View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10261A_low_99 (Length: 341)
Name: NF10261A_low_99
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_99 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 187 - 335
Target Start/End: Original strand, 34152159 - 34152307
Alignment:
| Q |
187 |
atcatcgtcgatcatgactttgatcattgtcgaccaacactttaacaatcgtcgaccatcactatgattatctataatcacatatctgatcactataggc |
286 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
34152159 |
atcatcgccgatcatgactttgatcattgtcgaccaacactctaacaatcgtcgaccaccactatgactatctataatcacatatctggccactataggc |
34152258 |
T |
|
| Q |
287 |
caccacttagaccacatctaatcgcatatctgaccaccacttgaactac |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34152259 |
caccacttagaccacatctaatcgcatatctgaccaccacttgaactac |
34152307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 34151824 - 34151893
Alignment:
| Q |
11 |
tggttgcaagttttcggtcttaagaaaaatttgaaaacaaaacatgttagagtaaattgaggataattgg |
80 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34151824 |
tggttgcaagttttcggtcttaagataaatttgaaaacaaaacatgttagagtaaattgaagataattgg |
34151893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University