View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10261_high_11 (Length: 351)

Name: NF10261_high_11
Description: NF10261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10261_high_11
NF10261_high_11
[»] chr5 (4 HSPs)
chr5 (77-331)||(27639396-27639650)
chr5 (2-71)||(27639260-27639329)
chr5 (134-223)||(3465307-3465396)
chr5 (144-225)||(41650524-41650605)
[»] chr4 (9 HSPs)
chr4 (95-294)||(19469578-19469776)
chr4 (95-226)||(45068090-45068221)
chr4 (125-294)||(50655070-50655239)
chr4 (127-205)||(4866798-4866876)
chr4 (136-224)||(23012347-23012435)
chr4 (138-226)||(30251406-30251494)
chr4 (134-205)||(44616665-44616736)
chr4 (134-226)||(24065104-24065196)
chr4 (163-224)||(48309656-48309717)
[»] chr6 (2 HSPs)
chr6 (134-294)||(51924-52084)
chr6 (98-294)||(9557337-9557533)
[»] chr2 (3 HSPs)
chr2 (136-292)||(43411446-43411602)
chr2 (163-224)||(10994432-10994493)
chr2 (136-227)||(41074569-41074659)
[»] chr1 (8 HSPs)
chr1 (136-223)||(13297595-13297682)
chr1 (134-248)||(52372646-52372760)
chr1 (125-226)||(44503950-44504051)
chr1 (138-226)||(21926617-21926704)
chr1 (104-223)||(9644372-9644491)
chr1 (104-226)||(40799649-40799771)
chr1 (136-226)||(25410579-25410669)
chr1 (163-224)||(51871203-51871264)
[»] chr7 (4 HSPs)
chr7 (136-226)||(40188193-40188283)
chr7 (164-294)||(46028474-46028604)
chr7 (136-226)||(23176908-23176998)
chr7 (136-223)||(12258376-12258463)
[»] chr3 (7 HSPs)
chr3 (139-248)||(26982040-26982149)
chr3 (136-226)||(34213146-34213236)
chr3 (160-224)||(1045402-1045466)
chr3 (166-224)||(2833336-2833394)
chr3 (178-218)||(1762040-1762080)
chr3 (136-226)||(4778030-4778120)
chr3 (136-224)||(41640824-41640912)
[»] chr8 (8 HSPs)
chr8 (136-224)||(24604837-24604925)
chr8 (134-226)||(34152023-34152115)
chr8 (125-226)||(42032731-42032832)
chr8 (134-226)||(7656805-7656897)
chr8 (134-223)||(42241233-42241322)
chr8 (178-226)||(41927018-41927066)
chr8 (94-205)||(32073896-32074007)
chr8 (163-224)||(36650463-36650524)
[»] scaffold0329 (1 HSPs)
scaffold0329 (134-225)||(18430-18521)
[»] scaffold0042 (1 HSPs)
scaffold0042 (155-223)||(83243-83311)


Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 77 - 331
Target Start/End: Original strand, 27639396 - 27639650
Alignment:
Q  77 cgcgcgaaccaaggtaggccaccaccacaaaaccctaccaattcctgtaaaggacaagttgcacctcccactcatgataagtgcaagaactagcaggaca 176  Q
    |||| ||||||||||||||||||||||||||||||||| |||| | |||||||||  ||||||||||| |||||||||||||||||||||||||||||||    
T  27639396 cgcgtgaaccaaggtaggccaccaccacaaaaccctactaatttcagtaaaggacgggttgcacctcctactcatgataagtgcaagaactagcaggaca 27639495  T
Q  177 tttagccatgaaccacttccaagctaagaatttagctctatccaccacagtctgcccactatgggtgccacccgcaaacataaagtcattcttgtaagtc 276  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||  ||||||||    
T  27639496 tttagccatgaaccacttccaagctaagaattttgctctatccaccacagtctgctcactatgggtgccaccagcaaacataaagtcatttatgtaagtc 27639595  T
Q  277 cagatggtccaaataacatgtttagactcaaacataagtccagatgacacatctt 331  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27639596 cagatggtccaaataacatgtttagactcaaacataagttcagatgacacatctt 27639650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 27639260 - 27639329
Alignment:
Q  2 aggagcacagatccaccaaaaagagcacaaaacacctgccaccaaaggaggaaggccaagagagaaccca 71  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27639260 aggagcacagatccaccaaaaagagcgcaaaacacctgccaccaaaggaggaaggccaagagagaaccca 27639329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 134 - 223
Target Start/End: Original strand, 3465307 - 3465396
Alignment:
