View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10261_low_1 (Length: 1017)

Name: NF10261_low_1
Description: NF10261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10261_low_1
NF10261_low_1
[»] chr8 (5 HSPs)
chr8 (10-631)||(16496051-16496691)
chr8 (721-999)||(16495682-16495960)
chr8 (469-531)||(5155309-5155372)
chr8 (557-631)||(14189599-14189673)
chr8 (828-886)||(5898799-5898857)
[»] chr7 (4 HSPs)
chr7 (545-624)||(10930859-10930938)
chr7 (543-598)||(24575877-24575932)
chr7 (547-606)||(31893781-31893840)
chr7 (183-248)||(46884238-46884303)
[»] chr5 (4 HSPs)
chr5 (469-533)||(9827701-9827765)
chr5 (450-537)||(24208444-24208531)
chr5 (545-630)||(24211539-24211624)
chr5 (450-528)||(15233882-15233960)
[»] scaffold0110 (1 HSPs)
scaffold0110 (317-427)||(25924-26033)
[»] chr3 (9 HSPs)
chr3 (545-631)||(7255007-7255093)
chr3 (414-528)||(1697524-1697640)
chr3 (414-463)||(24736194-24736243)
chr3 (355-432)||(30259810-30259886)
chr3 (418-490)||(33400699-33400771)
chr3 (556-631)||(1885161-1885236)
chr3 (386-425)||(7313197-7313236)
chr3 (319-425)||(53007332-53007437)
chr3 (497-530)||(51811612-51811645)
[»] chr2 (3 HSPs)
chr2 (355-425)||(4865634-4865703)
chr2 (559-631)||(14913450-14913522)
chr2 (483-528)||(37936665-37936710)
[»] chr4 (3 HSPs)
chr4 (412-456)||(4108154-4108198)
chr4 (558-604)||(6599572-6599618)
chr4 (383-432)||(26310342-26310391)
[»] chr1 (2 HSPs)
chr1 (557-631)||(15474610-15474684)
chr1 (390-431)||(42791397-42791438)


Alignment Details
Target: chr8 (Bit Score: 471; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 10 - 631
Target Start/End: Complemental strand, 16496691 - 16496051
Alignment:
Q  10 gaagcagagaagatgttcgaagcaaatcttgagatattattggattgtagggttattattcctttttgggccaaacttgaagtggaaaagtttgatgttt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16496691 gaagcagagaagatgttcgaagcaaatcttgagatattattggattgtagggttattattcctttttgggccaaacttgaagtggaaaagtttgatgttt 16496592  T
Q  110 gctctttagacgtcaaa-agtactatcacacacttaaaagtgacattcaataccctcaactgcattggtagttaactatcgttggagatatttaagtcat 208  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16496591 gctctttagacgtcaaagagtactatcacacacttaaaagtgacattcaataccctcaactgcattggtagttaactatcgttggagatatttaagtcat 16496492  T
Q  209 tttcaagtgagtgatagcaaatattttactgtaaataacactattaaaaaagttattggacctaactttattggggaaagttaaaagtctg-----nnnn 303  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||             
T  16496491 tttcaagtgagtgataacaaatattttactgtaaataacactattaaaaaagttattggacctaactttattggggaaagttaaaagcctgtttttattt 16496392  T
Q  304 nnnnnnnnnnnnnaagaaaattgcccttctcccataaaatattgcccatttccatacaaactggcaaaaata---------------ccccccagcatga 388  Q
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||||| ||||||    
T  16496391 ttatttttattttaagaaaattgcccttctcccataaaatattgcccatttccatacaaactggcaaaaatancccccccccccccccccccccgcatga 16496292  T
Q  389 cttaagtcacacatgtgttaaacctaacgtgacttaactcatgtaggttataatccaacgcgagttaagtcacgttgtggctgtgtccactaccagaaca 488  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16496291 cttaagtcacacatgtgttaaacctaacgtgacttaactcatgtagg--ataatccaacgcgagttaagtcacgttgtggctgtgtccactaccagaaca 16496194  T
Q  489 acagaaacacatttttccttaattttcttcattcattcatacatctattacaacgagtttacaacctacgtgagttaactcacgctaaaaatactgagtg 588  Q
