View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261_high_5 (Length: 407)
Name: NF10261_high_5
Description: NF10261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 41357519 - 41357123
Alignment:
| Q |
1 |
aatgaatatgaaaggttagctcatgagctaaatcgccaatcccttcaaacaataataggttgtgaaaatatctaaagatctctatagcatagcatgatgc |
100 |
Q |
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| T |
41357519 |
aatgaatatgaaaggttagctcatgagctaaatcgccaatcccttcaaacaataataggttgtgaaaatatctaaagatctctatagcatagcatgatgc |
41357420 |
T |
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| Q |
101 |
ttcatatgtcattcat--------catacgatgttaaataagcacatagctagaatgtaaacaattgaacaacgcaaactaacctctagaaatgtcaatg |
192 |
Q |
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| T |
41357419 |
ttcatatgtcattcattcattcatcatatgatgttaaataagcacatagctagaatgtaaacaattgaacaacgcaaactaacctctagaaatgtcaatg |
41357320 |
T |
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| Q |
193 |
tggaacgaagagaattcacaaaaaacttagcctcggatagatccatgatcctgcgctcctgtaatcagataaacaagaatctccattagtttgaattaat |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41357319 |
tggaacgaagagaattcacaaaaaacttagcctcggatagatccatgatcctgcgctcctgtaatcagataaacaagaatctccattagtttgaattaat |
41357220 |
T |
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| Q |
293 |
attttcaatcacagatcacgaaaactagcagtaaattcaaactccactatgctataatgctataactccgctataccgctatttgacgccactttgt |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41357219 |
attttcaatcacagatcacgaaaactagcagtaaattcaaactccactatgctataatgctataactccgctataccgctatttgacgccactttgt |
41357123 |
T |
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