View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10261_high_1 (Length: 822)

Name: NF10261_high_1
Description: NF10261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10261_high_1
NF10261_high_1
[»] chr2 (1 HSPs)
chr2 (1-808)||(41822338-41823150)


Alignment Details
Target: chr2 (Bit Score: 707; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 707; E-Value: 0
Query Start/End: Original strand, 1 - 808
Target Start/End: Complemental strand, 41823150 - 41822338
Alignment:
Q  1 attattgcagattttacatgcttttcacctgttaatttcagttgagtccttccattgatttcatagctagagtttggagtttcaaaaccttgagttactg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41823150 attattgcagattttacatgcttttcacctgttaatttcagttgagtccttccattgatttcatagctagagtttggagtttcaaaaccttgagttactg 41823051  T
Q  101 ttatttttcacatgcttttcacctttccttttcattctgatggtttatatcgtttgtgttctttgtttgagtgagagggtctattcattttgattctgtt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41823050 ttatttttcacatgcttttcacctttccttttcattctgatggtttatatcgtttgtgttttttgtttgagtgagagggtctattcattttgattctgtt 41822951  T
Q  201 aaagcattttattatctttccaacactgttgttaatttgatgcttattccttgatacgtattcaattattttgttggtcagtatttgaccacataattaa 300  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41822950 aaagcattttattatctttccatcactgttattaatttgatgcttattccttgatacatattcaattattttgttggtcagtatttgaccacataattaa 41822851  T
Q  301 tatggagcatatatatatgtgctttcttgcctttaatttatgatatactcttaatatcacattgctaaacattggaccaactttttgtttcttctaa--- 397  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||       
T  41822850 tatggagaatatatatatgtgctttcttgcctttaatttatgatatactattaatatcacattgctaaacattggaccaactttttgtttcttctaattt 41822751  T
Q  398 -cgnnnnnnnnatcactaactttataactcttcagcaacttcttgttctattgtaactctcttctgtttttcacctaaaacagtgaattggcacttcaga 496  Q
               ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41822750 tttttttttttatcactaactttataactcttcaacaacttcttgttctattgtaactctcttctgtttttcacctaaaacagtgaattggcacttcaga 41822651  T
Q  497 gatggcagagaaagagagtttgttttctataggtgattggatgagaataccaatttgcactttcttcaaggatgctaggtataccattttttgtcctatt 596  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41822650 gatggcagagaaagagagtttgttttctataggtgattggatgagaataccaatttgcactttcttcaaggatgctaggtataccattttttgtcctatt 41822551  T
Q  597 tcctctacatattttcaattattgtgtttaatgattttgaaatttaagttctaattcctctagttagcaattgtatttttaggtgatgcagagtgatgag 696  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41822550 tcctctacatattttcaattattgtgtttaatgattttgaaatttaagttctaattcctctagttagcaattgtatttttaggtgatgcagagtgatgag 41822451  T
Q  697 ctgttatgtatgatgaactttacctcgtatttttagttca-nnnnnnngttctttcagtagttgtttgtgatgttcttttcataattccatgtacctagg 795  Q
    ||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41822450 ctgttatgtatgatgaactttacctcgtatttttagttcattttttttgttctttcagtagttgtttgtgatgttcttttcataattccatgtacctagg 41822351  T
Q  796 tttaactcttgat 808  Q
    |||||||||||||    
T  41822350 tttaactcttgat 41822338  T

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