Q  134 gttgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagaatttagctctatccacca 223  Q
    ||||||||||||||||||| |||||||| ||||||| || ||  || |||| ||| |||||||||||||||| ||| |||||||||||||    
T  3465307 gttgcacctcccactcatggtaagtgcaggaactagtagaacgcttcgccaagaaacacttccaagctaagagtttcgctctatccacca 3465396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 144 - 225
Target Start/End: Complemental strand, 41650605 - 41650524
Alignment:
Q  144 ccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagaatttagctctatccaccaca 225  Q
    ||||||||| |||||||| || |||||||  || ||||||| |||||||||||||||||||| ||| |||||||||||||||    
T  41650605 ccactcatggtaagtgcaggagctagcagagcacttagccaggaaccacttccaagctaagagtttcgctctatccaccaca 41650524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 95 - 294
Target Start/End: Complemental strand, 19469776 - 19469578
Alignment:
Q  95 ccaccaccacaaaaccctaccaattcctgtaaaggacaagttgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccactt 194  Q
    |||||||||||||| |||||| || ||   |||||||| | | |||||||||||||||||||||||| ||||||||| |||| ||| | | |||||||||    
T  19469776 ccaccaccacaaaatcctaccgatgccaacaaaggacaggctacacctcccactcatgataagtgcaggaactagca-gacacttaactaggaaccactt 19469678  T
Q  195 ccaagctaagaatttagctctatccaccacagtctgcccactatgggtgccacccgcaaacataaagtcattcttgtaagtccagatggtccaaataaca 294  Q
    |||||||||||| || |||||||||||||||  || | ||  ||||| |||||| ||||| | || |||||||  | |||| ||||||||||||||||||    
T  19469677 ccaagctaagaactttgctctatccaccacatgctcctcagaatgggcgccaccagcaaataaaatgtcattccaggaagttcagatggtccaaataaca 19469578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 95 - 226
Target Start/End: Original strand, 45068090 - 45068221
Alignment:
Q  95 ccaccaccacaaaaccctaccaattcctgtaaaggacaagttgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccactt 194  Q
    ||||||||||||||||||||  || ||   |||||||  |||||||||||| ||||||||||||| | |||||  |||| || ||||||| |||||||||    
T  45068090 ccaccaccacaaaaccctactgataccaacaaaggacgggttgcacctccccctcatgataagtgtaggaactgccagggcacttagccaggaaccactt 45068189  T
Q  195 ccaagctaagaatttagctctatccaccacag 226  Q
    ||||||||||| ||||||||||||||| ||||    
T  45068190 ccaagctaagagtttagctctatccactacag 45068221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 125 - 294
Target Start/End: Original strand, 50655070 - 50655239
Alignment:
Q  125 aaaggacaagttgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagaatttagctctatccaccac 224  Q
    |||||||| |||||||||||||||||||  ||  |||||||||||||||||| ||||||| |||||||||||||||||||| ||||||   ||||| |||    
T  50655070 aaaggacaggttgcacctcccactcatggaaaaagcaagaactagcaggacacttagccaggaaccacttccaagctaagagtttagcctgatccatcac 50655169  T
Q  225 agtctgcccactatgggtgccacccgcaaacataaagtcattcttgtaagtccagatggtccaaataaca 294  Q
    || || | | ||  ||| |||||| | ||| |||| ||||||   | | |||||||||||||||||||||    
T  50655170 agactcctctctgagggcgccaccagaaaagataaggtcattacgggacgtccagatggtccaaataaca 50655239  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 127 - 205
Target Start/End: Complemental strand, 4866876 - 4866798
Alignment:
Q  127 aggacaagttgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaaga 205  Q
    |||||| |||||||||||||||||||||||||||||| ||||||| | || ||||||| ||||||||||||||||||||    
T  4866876 aggacaggttgcacctcccactcatgataagtgcaaggactagcaaggcacttagccaggaaccacttccaagctaaga 4866798  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 224
Target Start/End: Original strand, 23012347 - 23012435
Alignment:
Q  136 tgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagaatttagctctatccaccac 224  Q
