View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10261_low_10 (Length: 410)
Name: NF10261_low_10
Description: NF10261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 51961327 - 51960933
Alignment:
| Q |
1 |
catgacaagataaatgttttgggatcgcgaccaatattgcatggttgttcaatgatgttatatcacacgtttgaatgttgtgactctatcactatagtac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
51961327 |
catgacaagataaatgttttgggatcgcgaccaatattgcatggttgttcaatgatgttatatcacatgtttgaatgttgtgactctatcactatagtac |
51961228 |
T |
|
| Q |
101 |
tatgctcgagttgtaaataacaaaatccaaatccttgagaaagtaataaatttacatcattacaaaaggatcgatgt----tgttctgtcaataagaaag |
196 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||| |
|
|
| T |
51961227 |
tatgctcgagttgtaaataagaaaatccaaatccttgagaaagtaataaatttacatcattacaaaaggatcgatgtacgttgctctatcaataagaaag |
51961128 |
T |
|
| Q |
197 |
actctgcttaaattaaaggtgtagctttccatcctctcctagatcacggaagcagattctactcttttgtctcaaagtctaaatctattagacacataat |
296 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51961127 |
actctggttaaattaaaggtgtagctttccatcctctcctagatcacggaagcagattctactcttttgtctcaaagtctaaatctattagacacataat |
51961028 |
T |
|
| Q |
297 |
ttcgtcatatacaccgaagaagattcttcactttgagcaaaaaccttcaacttcttgtttaagtgtcaatttctggtgacatgcaacagtgtagt |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51961027 |
ttcgtcatatacaccgaagaagattcttcactttgagcaaaaaccttcaacttcttgtttaagtgtcaatttctggtgacatgcaacagtgtagt |
51960933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University