View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_9 (Length: 489)
Name: NF10261A_low_9
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 5 - 470
Target Start/End: Original strand, 32036120 - 32036585
Alignment:
| Q |
5 |
tatcattgagatcattagaagtggaaaactcaggaaatggaggcaaagtaacatcaggatgcaaactatcaatcacagaaggagctgttgtggtggtgat |
104 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32036120 |
tatcattgagatcatcagaagtggaaaactcaggaaatggaggcaaagtaacatccgaatgcaaactatcaatcacagaaggagctgttgtggtggtgat |
32036219 |
T |
|
| Q |
105 |
tgtagcagctgcagcaactgcgcgacaacgagcaagacgttccttagcaatggccaaatcatgctgaagttccatcatcttcctttgcaacatagctatg |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32036220 |
tgtagcagctgcagcaactgcgcgacaacgagcaagacgttccttagcaatggccaaatcatgctgaagttccatcatcttcctttgcaacatagctatg |
32036319 |
T |
|
| Q |
205 |
gaaccaatgcatccataaactgggtctctaagccttgcttcagcttcataagcaagagaattcactgtgtcttctctttgtttttctggcacttcaatga |
304 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32036320 |
gaaccaatgcatccgtaaactgggtctctaagccttgcttcagcttcataagcaagagaattcactgtgtcttctctttgtttttctggcacttcaatga |
32036419 |
T |
|
| Q |
305 |
gtatcttgctaacattgcttgctccaaatgctttgtgaactttggcgaatttcttgcactcattagaatggaagtaaggtgcaaataagcaatctggtgt |
404 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32036420 |
gtatcttgctaacattgcttgctccaaatactttgtgaactttggcgaatttcttgcactcattagaatggaagtaaggtgcaaataagcaatctggtgt |
32036519 |
T |
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| Q |
405 |
gcatcttcttttcaataatttgcaagctgcacaagatgagcttgaacgtggctcataaccctttat |
470 |
Q |
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| T |
32036520 |
gcatcttcttttcaataatttgcaagctgcacaagatgagcttgaacgtggctcataaccctttat |
32036585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 138; Significance: 6e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 130 - 467
Target Start/End: Original strand, 35808612 - 35808949
Alignment:
| Q |
130 |
caacgagcaagacgttccttagcaatggccaaatcatgctgaagttccatcatcttcctttgcaacatagctatggaaccaatgcatccataaactgggt |
229 |
Q |
| |
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|||||||| || || ||||| |||||||| | |||||| |||||||| | ||||||||||||||| | ||||| | ||| ||||||||||| || |||| |
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| T |
35808612 |
caacgagccaggcgatcctttgcaatggcaagatcatgttgaagttcaaccatcttcctttgcaaaagtgctatagcacctatgcatccatagacagggt |
35808711 |
T |
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| Q |
230 |
ctctaagccttgcttcagcttcataagcaagagaattcactgtgtcttctctttgtttttctggcacttcaatgagtatcttgctaacattgcttgctcc |
329 |
Q |
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| T |
35808712 |
ctctaagccttgcatcagcttcataagccaaagaattcacagtttcttccctttgttcctctggaacttcaatcagaatcttgctcacattgcttgctcc |
35808811 |
T |
|
| Q |
330 |
aaatgctttgtgaactttggcgaatttcttgcactcattagaatggaagtaaggtgcaaataagcaatctggtgtgcatcttcttttcaataatttgcaa |
429 |
Q |
| |
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|||| ||||||||||||| ||||||||||||||||||| || | ||||| || ||||||| |||| |||| ||||||||||||||| |||||||| |
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| T |
35808812 |
aaatactttgtgaactttcgcgaatttcttgcactcatcggagcgaaagtatggcgcaaatatacaatttggtatgcatcttcttttcagaaatttgcag |
35808911 |
T |
|
| Q |
430 |
gctgcacaagatgagcttgaacgtggctcataaccctt |
467 |
Q |
| |
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||||||||||| || ||||| | ||| ||||||||||| |
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| T |
35808912 |
gctgcacaagaggaacttgaccttggttcataaccctt |
35808949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 217 - 284
Target Start/End: Complemental strand, 591351 - 591284
Alignment:
| Q |
217 |
ccataaactgggtctctaagccttgcttcagcttcataagcaagagaattcactgtgtcttctctttg |
284 |
Q |
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| T |
591351 |
ccatacactggatctttaatccttgcttcagcttcataagctagagaattcaccgtatcttctctttg |
591284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 284
Target Start/End: Complemental strand, 600908 - 600861
Alignment:
| Q |
237 |
ccttgcttcagcttcataagcaagagaattcactgtgtcttctctttg |
284 |
Q |
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||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
600908 |
ccttgcttcagcttcataagctagagaattcactgtatcttctctttg |
600861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 284
Target Start/End: Original strand, 12360671 - 12360738
Alignment:
| Q |
217 |
ccataaactgggtctctaagccttgcttcagcttcataagcaagagaattcactgtgtcttctctttg |
284 |
Q |
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||||||||||| ||| | | |||||| |||||||||||||||||||| ||||||| ||||| ||||| |
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| T |
12360671 |
ccataaactggatcttttatccttgcctcagcttcataagcaagagagttcactgcatcttccctttg |
12360738 |
T |
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