    ||||||||||| ||||||||||||||  ||||||||  ||| |||||||||||||| |||||| |||||| |||  |||||||||||||    
T  23012347 tgcacctcccattcatgataagtgcagaaactagcacaacacttagccatgaaccaattccaaactaagagtttcactctatccaccac 23012435  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 30251406 - 30251494
Alignment:
Q  138 cacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagaatttagctctatccaccacag 226  Q
    ||||||||||||||||  || |||||||||  |||| || ||||||| ||||||||| ||||| |||| |||  |||||||||||||||    
T  30251406 cacctcccactcatgaacagagcaagaacttccagggcacttagccaggaaccactttcaagccaagagtttcactctatccaccacag 30251494  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 205
Target Start/End: Original strand, 44616665 - 44616736
Alignment:
Q  134 gttgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaaga 205  Q
    ||||||||||||||||||  |||||||||||| ||||| | |  |||||||||| |||||| ||||||||||    
T  44616665 gttgcacctcccactcatcgtaagtgcaagaattagcaaggcccttagccatgagccacttacaagctaaga 44616736  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 226
Target Start/End: Original strand, 24065104 - 24065196
Alignment:
Q  134 gttgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagaatttagctctatccaccacag 226  Q
    |||| |||||||| |||| ||||   || |||||||||||  | |||||||||||||||||||| | ||||| |||  |||||||||||||||    
T  24065104 gttgtacctcccattcataataacaacaggaactagcagggtacttagccatgaaccacttccaggttaagagtttcactctatccaccacag 24065196  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 48309656 - 48309717
Alignment:
Q  163 gaactagcaggacatttagccatgaaccacttccaagctaagaatttagctctatccaccac 224  Q
    |||||||||||| | ||||||  |||| ||||||||||||||| |||  |||||||||||||    
T  48309656 gaactagcaggaaacttagcccggaacgacttccaagctaagagtttcactctatccaccac 48309717  T

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Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 134 - 294
Target Start/End: Complemental strand, 52084 - 51924
Alignment:
Q  134 gttgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagaatttagctctatccaccacagtctgccc 233  Q
    ||||||||||||||||||   ||||||||||||||||| |||| ||||||| |||||||||||||||||||| |||||||| |||||||| || || | |    
T  52084 gttgcacctcccactcatataaagtgcaagaactagcaagacacttagccaggaaccacttccaagctaagagtttagctcgatccaccataggctcctc 51985  T
Q  234 actatgggtgccacccgcaaacataaagtcattcttgtaagtccagatggtccaaataaca 294  Q
     ||  ||| |||||| | ||| |||| ||||||   | | |||||||||||||||||||||    
T  51984 tctgagggagccaccagaaaagataaggtcattacgggacgtccagatggtccaaataaca 51924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 98 - 294
Target Start/End: Original strand, 9557337 - 9557533
Alignment:
Q  98 ccaccacaaaaccctaccaattcctgtaaaggacaagttgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttcca 197  Q
    ||||||| ||||||||||||  || | |||||||  | |||||||||||||||||||||||||| || ||||||||||| |||| || ||| ||||||||    
T  9557337 ccaccaccaaaccctaccaaagccagcaaaggacgggctgcacctcccactcatgataagtgcaggagctagcaggacacttagtcaggaatcacttcca 9557436  T
Q  198 agctaagaatttagctctatccaccacagtctgcccactatgggtgccacccgcaaacataaagtcattcttgtaagtccagatggtccaaataaca 294  Q
    |||||||||||| || | ||||||||| | |    ||| |||||||||||| ||| | |||| ||||||   | | ||| |||||||||||||||||    
T  9557437 agctaagaattttgccccatccaccaccgacctatcacaatgggtgccaccagcagaaataaggtcatttcgggacgtcaagatggtccaaataaca 9557533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 136 - 292
Target Start/End: Complemental strand, 43411602 - 43411446
Alignment:
Q  136 tgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagaatttagctctatccaccacagtctgcccac 235  Q
