |||||||||    
T  1505993 tcataggctacattatctcttcgttgtagcaaacggagttttcacattcgttactatg 1506050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 13713189 - 13713230
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttt 62  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  13713189 tcataggctacattatctcttcgttgtagcaaacagagtttt 13713230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 31663484 - 31663427
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    |||||||||||||||||||||||||||||||||  |||||||  ||||| ||||||||    
T  31663484 tcataggctacattatctcttcgttgtagcaaacggagttttcacattttttactatg 31663427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 5599995 - 5600039
Alignment:
Q  19 catcataggctacattatctcttcgttgtagcaaatagagttttt 63  Q
    |||||||||||||||||||||||||||||||||||  ||||||||    
T  5599995 catcataggctacattatctcttcgttgtagcaaacggagttttt 5600039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 1506126 - 1506183
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    |||||||||| ||||||||||||||||||||||  |||||||  |||| |||||||||    
T  1506126 tcataggctatattatctcttcgttgtagcaaacggagttttcacattcgttactatg 1506183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 5578486 - 5578441
Alignment:
Q  24 taggctacattatctcttcgttgtagcaaatagagtttttgcattt 69  Q
    ||||||||||||||||||||||||||||||  ||||||| ||||||    
T  5578486 taggctacattatctcttcgttgtagcaaacggagttttcgcattt 5578441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 5599931 - 5599987
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    |||||||||||||||||||||||||||||||||  ||| |||  ||||||||||||||    
T  5599931 tcataggctacattatctcttcgttgtagcaaacggag-tttcacatttgttactatg 5599987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 13713122 - 13713163
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttt 62  Q
    |||||||||||||||||||||||||||||||||  |||||||    
T  13713122 tcataggctacattatctcttcgttgtagcaaacggagtttt 13713163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 13713322 - 13713363
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttt 62  Q
    |||||||||||||||||||||||||||||||||  |||||||    
T  13713322 tcataggctacattatctcttcgttgtagcaaacggagtttt 13713363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 14190501 - 14190557
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    |||||||||||||||||||||||||||||||||  ||| |||  ||||||||||||||    
T  14190501 tcataggctacattatctcttcgttgtagcaaacggag-tttcacatttgttactatg 14190557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 31663349 - 31663308
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttt 62  Q
    |||||||||||||||||||||||||||||||||  |||||||    
T  31663349 tcataggctacattatctcttcgttgtagcaaacggagtttt 31663308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 31663417 - 31663376
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttt 62  Q
    |||||||||||||||||||||||||||||||||  |||||||    
T  31663417 tcataggctacattatctcttcgttgtagcaaacggagtttt 31663376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 1506060 - 1506092
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  1506060 tcataggctacattatctcttcgttgtagcaaa 1506092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 1506193 - 1506225
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  1506193 tcataggctacattatctcttcgttgtagcaaa 1506225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 5599799 - 5599831
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  5599799 tcataggctacattatctcttcgttgtagcaaa 5599831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 5599865 - 5599897
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  5599865 tcataggctacattatctcttcgttgtagcaaa 5599897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 5909076 - 5909108
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  5909076 tcataggctacattatctcttcgttgtagcaaa 5909108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 5909142 - 5909174
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  5909142 tcataggctacattatctcttcgttgtagcaaa 5909174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 13702629 - 13702661
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  13702629 tcataggctacattatctcttcgttgtagcaaa 13702661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 13713256 - 13713296
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagttt 61  Q
    |||||||||||||||||||||||| |||||||| |||||||    
T  13713256 tcataggctacattatctcttcgtcgtagcaaacagagttt 13713296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 14190570 - 14190609
Alignment:
Q  24 taggctacattatctcttcgttgtagcaaatagagttttt 63  Q
    |||||||||||||||||||||||||||||| |||| ||||    
T  14190570 taggctacattatctcttcgttgtagcaaacagagatttt 14190609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 31663280 - 31663229
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgtt 72  Q
    |||||||||||||||||| ||| ||||||||||  || ||||||||||||||    
T  31663280 tcataggctacattatctattcattgtagcaaacggattttttgcatttgtt 31663229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 31663549 - 31663494
Alignment:
Q  23 ataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    |||||||||||||||||||| ||||||||||  |||||||  ||||| ||||||||    
T  31663549 ataggctacattatctcttcattgtagcaaacggagttttcacattttttactatg 31663494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 1506259 - 1506301
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagttttt 63  Q
    ||||||||||||||||||||||||||| ||||| | |||||||    
T  1506259 tcataggctacattatctcttcgttgttgcaaacatagttttt 1506301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 13713389 - 13713431
