View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261_high_25 (Length: 227)
Name: NF10261_high_25
Description: NF10261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261_high_25 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 117; Significance: 9e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 17472042 - 17471818
Alignment:
| Q |
1 |
aattatcaacaaatctctattaaatagtgcttaaaagcatgtttgaactttctgtaaagaaatactaatgcaagtacgatcaacacacatctatgaaaca |
100 |
Q |
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| T |
17472042 |
aattataaacaaatctctattaaatagtgcttaaaagcatgattgaagtttctttacacaaatactaatgcaagaacgatcatcacatatctatg-aaca |
17471944 |
T |
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| Q |
101 |
tttacataaacatggatatcagaccaatactaacacatcgacaccgtcaataatctnnnnnnntaaaatatttgaatccacttaccatgtaacacttgag |
200 |
Q |
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| T |
17471943 |
tttacacaaacatgaacatcaaaccaatactaacacgtcgacaccgtcaataatctaagaaaataaaatatttgaatccacttaccttattacacttgag |
17471844 |
T |
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| Q |
201 |
actactattttcatctaattgatttt |
226 |
Q |
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|||| ||||||| |||||||||||| |
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| T |
17471843 |
actatgattttcaactaattgatttt |
17471818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 17581172 - 17581396
Alignment:
| Q |
1 |
aattatcaacaaatctctattaaatagtgcttaaaagcatgtttgaactttctgtaaagaaatactaatgcaagtacgatcaacacacatctatgaaaca |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| ||||| ||||| || | ||||||||||||||| ||||||| |||| ||||||| |||| |
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| T |
17581172 |
aattataaacaaatctctattaaatagtgcttaaaagcatgattgaagtttctttacacaaatactaatgcaagaacgatcatcacatatctatg-aaca |
17581270 |
T |
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| Q |
101 |
tttacataaacatggatatcagaccaatactaacacatcgacaccgtcaataatctnnnnnnntaaaatatttgaatccacttaccatgtaacacttgag |
200 |
Q |
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| T |
17581271 |
tttacacaaacatgaacatcaaaccaatactaacacgtcgacaccgtcaataatctaagaaaataaaatatttgaatccacttaccttattacacttgag |
17581370 |
T |
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| Q |
201 |
actactattttcatctaattgatttt |
226 |
Q |
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| T |
17581371 |
actatgattttcaactaattgatttt |
17581396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 46 - 227
Target Start/End: Complemental strand, 43381417 - 43381237
Alignment:
| Q |
46 |
aactttctgtaaagaaatactaatgcaagtacgatcaacacacatctatgaaacatttacataaacatggatatcagaccaatactaacacatcgacacc |
145 |
Q |
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||||||||||| | ||| ||||||||||| ||||||| | |||||||||| ||||||| ||| | || | ||| |||||||||||||| | ||||| |
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| T |
43381417 |
aactttctgtacacaaacactaatgcaagaacgatcagatcgcatctatgaat-atttacacaaatacgggtttcaaaccaatactaacacgttgacact |
43381319 |
T |
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| Q |
146 |
gtcaataatctnnnnnnntaaaatatttgaatccacttaccatgtaacacttgagactactattttcatctaattgattttt |
227 |
Q |
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| T |
43381318 |
gtcaataatctaagaaaataaaatatttgaatccacttaccttgttacacttgagactatgattttcatctaattgattttt |
43381237 |
T |
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