    |||||||||||||||||||||||||| || ||||||||||| ||||||| ||| ||||| |||||||||| ||| ||||||||||||| || || | |||    
T  43411602 tgcacctcccactcatgataagtgcaggagctagcaggacacttagccaggaaacactttcaagctaagagtttcgctctatccaccaaagactccacac 43411503  T
Q  236 tatgggtgccacccgcaaacataaagtcattcttgtaagtccagatggtccaaataa 292  Q
     | | |  ||||| | ||||| || |||||||| | | |||||||||||||||||||    
T  43411502 cacgagcaccaccagaaaacacaaggtcattctgggacgtccagatggtccaaataa 43411446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 10994493 - 10994432
Alignment:
Q  163 gaactagcaggacatttagccatgaaccacttccaagctaagaatttagctctatccaccac 224  Q
    ||||||||||| || ||||||| |||||||||||||||||||| |||| |||||||||||||    
T  10994493 gaactagcagggcacttagccaggaaccacttccaagctaagagtttaactctatccaccac 10994432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 227
Target Start/End: Original strand, 41074569 - 41074659
Alignment:
Q  136 tgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagaatttagctctatccaccacagt 227  Q
    ||||||| |||||||||| ||||| ||| ||||||||| || ||||||| ||||||||| |||||||||| ||| ||| | |||||||||||    
T  41074569 tgcaccttccactcatgaaaagtg-aaggactagcagggcacttagccaggaaccactttcaagctaagagtttcgctttgtccaccacagt 41074659  T

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Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 136 - 223
Target Start/End: Complemental strand, 13297682 - 13297595
Alignment:
Q  136 tgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagaatttagctctatccacca 223  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| || |||||||||| |||  ||||||||||||    
T  13297682 tgcacctcccactcatgataagtgcaggaactagcaggacacttagccatgaaccaatttcaagctaagagtttcactctatccacca 13297595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 134 - 248
Target Start/End: Complemental strand, 52372760 - 52372646
Alignment:
Q  134 gttgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagaatttagctctatccaccacagtctgccc 233  Q
    |||||||||||||||||| | ||| ||| ||||||||||| ||  |||||| |||||||||| ||||||||| ||| |||||||||||||||| |  | |    
T  52372760 gttgcacctcccactcataaaaagagcaggaactagcagggcacctagccaggaaccacttctaagctaagagtttcgctctatccaccacagacccctc 52372661  T
Q  234 actatgggtgccacc 248  Q
    |||||||| ||||||    
T  52372660 actatgggcgccacc 52372646  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 44503950 - 44504051
Alignment:
Q  125 aaaggacaagttgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagaatttagctctatccaccac 224  Q
    ||||||| || |||||||||||||||||| ||| ||| |||||| || |||| |||| |||||||||||||||||||||||  ||  || ||||||||||    
T  44503950 aaaggacgagctgcacctcccactcatgaaaagagcaggaactaccacgacacttagtcatgaaccacttccaagctaagagcttcactttatccaccac 44504049  T
Q  225 ag 226  Q
    ||    
T  44504050 ag 44504051  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 226
Target Start/End: Complemental strand, 21926704 - 21926617
Alignment:
Q  138 cacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagaatttagctctatccaccacag 226  Q
    ||||||||||||||||||||  || ||||||||||| || ||||||| |||||||||||| ||||||| |||  |||||||||||||||    
T  21926704 cacctcccactcatgataagaacatgaactagcagggcacttagcca-gaaccacttccaggctaagagtttcactctatccaccacag 21926617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 104 - 223
Target Start/End: Complemental strand, 9644491 - 9644372
Alignment:
Q  104 caaaaccctaccaattcctgtaaaggacaagttgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaa 203  Q
