View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10261_low_12 (Length: 407)
Name: NF10261_low_12
Description: NF10261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 17 - 393
Target Start/End: Complemental strand, 52609432 - 52609062
Alignment:
| Q |
17 |
cactagaatctttaagtcttcgcctcaaagaacaagacaatgacttgtgggctaaggtaaaatgaggtgcggaaatgcagtcgtggatctcttatatatg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
52609432 |
cactagaatctttaagtcttcgcctcaaagaacaagacaatgacttgggggctagggtaaaatgaggcgcgaaaatgcagtcgtggatctcttatatatg |
52609333 |
T |
|
| Q |
117 |
taaagagccgtgaaacactaaataaggctctcagaggcaatagtgtgcagccgtctaaaagcccgtactaatgcaacgaacgaactgaaaattaatctaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
52609332 |
taaagagccgtgaaacactaaataaggctctcagaggcaatagtgtgcagccgtctaaaagcacgtactaatgcaacgaacgaactgaa----aatctaa |
52609237 |
T |
|
| Q |
217 |
aaatagaataaaccactgcaaaatcatgtgcacattctcatttcgagaaaagccttaaaataccttgagatatcattgactttgagtattggaatgtctt |
316 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52609236 |
aaatagaataatccactgcaaaatcatgtgcacattctcatttcgagaaaagccttaaaacaccttgagatatcattgactttgagtattggaatgtctt |
52609137 |
T |
|
| Q |
317 |
tgttggtacatcccccacacccatgaagaaccgctgtcgtcaacaaccacatcaacttcctagcatccacttcggcc |
393 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
52609136 |
tgttggtacat--cccacacccatgaagaaccgctgtcgtcaacaaccacatcaacttcctagcacccacttcggcc |
52609062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University