View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_87 (Length: 351)
Name: NF10261A_low_87
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_87 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 15956921 - 15956571
Alignment:
| Q |
1 |
gcatgtccaataatatcagcattaacagtgaacccaagtaagagtacatcaccaatatacttactccctaggtttccaaacaaacctgaaagcnnnnnnn |
100 |
Q |
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| T |
15956921 |
gcatctccaatgatatcagcattaacagtgaacccaagtaagagtacatcaccaatatacttactccctaggtttccaaacaaacctgaaagcaaaaaaa |
15956822 |
T |
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| Q |
101 |
gagattggagaaaaccacttgaagtaccttcacaattgtggttgctccatgttggtaatgcctttgaagttaaacaagctcatgggaatttggaaataca |
200 |
Q |
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| T |
15956821 |
gagattggagaaaaccacttgaagtaccttcacaattgtggttgctccatgttggtaatgcctttgaagttaaacaagctcatgggaatttggaaataca |
15956722 |
T |
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| Q |
201 |
aatacaagctagtgcttgctcttaccaatggttcaacttccgcaaattatttggtatttatatagttttatatattgatccattcacttaaaatattaaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
15956721 |
aatacaagctagtgcttgctcttaccaatggttcaacttccgcaaattatttggtatgtatatagttttatatattgatacattcacttaaaatattaaa |
15956622 |
T |
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| Q |
301 |
acaaattaaaagtaatttagataactatcttaataaagattaaaagagttg |
351 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
15956621 |
acaaattaaaagtaatttagataactatcttaataaatattaaaagagttg |
15956571 |
T |
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