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagttttt 63  Q
    ||||||| |||||||||||||||||||||||||  ||||||||    
T  13713389 tcataggatacattatctcttcgttgtagcaaacggagttttt 13713431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 6735476 - 6735431
Alignment:
Q  33 ttatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    ||||||||||||||||| ||| |  |||||||||||||||||||||    
T  6735476 ttatctcttcgttgtagtaaacaatgtttttgcatttgttactatg 6735431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 4852723 - 4852755
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    ||||||||||||||||||||||| |||||||||    
T  4852723 tcataggctacattatctcttcggtgtagcaaa 4852755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 5578359 - 5578327
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||| ||||||||||||||||||||||||||||    
T  5578359 tcattggctacattatctcttcgttgtagcaaa 5578327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: scaffold0927
Description:

Target: scaffold0927; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 3644 - 3701
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    ||||||||||||||||||||||||||||||||| | ||||||  ||||||||||||||    
T  3644 tcataggctacattatctcttcgttgtagcaaacaaagttttcacatttgttactatg 3701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 3577 - 3634
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    ||||||||||||||||||||||||||||  |||  |||||||  ||||||||||||||    
T  3577 tcataggctacattatctcttcgttgtaataaacggagttttcacatttgttactatg 3634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 69804 - 69747
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    ||||||||||||||||||||||||||||||||| ||| ||||  ||||||||||||||    
T  69804 tcataggctacattatctcttcgttgtagcaaacagatttttgtcatttgttactatg 69747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 69873 - 69814
Alignment:
Q  19 catcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    |||||||||||| ||||||||||||||||||||||  |||||||  ||||||||||||||    
T  69873 catcataggctatattatctcttcgttgtagcaaacggagttttcacatttgttactatg 69814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 69737 - 69695
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagttttt 63  Q
    |||||||||||||||||||||| |||||||||| ||| |||||    
T  69737 tcataggctacattatctcttcattgtagcaaacagatttttt 69695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 3078612 - 3078555
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    |||||||||||||||||| ||||||||||||||  ||||||||||||| |||||||||    
T  3078612 tcataggctacattatctattcgttgtagcaaacggagtttttgcattcgttactatg 3078555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 3081347 - 3081403
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    |||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||    
T  3081347 tcataggctacattatct-ttcgttgtagcaaacggagtttttgcatttgttactatg 3081403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 15695484 - 15695427
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    ||||||||||||||||||||| |||||||||||  ||||||| |||||||||||||||    
T  15695484 tcataggctacattatctcttagttgtagcaaacggagttttcgcatttgttactatg 15695427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 15702464 - 15702407
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    ||||||||||||||||||||| |||||||||||  ||||||| |||||||||||||||    
T  15702464 tcataggctacattatctcttagttgtagcaaacggagttttcgcatttgttactatg 15702407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 21958594 - 21958537
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    |||||||||| ||||||||||||||||||||||  ||||||| |||||||||||||||    
T  21958594 tcataggctatattatctcttcgttgtagcaaacggagttttcgcatttgttactatg 21958537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 3081140 - 3081182
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagttttt 63  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  3081140 tcataggctacgttatctcttcgttgtagcaaatagagttttt 3081182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 4341296 - 4341353
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    |||||||||||||||||||||||||||||||||  |||||||  |||| |||||||||    
T  4341296 tcataggctacattatctcttcgttgtagcaaacggagttttcacattcgttactatg 4341353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 21958527 - 21958470
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    |||||||||||||||||||||||||||||||||  || | || |||||||||||||||    
T  21958527 tcataggctacattatctcttcgttgtagcaaacggaatcttcgcatttgttactatg 21958470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 48478354 - 48478398
Alignment:
Q  19 catcataggctacattatctcttcgttgtagcaaatagagttttt 63  Q
    |||||||||||||||||||||||||||||||||||  ||||||||    
T  48478354 catcataggctacattatctcttcgttgtagcaaacggagttttt 48478398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 3078692 - 3078650
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagttttt 63  Q
    ||||||||||||||||||| ||||||||||||| |||||||||    
T  3078692 tcataggctacattatctcatcgttgtagcaaacagagttttt 3078650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 42785944 - 42785902
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagttttt 63  Q
    |||||||||||||||||||||||||||||||||  ||||||||    
T  42785944 tcataggctacattatctcttcgttgtagcaaacggagttttt 42785902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 34456503 - 34456446
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    |||||| ||||||||||||||||||||||||||  |||||||  ||||| ||||||||    
T  34456503 tcatagactacattatctcttcgttgtagcaaacggagttttcacattttttactatg 34456446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 42786010 - 42785954