    |||||||||||| || || | ||||||| || || |||||||| |||||| | | ||||||||||| |||||| ||||| | ||||||||||||| | ||    
T  9644491 caaaaccctaccgatgccagcaaaggacgagatgtacctcccattcatgaaaggagcaagaactagtaggacacttagctaggaaccacttccaacccaa 9644392  T
Q  204 gaatttagctctatccacca 223  Q
    || ||| |||||||||||||    
T  9644391 gagtttcgctctatccacca 9644372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 226
Target Start/End: Complemental strand, 40799771 - 40799649
Alignment:
Q  104 caaaaccctaccaattcctgtaaaggacaagttgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaa 203  Q
    |||||||||||| || || | ||||||| || |||||||||||||||||| ||| |||||||||||||   || ||||| | |||| |||| ||||| ||    
T  40799771 caaaaccctaccgatgccagcaaaggacgagctgcacctcccactcatgaaaagagcaagaactagcaatgcacttagctaggaacaactttcaagccaa 40799672  T
Q  204 gaatttagctctatccaccacag 226  Q
    || |||  |||||||||||||||    
T  40799671 gagtttcactctatccaccacag 40799649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 226
Target Start/End: Original strand, 25410579 - 25410669
Alignment:
Q  136 tgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagaatttagctctatccaccacag 226  Q
    ||||||||||||||||   ||| ||| ||||||||| |  | ||||||| |||||||||||||||||||| |||  ||||||||| |||||    
T  25410579 tgcacctcccactcatagaaagagcaggaactagcaaggtacttagccaggaaccacttccaagctaagagtttcactctatccatcacag 25410669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 51871264 - 51871203
Alignment:
Q  163 gaactagcaggacatttagccatgaaccacttccaagctaagaatttagctctatccaccac 224  Q
    ||||||||||| || |||| || |||||||||||||||||||| ||||  ||||||||||||    
T  51871264 gaactagcagggcacttagtcaggaaccacttccaagctaagagtttaattctatccaccac 51871203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 136 - 226
Target Start/End: Original strand, 40188193 - 40188283
Alignment:
Q  136 tgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagaatttagctctatccaccacag 226  Q
    ||||||||| |||||||||||||||||||||||||||| || |||| || ||||||||||||||||| || ||| ||| ||||||||||||    
T  40188193 tgcacctcctactcatgataagtgcaagaactagcagggcacttaggcaagaaccacttccaagctatgagttttgctttatccaccacag 40188283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 164 - 294
Target Start/End: Original strand, 46028474 - 46028604
Alignment:
Q  164 aactagcaggacatttagccatgaaccacttccaagctaagaatttagctctatccaccacagtctgcccactatgggtgccacccgcaaacataaagtc 263  Q
    ||||||||||||| ||||||| |||||||||||||||||||| ||| |||||||||||||||| |  | |||||||||  ||| | | ||| | || |||    
T  46028474 aactagcaggacacttagccaggaaccacttccaagctaagagtttcgctctatccaccacagacccctcactatgggcaccatcagaaaaaacaaggtc 46028573  T
Q  264 attcttgtaagtccagatggtccaaataaca 294  Q
    ||||  | |||| ||||||||||||||||||    
T  46028574 attccgggaagttcagatggtccaaataaca 46028604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 226
Target Start/End: Original strand, 23176908 - 23176998
Alignment:
Q  136 tgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagaatttagctctatccaccacag 226  Q
    ||||||||| |||||||||||||||| ||||||||| |||| || || | ||||| |||||||||||||| |||  |||||| ||||||||    
T  23176908 tgcacctccaactcatgataagtgcatgaactagcatgacacttggcaaggaaccgcttccaagctaagagtttcactctatacaccacag 23176998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 223
Target Start/End: Complemental strand, 12258463 - 12258376
Alignment:
Q  136 tgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagaatttagctctatccacca 223  Q
    ||||||||||||||||    || ||| | ||| |||||||| ||||||| ||||||||| |||||||||| |||| ||||||||||||    
