View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_94 (Length: 343)
Name: NF10261A_low_94
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_94 |
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| [»] scaffold0288 (1 HSPs) |
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| [»] scaffold0475 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 9e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 10 - 337
Target Start/End: Complemental strand, 49330863 - 49330543
Alignment:
| Q |
10 |
aatatcaaatggaggaatagatacaaaacaacaaatcaacttattcattgatatcctcctagtcaacacatgtgatgtattaattcccttcttgcgaacg |
109 |
Q |
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||||||| |||||||||||||||||||||||||| ||||||| |||||| |||||| ||| |||||||||||||||||| ||||||||||||||||| |
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| T |
49330863 |
aatatcacatggaggaatagatacaaaacaacaattcaacttgttcattactatcct---agttaacacatgtgatgtattacttcccttcttgcgaacg |
49330767 |
T |
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| Q |
110 |
gcatagtaacataaaccaaacattataattttcctttgtaatttttcgacattgttttgctaaattcttcaaataaaaaacagcgaaattgttcagttga |
209 |
Q |
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|||| ||||||||||| || |||||||||||||||||||| ||||| ||| |||||||||||||| | || ||||||||||||||||||||||| |||| |
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| T |
49330766 |
acatactaacataaacctaagattataattttcctttgtaacttttccacactgttttgctaaattttacatataaaaaacagcgaaattgttcaattga |
49330667 |
T |
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| Q |
210 |
gttgcttatattacagcttccccatccaatttgattatcaagtctgtgctacctgctgattcgggaaaaatgtagagcatcacgatttgcttatgattcc |
309 |
Q |
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| T |
49330666 |
gttgcttatatttcagtttcaccatccaatttgattctcaagtctgtgctacctaccgattcggaaaaaatgtagagcatcacgatttgcttctg----t |
49330571 |
T |
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| Q |
310 |
gctatttcagcttcatcaatttcataga |
337 |
Q |
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|| |||| |||||||||||||||||||| |
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| T |
49330570 |
gccattttagcttcatcaatttcataga |
49330543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 203 - 336
Target Start/End: Original strand, 4660393 - 4660526
Alignment:
| Q |
203 |
cagttgagttgcttatattacagcttccccatccaatttgattatcaagtctgtgctacctgctgattcgggaaaaatgtagagcatcacgatttgctta |
302 |
Q |
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| T |
4660393 |
cagttgagttgcttatattacaacttccccatccaatttgattatcaagtctgtgctacctgctgattcgggaaaaatgtagagcatcacgatttgctta |
4660492 |
T |
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| Q |
303 |
tgattccgctatttcagcttcatcaatttcatag |
336 |
Q |
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| T |
4660493 |
tgattccgctattttagcttcatcaatttcatag |
4660526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 203 - 333
Target Start/End: Original strand, 20558 - 20688
Alignment:
| Q |
203 |
cagttgagttgcttatattacagcttccccatccaatttgattatcaagtctgtgctacctgctgattcgggaaaaatgtagagcatcacgatttgctta |
302 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||| |||||||||| || |||| |||||| ||||||||||||||||||| ||||||||||| |
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| T |
20558 |
cagtggagttgcttatattacaacttccccatccaatttgataatcaagtctgggccacctcctgatttgggaaaaatgtagagcatcccgatttgctta |
20657 |
T |
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| Q |
303 |
tgattccgctatttcagcttcatcaatttca |
333 |
Q |
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|||||||||||||| ||||| ||||| |||| |
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| T |
20658 |
tgattccgctattttagctttatcaaattca |
20688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 203 - 283
Target Start/End: Original strand, 7691 - 7771
Alignment:
| Q |
203 |
cagttgagttgcttatattacagcttccccatccaatttgattatcaagtctgtgctacctgctgattcgggaaaaatgta |
283 |
Q |
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|||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
7691 |
cagttgagttgcttatattacaacttccccctccgatttgattatcaagtctgtgctacctcctgattcaggaaaaatgta |
7771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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