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    |||||||||||||||||||||||||||||||||  ||| |||  ||||||||||||||    
T  42786010 tcataggctacattatctcttcgttgtagcaaacggag-tttcacatttgttactatg 42785954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 48478290 - 48478346
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    |||||||||||||||||||||||||||||||||  ||| |||  ||||||||||||||    
T  48478290 tcataggctacattatctcttcgttgtagcaaacggag-tttcacatttgttactatg 48478346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 3078545 - 3078497
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcattt 69  Q
    |||||| ||||||||||||||||||||| |||| | |||||||||||||    
T  3078545 tcatagactacattatctcttcgttgtaacaaacaaagtttttgcattt 3078497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 4341230 - 4341262
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  4341230 tcataggctacattatctcttcgttgtagcaaa 4341262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 4341429 - 4341461
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  4341429 tcataggctacattatctcttcgttgtagcaaa 4341461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 34456370 - 34456338
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  34456370 tcataggctacattatctcttcgttgtagcaaa 34456338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 34456436 - 34456404
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  34456436 tcataggctacattatctcttcgttgtagcaaa 34456404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 48477962 - 48477994
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  48477962 tcataggctacattatctcttcgttgtagcaaa 48477994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 48478028 - 48478060
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  48478028 tcataggctacattatctcttcgttgtagcaaa 48478060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 48478094 - 48478126
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  48478094 tcataggctacattatctcttcgttgtagcaaa 48478126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 48478224 - 48478256
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  48478224 tcataggctacattatctcttcgttgtagcaaa 48478256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 4341363 - 4341419
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    ||||| |||||||||||||||||||||||||||  ||| ||| ||||| |||||||||    
T  4341363 tcataagctacattatctcttcgttgtagcaaacggag-tttcgcattcgttactatg 4341419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 31346871 - 31346814
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    ||||||||||||||||||||||||||||||||| ||||||||  ||||| ||||||||    
T  31346871 tcataggctacattatctcttcgttgtagcaaacagagttttcacattttttactatg 31346814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 31346988 - 31346934
Alignment:
Q  23 ataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactat 77  Q
    |||||||||||||||||||||||||||||||  |||||||  |||||||||||||    
T  31346988 ataggctacattatctcttcgttgtagcaaacggagttttcacatttgttactat 31346934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 31314999 - 31315056
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    |||||||||||||||||||||||||||||||||  |||||||  ||||| ||||||||    
T  31314999 tcataggctacattatctcttcgttgtagcaaacggagttttcacattttttactatg 31315056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 31315066 - 31315107
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttt 62  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  31315066 tcataggctacattatctcttcgttgtagcaaacagagtttt 31315107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 31315136 - 31315177
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttt 62  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  31315136 tcataggctacattatctcttcgttgtagcaaacagagtttt 31315177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 31347124 - 31347067
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    |||||||||||||||||||||||||||||||||  |||||||  ||||| ||||||||    
T  31347124 tcataggctacattatctcttcgttgtagcaaacggagttttcacattttttactatg 31347067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 31347057 - 31347000
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    ||||| |||||||||||||||||||||||||||  |||||||  ||||| ||||||||    
T  31347057 tcatatgctacattatctcttcgttgtagcaaacggagttttcacattttttactatg 31347000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 2743357 - 2743325
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  2743357 tcataggctacattatctcttcgttgtagcaaa 2743325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 2743423 - 2743391
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  2743423 tcataggctacattatctcttcgttgtagcaaa 2743391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 2743489 - 2743457
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  2743489 tcataggctacattatctcttcgttgtagcaaa 2743457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 2743555 - 2743523
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  2743555 tcataggctacattatctcttcgttgtagcaaa 2743523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 11951315 - 11951283
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  11951315 tcataggctacattatctcttcgttgtagcaaa 11951283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 31315204 - 31315236
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  31315204 tcataggctacattatctcttcgttgtagcaaa 31315236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 15088584 - 15088641