    ||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  16496193 acagagacacatttttccctaatttccttcattcattcatacatctattacaacgagtttacaacctgcgtgagttaactcacgctgaaaatactgagtg 16496094  T
Q  589 tgacttaagtcacgcatgtgtaatttcgtccattcaattggga 631  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  16496093 tgacttaagtcacgcatgtgtaatttcgtccattcaattggga 16496051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 721 - 999
Target Start/End: Complemental strand, 16495960 - 16495682
Alignment:
Q  721 acaacttcagggaccaaacaaaactcaattttgttccctnnnnnnnnnctcaatttcgttgatcattttctcaacgtggtcaacactatcttatctcagc 820  Q
    |||||||||||||||||||||||||||||||||||||||         |||||||||||||| ||||||||||||||||||||| |||| ||||||||||    
T  16495960 acaacttcagggaccaaacaaaactcaattttgttccctaaagaaaaactcaatttcgttgaccattttctcaacgtggtcaacgctattttatctcagc 16495861  T
Q  821 gtagccatgtgcaaaaatatggttaactgaaccatatcactaaactaaactaaagtgaaccacaaactagttgaaccatattaaatggaattaaatggtt 920  Q
    | ||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  16495860 ggagccatgtgcaaaaatatgattaactgaaccatatcactaaactaaaccaaactgaaccacaaattagttgaaccatattaaatggaattaaatggtt 16495761  T
Q  921 cataaactaaaccagaaatttaaatcgaaccgccttgaaatcaccggaggtccgccgttcgcgtcgccggagctcaacc 999  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16495760 cataaactaaaccagaaatttaaatcgaaccgccttgaaatcaccggaggtccgccgttcgcgtcgccggagctcaacc 16495682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 469 - 531
Target Start/End: Complemental strand, 5155372 - 5155309
Alignment:
Q  469 ctgtgtccactaccagaacaacagaaacacattttt-ccttaattttcttcattcattcataca 531  Q
    ||||||||| ||||||||||||| |||||| ||||| || ||||||||||||||||||||||||    
T  5155372 ctgtgtccaataccagaacaacataaacactttttttccctaattttcttcattcattcataca 5155309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 557 - 631
Target Start/End: Complemental strand, 14189673 - 14189599
Alignment:
Q  557 cgtgagttaactcacgctaaaaatactgagtgtgacttaagtcacgcatgtgtaatttcgtccattcaattggga 631  Q
    |||||||||||||||||| ||| ||  ||   ||||||||||||||||||  |||||||||||||||| ||||||    
T  14189673 cgtgagttaactcacgctgaaagtatcgatcatgacttaagtcacgcatggataatttcgtccattcagttggga 14189599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 828 - 886
Target Start/End: Original strand, 5898799 - 5898857
Alignment:
Q  828 tgtgcaaaaatatggttaactgaaccatatcactaaactaaactaaagtgaaccacaaa 886  Q
    |||| |||||| ||||||  ||||||||||||||||||||||| ||| |||| ||||||    
T  5898799 tgtgaaaaaatgtggttacatgaaccatatcactaaactaaaccaaattgaatcacaaa 5898857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 3e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 545 - 624
Target Start/End: Complemental strand, 10930938 - 10930859
Alignment:
Q  545 gtttacaacctacgtgagttaactcacgctaaaaatactgagtgtgacttaagtcacgcatgtgtaatttcgtccattca 624  Q
    ||||||||||| |||||||||||||||||| ||| ||  ||| ||||||||||||||||||| |||||||||||||||||    
T  10930938 gtttacaaccttcgtgagttaactcacgctgaaagtatcgagcgtgacttaagtcacgcatgggtaatttcgtccattca 10930859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 543 - 598
Target Start/End: Complemental strand, 24575932 - 24575877
Alignment:
Q  543 gagtttacaacctacgtgagttaactcacgctaaaaatactgagtgtgacttaagt 598  Q
