View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10261_high_12 (Length: 339)
Name: NF10261_high_12
Description: NF10261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261_high_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 39 - 326
Target Start/End: Original strand, 701272 - 701559
Alignment:
| Q |
39 |
tgtgttaagaaataaagtaagattgtggtaagatgattaaactgtgaaatatgtttccatgactatgactaagttaaactttcttatactatccagtgtg |
138 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||| | ||||||||||||||| ||| |||||||||| | | ||||||||| |||||||||||||||| |
|
|
| T |
701272 |
tgtgttaagaaataaagtgatgttgtggtaagatggtgaaactgtgaaatatgattcgatgactatgagtgtgataaactttcatatactatccagtgtg |
701371 |
T |
|
| Q |
139 |
cagattaaactacttttttgcatgtaaatataaacactatatagtataacttttgcttttacttatgtgccggtattgttcatcgttcttctagcctctg |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
701372 |
cagattaaactacttttttgcatgtaaatataaacactatatagtataacttttgcttttacttatgtgccggtattattcatcgttcttctagcctccg |
701471 |
T |
|
| Q |
239 |
ttactttaattttcattactagaattttttatttctcatttccaggtcaagctattgtgtacagtgaacccgagaggcttgtgatgtc |
326 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
701472 |
ttactttaattttcattactagaattatttatttctcatttccaggtcaagctattgtgtacagtgaacccgagaggccggtgatgtc |
701559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University