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    ||||| ||||||||||||||||||| |||||||  |||||||||||||||||||||||    
T  15088584 tcatatgctacattatctcttcgttttagcaaacggagtttttgcatttgttactatg 15088641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 22207981 - 22208038
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    ||||||||||||||||||||| ||||||||||| ||| |||||| |||||||||||||    
T  22207981 tcataggctacattatctcttggttgtagcaaacagaatttttgaatttgttactatg 22208038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 22211192 - 22211249
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    ||||| ||||||||||||||||||| |||||||  |||||||||||||||||||||||    
T  22211192 tcatatgctacattatctcttcgttttagcaaacggagtttttgcatttgttactatg 22211249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 22207778 - 22207819
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttt 62  Q
    |||||||||||||||||||||||||||||||||  |||||||    
T  22207778 tcataggctacattatctcttcgttgtagcaaacggagtttt 22207819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 51844365 - 51844422
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    ||||||||||||||||||||||| |||||||||  ||| ||| ||||| |||||||||    
T  51844365 tcataggctacattatctcttcgctgtagcaaacggagatttcgcattcgttactatg 51844422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 14114794 - 14114754
Alignment:
Q  23 ataggctacattatctcttcgttgtagcaaatagagttttt 63  Q
    |||||||||||||||||||||||||||||||  ||||||||    
T  14114794 ataggctacattatctcttcgttgtagcaaacggagttttt 14114754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 14114859 - 14114823
Alignment:
Q  27 gctacattatctcttcgttgtagcaaatagagttttt 63  Q
    ||||||||||||||||||||||||||| |||||||||    
T  14114859 gctacattatctcttcgttgtagcaaacagagttttt 14114823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 22207709 - 22207741
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  22207709 tcataggctacattatctcttcgttgtagcaaa 22207741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 22207845 - 22207877
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  22207845 tcataggctacattatctcttcgttgtagcaaa 22207877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 22208048 - 22208080
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  22208048 tcataggctacattatctcttcgttgtagcaaa 22208080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 22208115 - 22208147
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  22208115 tcataggctacattatctcttcgttgtagcaaa 22208147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 14114933 - 14114894
Alignment:
Q  24 taggctacattatctcttcgttgtagcaaatagagttttt 63  Q
    |||||||||||||||||||||||||||||| ||| |||||    
T  14114933 taggctacattatctcttcgttgtagcaaacagaattttt 14114894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 22207914 - 22207955
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttt 62  Q
    ||||||| |||||||||||||||||||||||||  |||||||    
T  22207914 tcataggttacattatctcttcgttgtagcaaacggagtttt 22207955  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 51844298 - 51844355
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    ||||||||| | |||||| || |||| ||||||||| ||||| |||||||||||||||    
T  51844298 tcataggctgcgttatctttttgttgcagcaaatagtgttttcgcatttgttactatg 51844355  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 51844432 - 51844489
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    ||||| |||||||||||||||||||||||||||  ||| ||| ||||| |||| ||||    
T  51844432 tcataagctacattatctcttcgttgtagcaaacggagatttcgcattcgttattatg 51844489  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 41528656 - 41528698
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagttttt 63  Q
    |||||||||||||||||||||||||||||||||  ||||||||    
T  41528656 tcataggctacattatctcttcgttgtagcaaacggagttttt 41528698  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 41528458 - 41528514
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    |||||||||||||||||||||||||||||||||  ||| |||  ||||||||||||||    
T  41528458 tcataggctacattatctcttcgttgtagcaaacggag-tttcacatttgttactatg 41528514  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 41528524 - 41528580
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    |||||||||||||||||||||||||||||||||  ||| |||  ||||||||||||||    
T  41528524 tcataggctacattatctcttcgttgtagcaaacggag-tttcacatttgttactatg 41528580  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 41528590 - 41528646
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttttgcatttgttactatg 78  Q
    |||||||||||||||||||||||||||||||||  ||| |||  ||||||||||||||    
T  41528590 tcataggctacattatctcttcgttgtagcaaacggag-tttcacatttgttactatg 41528646  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 37368958 - 37368926
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  37368958 tcataggctacattatctcttcgttgtagcaaa 37368926  T

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Target: scaffold0060 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 39968 - 39927
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaatagagtttt 62  Q
    ||||||||||||||||||||||||||||||||| ||| ||||    
T  39968 tcataggctacattatctcttcgttgtagcaaacagaatttt 39927  T

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Target: scaffold0060; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 40035 - 40003
Alignment:
Q  21 tcataggctacattatctcttcgttgtagcaaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  40035 tcataggctacattatctcttcgttgtagcaaa 40003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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