    ||||||| |||||||||||||||||||||||| ||| |||  ||||||||||||||    
T  24575932 gagtttataacctacgtgagttaactcacgctgaaagtacctagtgtgacttaagt 24575877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 547 - 606
Target Start/End: Complemental strand, 31893840 - 31893781
Alignment:
Q  547 ttacaacctacgtgagttaactcacgctaaaaatactgagtgtgacttaagtcacgcatg 606  Q
    ||||||||| |||| ||||||||||||| ||||||| ||| |||||||||||||| ||||    
T  31893840 ttacaacctgcgtgggttaactcacgctgaaaataccgagcgtgacttaagtcacacatg 31893781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 248
Target Start/End: Original strand, 46884238 - 46884303
Alignment:
Q  183 actatcgttggagatatttaagtcattttcaagtgagtgatagcaaatattttactgtaaataaca 248  Q
    ||||| ||||||| |||||   ||||||||||||| |||||| ||||||||||| |||||| ||||    
T  46884238 actattgttggaggtattttgatcattttcaagtgtgtgataacaaatattttagtgtaaacaaca 46884303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 4e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 469 - 533
Target Start/End: Complemental strand, 9827765 - 9827701
Alignment:
Q  469 ctgtgtccactaccagaacaacagaaacacatttttccttaattttcttcattcattcatacatc 533  Q
    |||||||||||| |||||||  |||||| || |||||||||||||||||||||||||||||||||    
T  9827765 ctgtgtccactaacagaacattagaaactcaattttccttaattttcttcattcattcatacatc 9827701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 450 - 537
Target Start/End: Original strand, 24208444 - 24208531
Alignment:
Q  450 gagttaagtcacgttgtggctgtgtccactaccagaacaacagaaacacatttttccttaattttcttcattcattcatacatctatt 537  Q
    |||| ||||||||||| | || |||||||||| ||||||| |||||||||||||||| |||||| || | |||||| |||||||||||    
T  24208444 gagtaaagtcacgttgggtctatgtccactactagaacaaaagaaacacatttttccctaatttcctccgttcattgatacatctatt 24208531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 545 - 630
Target Start/End: Original strand, 24211539 - 24211624
Alignment:
Q  545 gtttacaacctacgtgagttaactcacgctaaaaatactgagtgtgacttaagtcacgcatgtgtaatttcgtccattcaattggg 630  Q
    ||||||||||| || ||||||||||||||| ||| ||| ||| ||||||||||||||||    ||| |||||||||||||||||||    
T  24211539 gtttacaacctgcgggagttaactcacgctgaaagtaccgagcgtgacttaagtcacgcgaaggtactttcgtccattcaattggg 24211624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 450 - 528
Target Start/End: Original strand, 15233882 - 15233960
Alignment:
Q  450 gagttaagtcacgttgtggctgtgtccactaccagaacaacagaaacacatttttccttaattttcttcattcattcat 528  Q
    |||||| |||||| |||| ||||||| ||||| ||||||||| |||| || |||||| ||||||||||||||| |||||    
T  15233882 gagttatgtcacgatgtgtctgtgtcaactacgagaacaacataaactcaattttccctaattttcttcattccttcat 15233960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 317 - 427
Target Start/End: Complemental strand, 26033 - 25924
Alignment:
Q  317 aagaaaattgcccttctcccataaaatattgcccatttccatacaaactggcaaaaataccccccagcatgacttaagtcacacatgtgttaaacctaac 416  Q
    ||||||||||| |||||||||| ||   |||| ||| |||||| ||| |||| |||||||| || ||| ||||||||||||| ||||||||||||  |||    
T  26033 aagaaaattgctcttctcccatcaagatttgctcatctccatataaaatggctaaaatacctcc-agcgtgacttaagtcacgcatgtgttaaacgcaac 25935  T
Q  417 gtgacttaact 427  Q
    |||||||||||    
T  25934 gtgacttaact 25924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 545 - 631