T  12258463 tgcacctcccactcatagagagagcagggactggcaggacacttagccaggaaccactttcaagctaagagtttaactctatccacca 12258376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 139 - 248
Target Start/End: Original strand, 26982040 - 26982149
Alignment:
Q  139 acctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagaatttagctctatccaccacagtctgcccactat 238  Q
    ||||||||||||||||| ||||| ||||| ||||| || ||||||| |||||||||||||||||||| |||  ||||||||||||||| || | ||| |     
T  26982040 acctcccactcatgataggtgcaggaacttgcagggcacttagccaagaaccacttccaagctaagagttttactctatccaccacaggctcctcacgaa 26982139  T
Q  239 gggtgccacc 248  Q
    ||||||||||    
T  26982140 gggtgccacc 26982149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 136 - 226
Target Start/End: Complemental strand, 34213236 - 34213146
Alignment:
Q  136 tgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagaatttagctctatccaccacag 226  Q
    |||||||| ||||| ||||||||||| ||||||||| | || |||||||||||||||||||||||||||| |||  |||||||||| ||||    
T  34213236 tgcacctcacactcgtgataagtgcatgaactagcatggcacttagccatgaaccacttccaagctaagagtttcactctatccacaacag 34213146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 1045402 - 1045466
Alignment:
Q  160 caagaactagcaggacatttagccatgaaccacttccaagctaagaatttagctctatccaccac 224  Q
    |||||||||||||| || ||||||| |||||||||||||||| ||| |||| | |||||||||||    
T  1045402 caagaactagcagggcacttagccaggaaccacttccaagctgagagtttaaccctatccaccac 1045466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 2833336 - 2833394
Alignment:
Q  166 ctagcaggacatttagccatgaaccacttccaagctaagaatttagctctatccaccac 224  Q
    |||||||| || |||||||||||||||||||||||||||| |||  ||||||| |||||    
T  2833336 ctagcagggcacttagccatgaaccacttccaagctaagagtttcactctatctaccac 2833394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 1762040 - 1762080
Alignment:
Q  178 ttagccatgaaccacttccaagctaagaatttagctctatc 218  Q
    |||||||||||||||||||||||||||| ||| ||||||||    
T  1762040 ttagccatgaaccacttccaagctaagagtttcgctctatc 1762080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 226
Target Start/End: Complemental strand, 4778120 - 4778030
Alignment:
Q  136 tgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagaatttagctctatccaccacag 226  Q
    ||||||||||||||||    || ||| | ||||||||| ||  |||||  ||||||||||||| |||||| |||| |||||||||||||||    
T  4778120 tgcacctcccactcatagagagagcagggactagcagggcacctagcctggaaccacttccaaactaagagtttaactctatccaccacag 4778030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 224
Target Start/End: Complemental strand, 41640912 - 41640824
Alignment:
Q  136 tgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagaatttagctctatccaccac 224  Q
    ||||||||||||||||    || ||| ||||||||||| || ||||||   ||||||||||||| ||||| |||| |||| ||||||||    
T  41640912 tgcacctcccactcatagggagagcaggaactagcagggcacttagcccgaaaccacttccaagttaagagtttaactctgtccaccac 41640824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 136 - 224
Target Start/End: Complemental strand, 24604925 - 24604837
Alignment:
Q  136 tgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagaatttagctctatccaccac 224  Q
    |||||||||||||||||||||| | || |||||||||| || ||||||| ||||||||| ||| |||||| ||| ||||||||||||||    
T  24604925 tgcacctcccactcatgataagagaaaaaactagcaggccacttagccaagaaccactttcaatctaagagtttcgctctatccaccac 24604837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 134 - 226
Target Start/End: Original strand, 34152023 - 34152115
Alignment:
Q  134 gttgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagaatttagctctatccaccacag 226  Q
    |||||||||||||||||||| ||||||| |||||   ||| |  ||||||| |||||||||||||||||||| ||||||||||||||| ||||    
