View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261_high_6 (Length: 401)
Name: NF10261_high_6
Description: NF10261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 15559676 - 15560045
Alignment:
| Q |
1 |
aatcacaaatgctagctgctcgttaggacaggtgccaggctttgcctccattcatattgaatttcttgtgcctcccaaagaacataaccaatataaggat |
100 |
Q |
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|||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
15559676 |
aatcacaaatgctatctgctccttaggacaggtgccaggctttgcctcctttcatattgaatctcttgagcctcccaaagaacataaccaatataaggat |
15559775 |
T |
|
| Q |
101 |
acacttcccctctgtactccactttcccgaaaatccaatccatgaatctttgcaaccactttctcatagacactaagatccattccatggaacaaaacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15559776 |
acacttcccctctgtactccactttcccgaaaatccaatccatgaatctttgcaaccactttctcatagacactaagatccattccatggaacaaaacaa |
15559875 |
T |
|
| Q |
201 |
tacaaattgcatcgcattgaaaccaacagtgacgtgcagatagcaaatggtcatgcccattacctttgaattcttcattaggtaagagaattcctctctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
15559876 |
tacaaattgcatcgcattgaaaccaacagtgacgtgcagata------------gcccatttcctttgaattcttcagtaggtaagagaattcctctctt |
15559963 |
T |
|
| Q |
301 |
ttatataacaatacaagttgaagcatggaagtaaaaactt---cacctacaaacataagaaaggtaagaaaaatgagttgggaatt |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
15559964 |
ttatataacaatacaagttgaagcatggaagtaaaaacttcaccacctacaaacat----aaggtaagaaaaatgagttgggaatt |
15560045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 15560259 - 15560106
Alignment:
| Q |
1 |
aatcacaaatgctagctgctcgttaggacaggtgccaggctttgcctccattcatattgaatttcttgtgcctcccaaagaacataaccaatataaggat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||| |||||||||||||||||||||||||| |
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| T |
15560259 |
aatcacaaatgctagctgctcgttaggacaggtgccaggctttgcctcctttcatattgaatctcttgagcctaccaaagaacataaccaatataaggat |
15560160 |
T |
|
| Q |
101 |
acacttcccctctgtactccactttcccgaaaatccaatccatgaatctttgca |
154 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15560159 |
acacttcccctctgtactccactttcccgaaaatccaatccatgaatctttgca |
15560106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 185
Target Start/End: Complemental strand, 15562028 - 15561993
Alignment:
| Q |
150 |
ttgcaaccactttctcatagacactaagatccattc |
185 |
Q |
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| T |
15562028 |
ttgcaaccactttctcatagacactaagatccattc |
15561993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 300
Target Start/End: Original strand, 15561953 - 15561985
Alignment:
| Q |
268 |
gaattcttcattaggtaagagaattcctctctt |
300 |
Q |
| |
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|||||||||| |||||||||||||||||||||| |
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| T |
15561953 |
gaattcttcagtaggtaagagaattcctctctt |
15561985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 5e-32; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 24 - 154
Target Start/End: Original strand, 34988865 - 34988995
Alignment:
| Q |
24 |
taggacaggtgccaggctttgcctccattcatattgaatttcttgtgcctcccaaagaacataaccaatataaggatacacttcccctctgtactccact |
123 |
Q |
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||||||| || ||| |||||||| ||||||||||||||||||||| || ||||||||||||| ||||| ||||||||| ||||||| | || ||||||| |
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| T |
34988865 |
taggacaagttccatgctttgccaccattcatattgaatttcttgagcatcccaaagaacattaccaaaataaggataaacttcccttttgcactccacc |
34988964 |
T |
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| Q |
124 |
ttcccgaaaatccaatccatgaatctttgca |
154 |
Q |
| |
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| || |||||||||||||||||||||||||| |
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|
| T |
34988965 |
taccagaaaatccaatccatgaatctttgca |
34988995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 24 - 154
Target Start/End: Original strand, 35042427 - 35042557
Alignment:
| Q |
24 |
taggacaggtgccaggctttgcctccattcatattgaatttcttgtgcctcccaaagaacataaccaatataaggatacacttcccctctgtactccact |
123 |
Q |
| |
|
|||||||||||||| || ||||| ||||||||||||||||||||| | |||||||||||||| ||||| ||||| ||| |||||| ||||||||||| |
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| T |
35042427 |
taggacaggtgccatgccttgccaccattcatattgaatttcttgagtctcccaaagaacattaccaagataagaataagcttcccttctgtactccatc |
35042526 |
T |
|
| Q |
124 |
ttcccgaaaatccaatccatgaatctttgca |
154 |
Q |
| |
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| || ||||||||||||||||||||| |||| |
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| T |
35042527 |
tacctgaaaatccaatccatgaatctctgca |
35042557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 315 - 383
Target Start/End: Original strand, 35000925 - 35000996
Alignment:
| Q |
315 |
aagttgaagcatggaagtaaaaacttcacc---tacaaacataagaaaggtaagaaaaatgagttgggaatt |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||| ||||| |
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| T |
35000925 |
aagttgaagcatggaagtaaaaacttcaccacctactaacataagaaaggtaagaagaatgagttgtgaatt |
35000996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 35000268 - 35000315
Alignment:
| Q |
179 |
tccattccatggaacaaaacaatacaaattgcatcgcattgaaaccaa |
226 |
Q |
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|
||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
35000268 |
tccattccatggaacaaaacaatacaaattgtatcacattgaaaccaa |
35000315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 315 - 383
Target Start/End: Original strand, 35047290 - 35047361
Alignment:
| Q |
315 |
aagttgaagcatggaagtaaaaactt---cacctacaaacataagaaaggtaagaaaaatgagttgggaatt |
383 |
Q |
| |
|
|||||||||||||||||||||||||| |||| || ||||||||||| ||||||| ||| ||||||||||| |
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| T |
35047290 |
aagttgaagcatggaagtaaaaacttcaccaccaactaacataagaaaagtaagaagaataagttgggaatt |
35047361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 35000354 - 35000417
Alignment:
| Q |
242 |
agcaaatggtcatg-cccattacctttgaattcttcattaggtaagagaattcctctcttttat |
304 |
Q |
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||||||||||||| |||||| ||||||||||||||| | ||||||||||||||||||||||| |
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| T |
35000354 |
agcaaatggtcataacccatttcctttgaattcttcaacaagtaagagaattcctctcttttat |
35000417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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