Target Start/End: Original strand, 7255007 - 7255093
Alignment:
Q  545 gtttacaacctacgtgagttaactcacgctaaaaatactgagtgtgacttaagtcacgcatgtgtaatttcgtccattcaattggga 631  Q
    ||||| |||||||||||||||||||||||| ||| ||| ||||||||||||||||| ||| | ||| ||  ||||||||||| ||||    
T  7255007 gtttataacctacgtgagttaactcacgctgaaagtaccgagtgtgacttaagtcatgcaggggtacttatgtccattcaatgggga 7255093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 414 - 528
Target Start/End: Complemental strand, 1697640 - 1697524
Alignment:
Q  414 aacgtgacttaactcatgtaggttataatccaacgcgagttaagtcacgttgtggctgtgtccactaccagaacaacagaaacacat--ttttccttaat 511  Q
    |||||||||||| ||| ||||||| || |||| || ||||||||||| ||| || || |||| | |||||||||| || |||||| |  |||||||||||    
T  1697640 aacgtgacttaagtcacgtaggttgtagtccagcgtgagttaagtcatgttctgcctatgtcaagtaccagaacagcaaaaacaccttcttttccttaat 1697541  T
Q  512 tttcttcattcattcat 528  Q
    ||  ||||||| |||||    
T  1697540 ttctttcattccttcat 1697524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 414 - 463
Target Start/End: Original strand, 24736194 - 24736243
Alignment:
Q  414 aacgtgacttaactcatgtaggttataatccaacgcgagttaagtcacgt 463  Q
    |||||||||||||||| ||| ||||||||||| || ||||||||||||||    
T  24736194 aacgtgacttaactcacgtatgttataatccagcgtgagttaagtcacgt 24736243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 355 - 432
Target Start/End: Complemental strand, 30259886 - 30259810
Alignment:
Q  355 ccatacaaactggcaaaaataccccccagcatgacttaagtcacacatgtgttaaacctaacgtgacttaactcatgt 432  Q
    ||||||||||||   ||||||||| ||| ||||||||| ||||| || |||||||||| |||||||||||| ||||||    
T  30259886 ccatacaaactgatcaaaatacccacca-catgacttatgtcacgcaggtgttaaacccaacgtgacttaagtcatgt 30259810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 418 - 490
Target Start/End: Complemental strand, 33400771 - 33400699
Alignment:
Q  418 tgacttaactcatgtaggttataatccaacgcgagttaagtcacgttgtggctgtgtccactaccagaacaac 490  Q
    |||||||||||| | ||||||||||| | || ||||||||||||| || | || || ||||||||||||||||    
T  33400771 tgacttaactcaagcaggttataatctagcgtgagttaagtcacgctgggtctttgcccactaccagaacaac 33400699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 556 - 631
Target Start/End: Complemental strand, 1885236 - 1885161
Alignment:
Q  556 acgtgagttaactcacgctaaaaatactgagtgtgacttaagtcacgcatgtgtaatttcgtccattcaattggga 631  Q
    ||||||||||||||||||| ||||||   || || |||||||| ||||||| ||| ||||| ||||||| ||||||    
T  1885236 acgtgagttaactcacgctgaaaatatctagcgtaacttaagttacgcatgagtactttcgcccattcagttggga 1885161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 386 - 425
Target Start/End: Original strand, 7313197 - 7313236
Alignment:
Q  386 tgacttaagtcacacatgtgttaaacctaacgtgacttaa 425  Q
    ||||||||||||||||||| ||||||| ||||||||||||    
T  7313197 tgacttaagtcacacatgtattaaacccaacgtgacttaa 7313236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 319 - 425
Target Start/End: Original strand, 53007332 - 53007437
Alignment:
Q  319 gaaaattgcccttctcccataaaatattgcccatttccatacaaactggcaaaaataccccccagcatgacttaagtcacacatgtgttaaacctaacgt 418  Q
    ||||||||| ||||||||||  |||||||| |  | ||||||||| || | |||||||| |||| | ||||||||||||| || ||||||  || |||||    
T  53007332 gaaaattgctcttctcccatccaatattgctccctcccatacaaattgacgaaaataccaccca-cgtgacttaagtcacgcaggtgttatgcccaacgt 53007430  T