T  34152023 gttgcacctcccactcatgaaaagtgcaggaactgctagggcgcttagccaggaaccacttccaagctaagagtttagctctatccacaacag 34152115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 42032832 - 42032731
Alignment:
Q  125 aaaggacaagttgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagaatttagctctatccaccac 224  Q
    |||||||  |||||||||||||||||| | | | ||| ||| ||||||| || ||||||| |||||||||||||||||||| ||| ||||||| ||||||    
T  42032832 aaaggacgggttgcacctcccactcataaaaggagcaggaagtagcagggcacttagccaggaaccacttccaagctaagagtttcgctctattcaccac 42032733  T
Q  225 ag 226  Q
    ||    
T  42032732 ag 42032731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 226
Target Start/End: Original strand, 7656805 - 7656897
Alignment:
Q  134 gttgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagaatttagctctatccaccacag 226  Q
    |||||||||| |||| |||||||||||||||| ||| |||||| ||||  | |||||||||||||  ||||| |||  |||||||||||||||    
T  7656805 gttgcacctctcactaatgataagtgcaagaattagtaggacacttagttaggaaccacttccaaattaagagtttcactctatccaccacag 7656897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 223
Target Start/End: Original strand, 42241233 - 42241322
Alignment:
Q  134 gttgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagaatttagctctatccacca 223  Q
    ||||||||||||||||| | |||||||| ||||||| ||  |  || |||| |||||||||||||||||||| ||| ||| |||||||||    
T  42241233 gttgcacctcccactcaaggtaagtgcaggaactagtagagcgcttcgccaggaaccacttccaagctaagagtttcgctttatccacca 42241322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 41927066 - 41927018
Alignment:
Q  178 ttagccatgaaccacttccaagctaagaatttagctctatccaccacag 226  Q
    ||||||| ||||||||||||||||||||  || ||||||||||||||||    
T  41927066 ttagccaggaaccacttccaagctaagagattcgctctatccaccacag 41927018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 205
Target Start/End: Original strand, 32073896 - 32074007
Alignment:
Q  94 gccaccaccacaaaaccctaccaattcctgtaaaggacaagttgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccact 193  Q
    |||||||||||||| |||||||  |||| ||| |||||  | ||| |||||||||||| | | | ||| ||||||| |||||| |||||||  || ||||    
T  32073896 gccaccaccacaaagccctaccggttccagtacaggacgggctgcgcctcccactcataaaaggagcaggaactagtaggacacttagccagaaatcact 32073995  T
Q  194 tccaagctaaga 205  Q
    ||||| ||||||    
T  32073996 tccaaactaaga 32074007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 36650463 - 36650524
Alignment:
Q  163 gaactagcaggacatttagccatgaaccacttccaagctaagaatttagctctatccaccac 224  Q
    ||||||||| |||| ||||||  |||||||| ||||||||||| |||| |||| ||||||||    
T  36650463 gaactagcaagacacttagcccggaaccactcccaagctaagagtttaactctgtccaccac 36650524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 134 - 225
Target Start/End: Original strand, 18430 - 18521
Alignment:
Q  134 gttgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagaatttagctctatccaccaca 225  Q
    |||||||||||||||||||||||||||| ||||||||||| || ||||||  ||| ||||| ||| ||| || ||| |||||||||||||||    
T  18430 gttgcacctcccactcatgataagtgcaggaactagcagggcacttagcccagaatcactttcaaactatgagtttcgctctatccaccaca 18521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 83243 - 83311
Alignment:
Q  155 aagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagaatttagctctatccacca 223  Q
    |||||||||||||||||||||| || | ||||||||||||||||||||||| |||  || |||||||||    
T  83243 aagtgcaagaactagcaggacacttcggcatgaaccacttccaagctaagagtttgactttatccacca 83311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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