View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10261_high_4 (Length: 414)
Name: NF10261_high_4
Description: NF10261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 120 - 360
Target Start/End: Complemental strand, 9939018 - 9938778
Alignment:
| Q |
120 |
ctaacaaagtaaggcttactccgtgttcggttataggcccatatgatgttgtattgctctgcaacggttagtacatacttttactcgcatgggcgttgga |
219 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9939018 |
ctaataaagtaaggcttactccgtgttcggttataggcccatatgatgttgtattgttttgcaacggttagtacatacttttactcgcatgggcgttgga |
9938919 |
T |
|
| Q |
220 |
gaaccttaaacatagttctacaagaaaaattctcaatctctcgatgaacgactcgagtaatatctctttccatgcccggggcgcatggcaccatgtgtgg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||| |
|
|
| T |
9938918 |
gaaccttaaacatagttctacaagaaaaattctcaatctctcgatgaacgactcgagtaatatctctttccatgcccgggacgcgtggcaccatgcgtgg |
9938819 |
T |
|
| Q |
320 |
ggtccaagaccataaaatagaaaaatggcgttcttttacct |
360 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9938818 |
ggtccaagaccataaaatagaaaaatggtgttcttttacct |
9938778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 9939601 - 9939496
Alignment:
| Q |
19 |
agatttgacggtgataggaatttt-cgaatctcatatatgtctttgttggattatcgtatgttcctagatcaaatactatctaaggtttatattcaagat |
117 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9939601 |
agatttgacggtgataggaatttttcgaatctcatctatgtctttgttgtattatcatatgttcctagatcaaacactatctaaggtttatattcaagat |
9939502 |
T |
|
| Q |
118 |
gtctaa |
123 |
Q |
| |
|
|||||| |
|
|
| T |
9939501 |
gtctaa |
9939496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 41 - 131
Target Start/End: Complemental strand, 24480887 - 24480797
Alignment:
| Q |
41 |
ttcgaatctcatatatgtctttgttggattatcgtatgttcctagatcaaat-actatctaaggtttatattcaagatgtctaacaaagtaa |
131 |
Q |
| |
|
|||||||||| | |||||||||||||||||| | ||| ||||||||||||| |||||| ||| ||||||| || ||||||||||||||||| |
|
|
| T |
24480887 |
ttcgaatctctt-tatgtctttgttggattagcacatgatcctagatcaaattactatcaaagatttatatccatgatgtctaacaaagtaa |
24480797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 9497507 - 9497363
Alignment:
| Q |
18 |
gagatttgacggtgataggaa-ttttcgaatctcatatatgtctttgttggattatcgtatgttcctagatcaaatactatctaaggtttatattcaaga |
116 |
Q |
| |
|
|||||||| ||||||| ||| |||| ||||| | | |||||||||||||||||| | ||||||||||||||||||||| ||||| |||||||||| || |
|
|
| T |
9497507 |
gagatttgtcggtgattagaactttttgaatcccctctatgtctttgttggattaacacatgttcctagatcaaatactacctaagatttatattcacga |
9497408 |
T |
|
| Q |
117 |
tgtctaacaaagtaaggcttactccgtgttcggttataggcccat |
161 |
Q |
| |
|
||||||||||||||||| ||| |||| ||||||| ||| ||||| |
|
|
| T |
9497407 |
cgtctaacaaagtaaggcctaccccgtcttcggttttagtcccat |
9497363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 218 - 273
Target Start/End: Complemental strand, 9497347 - 9497292
Alignment:
| Q |
218 |
gagaaccttaaacatagttctacaagaaaaattctcaatctctcgatgaacgactc |
273 |
Q |
| |
|
|||||| |||||| |||| |||||||| |||||||||||||||| |||||||||| |
|
|
| T |
9497347 |
gagaacattaaacctagtcatacaagaagaattctcaatctctcggtgaacgactc |
9497292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 132
Target Start/End: Original strand, 6121123 - 6121185
Alignment:
| Q |
70 |
tatcgtatgttcctagatcaaatactatctaaggtttatattcaagatgtctaacaaagtaag |
132 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||| ||||||| ||| || ||||||||||||| |
|
|
| T |
6121123 |
tatcttatgttcctagatcaaatactatttaatgtttatactcacgagacctaacaaagtaag |
6121185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 43626498 - 43626414
Alignment:
| Q |
54 |
tatgtctttgttggattatcgtatgttcctagatcaaatactatctaaggtttatattcaagatgtctaacaaagtaaggcttact |
139 |
Q |
| |
|
|||||||||||||||||| | ||||||||||| |||||| ||| |||| |||||| | | || |||||| |||||||||| |||| |
|
|
| T |
43626498 |
tatgtctttgttggattagtgcatgttcctaga-caaatattatttaagatttatacttacgacgtctaataaagtaaggcctact |
43626414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University