Q  419 gacttaa 425  Q
    |||||||    
T  53007431 gacttaa 53007437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 497 - 530
Target Start/End: Complemental strand, 51811645 - 51811612
Alignment:
Q  497 acatttttccttaattttcttcattcattcatac 530  Q
    |||||||||||||||||| |||||||||||||||    
T  51811645 acatttttccttaatttttttcattcattcatac 51811612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 355 - 425
Target Start/End: Complemental strand, 4865703 - 4865634
Alignment:
Q  355 ccatacaaactggcaaaaataccccccagcatgacttaagtcacacatgtgttaaacctaacgtgacttaa 425  Q
    |||||||||||| | |||||||| |||| |||||||||||| ||||| |||||||| | ||||||||||||    
T  4865703 ccatacaaactgaccaaaataccaccca-catgacttaagttacacaggtgttaaatccaacgtgacttaa 4865634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 559 - 631
Target Start/End: Original strand, 14913450 - 14913522
Alignment:
Q  559 tgagttaactcacgctaaaaatactgagtgtgacttaagtcacgcatgtgtaatttcgtccattcaattggga 631  Q
    |||||||||||||| | ||| |||  || ||||||||||||||||||| ||| ||||||||||| | ||||||    
T  14913450 tgagttaactcacgatgaaagtacctagcgtgacttaagtcacgcatgggtactttcgtccatttagttggga 14913522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 483 - 528
Target Start/End: Original strand, 37936665 - 37936710
Alignment:
Q  483 agaacaacagaaacacatttttccttaattttcttcattcattcat 528  Q
    |||||| ||||||| || |||||||||||||||||||||| |||||    
T  37936665 agaacaccagaaactcaattttccttaattttcttcattccttcat 37936710  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 412 - 456
Target Start/End: Complemental strand, 4108198 - 4108154
Alignment:
Q  412 ctaacgtgacttaactcatgtaggttataatccaacgcgagttaa 456  Q
    ||||||||| |||||||||||| |||||||| |||||||||||||    
T  4108198 ctaacgtgagttaactcatgtaagttataattcaacgcgagttaa 4108154  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 558 - 604
Target Start/End: Original strand, 6599572 - 6599618
Alignment:
Q  558 gtgagttaactcacgctaaaaatactgagtgtgacttaagtcacgca 604  Q
    ||||||||||||||||| ||| ||||||  |||||||||||||||||    
T  6599572 gtgagttaactcacgctgaaagtactgaacgtgacttaagtcacgca 6599618  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 383 - 432
Target Start/End: Complemental strand, 26310391 - 26310342
Alignment:
Q  383 gcatgacttaagtcacacatgtgttaaacctaacgtgacttaactcatgt 432  Q
    |||||| |||| ||||||| |||||||||| |||||||||||| ||||||    
T  26310391 gcatgagttaattcacacaggtgttaaacccaacgtgacttaagtcatgt 26310342  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 557 - 631
Target Start/End: Original strand, 15474610 - 15474684
Alignment:
Q  557 cgtgagttaactcacgctaaaaatactgagtgtgacttaagtcacgcatgtgtaatttcgtccattcaattggga 631  Q
    ||||||||||| |||||||||| |||   | |||| ||||||| |||||  ||| ||||||||||||||||||||    
T  15474610 cgtgagttaacccacgctaaaagtaccctgcgtgaattaagtcgcgcataggtactttcgtccattcaattggga 15474684  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 390 - 431
Target Start/End: Original strand, 42791397 - 42791438
Alignment:
Q  390 ttaagtcacacatgtgttaaacctaacgtgacttaactcatg 431  Q
    ||||||||| ||||||||||||  ||||||||||||||||||    
T  42791397 ttaagtcacgcatgtgttaaactcaacgtgacttaactcatg 42791438  T

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