View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261_high_24 (Length: 231)
Name: NF10261_high_24
Description: NF10261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261_high_24 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 14622237 - 14622013
Alignment:
| Q |
1 |
cccaagatccaagctgctgctacgacgtaatacgcacaaggaatgttgaaactcttggctatcgacggtaaccaatccgatactacatcacagaaaaccc |
100 |
Q |
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|||||| |||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
14622237 |
cccaagttccaagctgcggctacgctgtaatacgcacaaggaatgttgaaactcttggttatcgacggtaaccaatccgatactacatcacagaaaaccc |
14622138 |
T |
|
| Q |
101 |
aatcaggcttcgaagttttgagtatctcggtaacacggtcttggaaaccatcataagctaacttaaggtaaccagttaggtttaacggaacattttgagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14622137 |
aatcaggcttcgaagttttgagtatctcggtaacacggtcttggaaaccatcataagctaacttaaggtaaccagttaggtttaacggaacattttgagt |
14622038 |
T |
|
| Q |
201 |
gctttctgcaccttgtagttcttct |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
14622037 |
gctttctgcaccttgtagttcttct |
14622013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 27 - 225
Target Start/End: Complemental strand, 14588553 - 14588355
Alignment:
| Q |
27 |
gtaatacgcacaaggaatgttgaaactcttggctatcgacggtaaccaatccgatactacatcacagaaaacccaatcaggcttcgaagttttgagtatc |
126 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
14588553 |
gtaatacgcacaaggaatgttgaaactcttggctatcgatggtaaccaatccgatactaaatcacagaaaacccaatcaggcttcgaagttttgaatatc |
14588454 |
T |
|
| Q |
127 |
tcggtaacacggtcttggaaaccatcataagctaacttaaggtaaccagttaggtttaacggaacattttgagtgctttctgcaccttgtagttcttct |
225 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14588453 |
tcagtaacacggtcttggaaaccatcataagctaacttaaggtaaccagttaggtttaacggaacattttgagtgctttctgcaccttgtagttcttct |
14588355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 168
Target Start/End: Complemental strand, 12846083 - 12845949
Alignment:
| Q |
34 |
gcacaaggaatgttgaaactcttggctatcgacggtaaccaatccgatactacatcacagaaaacccaatcaggcttcgaagttttgagtatctcggtaa |
133 |
Q |
| |
|
|||||||| ||||| ||||| |||||||| ||||||||||| || | | | |||| |||||||||| ||||| || || |||||||||||||| |||| |
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| T |
12846083 |
gcacaagggatgttcaaacttttggctattgacggtaaccattcggtagcaaaatcatagaaaacccagtcagggtttgatgttttgagtatctcagtaa |
12845984 |
T |
|
| Q |
134 |
cacggtcttggaaaccatcataagctaacttaagg |
168 |
Q |
| |
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|| ||||||| |||||||||||| ||||||||| |
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| T |
12845983 |
catcatcttggagaccatcataagccaacttaagg |
12845949 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 34 - 225
Target Start/End: Complemental strand, 11530088 - 11529897
Alignment:
| Q |
34 |
gcacaaggaatgttgaaactcttggctatcgacggtaaccaatccgatactacatcacagaaaacccaatcaggcttcgaagttttgagtatctcggtaa |
133 |
Q |
| |
|
||||||||||| || | || ||||||||||||||||||||||| | ||| |||| ||||||||||||||| ||| || |||||||||||||| |||| |
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| T |
11530088 |
gcacaaggaatattcaggcttttggctatcgacggtaaccaatcagctacacaatcatagaaaacccaatcagactttgatgttttgagtatctcagtaa |
11529989 |
T |
|
| Q |
134 |
cacggtcttggaaaccatcataagctaacttaaggtaaccagttaggtttaacggaacattttgagtgctttctgcaccttgtagttcttct |
225 |
Q |
| |
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|| | |||||| ||| |||||||| ||||||||||||||||| |||||| ||||||||||||||||| |||||||||| ||||| |||| |
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| T |
11529988 |
catcgacttggagaccgtcataagccaacttaaggtaaccagtcttgtttaatggaacattttgagtgctctctgcaccttctagttgttct |
11529897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 34 - 225
Target Start/End: Complemental strand, 29954123 - 29953932
Alignment:
| Q |
34 |
gcacaaggaatgttgaaactcttggctatcgacggtaaccaatccgatactacatcacagaaaacccaatcaggcttcgaagttttgagtatctcggtaa |
133 |
Q |
| |
|
|||||||||||||||| || || ||||| |||||||||||||| | | | |||| | ||||||||||||||||| ||||||||||||||||| |||| |
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| T |
29954123 |
gcacaaggaatgttgaggcttttcgctattgacggtaaccaatcagctgcataatcatataaaacccaatcaggctttgaagttttgagtatctcagtaa |
29954024 |
T |
|
| Q |
134 |
cacggtcttggaaaccatcataagctaacttaaggtaaccagttaggtttaacggaacattttgagtgctttctgcaccttgtagttcttct |
225 |
Q |
| |
|
|| |||||||| ||| |||||||| || ||||| |||||| | ||| || ||||||||||||||||| ||| |||||||||||| |||| |
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| T |
29954023 |
catcgtcttggagaccgtcataagccaatttaagataaccaagcatgttaaatggaacattttgagtgctctctccaccttgtagttgttct |
29953932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 87 - 174
Target Start/End: Original strand, 51370383 - 51370470
Alignment:
| Q |
87 |
atcacagaaaacccaatcaggcttcgaagttttgagtatctcggtaacacggtcttggaaaccatcataagctaacttaaggtaacca |
174 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||| || |||||| |||||| | ||| |||||||| |||||||| |||||| |
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|
| T |
51370383 |
atcatagaaaacccaatcaggctttgaagttttgagtatatcagtaacattgtcttgtagaccgtcataagccaacttaagataacca |
51370470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 87 - 174
Target Start/End: Complemental strand, 20492205 - 20492118
Alignment:
| Q |
87 |
atcacagaaaacccaatcaggcttcgaagttttgagtatctcggtaacacggtcttggaaaccatcataagctaacttaaggtaacca |
174 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||| ||||| || |||||| ||||||| |||||||||||||| || ||||||| |||| |
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|
| T |
20492205 |
atcatagaaaacccaatcaggctttgaagttttaagtatttcagtaacatggtcttgaaaaccatcataagccaatttaaggtgacca |
20492118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 1357291 - 1357250
Alignment:
| Q |
87 |
atcacagaaaacccaatcaggcttcgaagttttgagtatctc |
128 |
Q |
| |
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|||| |||||||||||||||| || ||||||||||||||||| |
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|
| T |
1357291 |
atcatagaaaacccaatcaggatttgaagttttgagtatctc |
1357250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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