View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261_low_14 (Length: 395)
Name: NF10261_low_14
Description: NF10261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 52035788 - 52036167
Alignment:
| Q |
1 |
tcgggagagaacttattatctgtgaagcttctacaatattagtatttgtcaacaaaataattcgaagtaattgacannnnnnnataggtgttcttgcaag |
100 |
Q |
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| T |
52035788 |
tcgggagagaacttattatctgtgaagcttctacaatattagtatttgtaaacaaaataattcgaagtaattgatatttttt-atacgtgttcttgcaag |
52035886 |
T |
|
| Q |
101 |
ttgtttggataattgatgaaaagaatgaatgaaaaatgtaagaggatggaattgataaaccactcaatagattacattaaccattatttaaccgttttct |
200 |
Q |
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| T |
52035887 |
ttgtttggataattgatgaaaagaatgaatgaaaaatgtaagaggatggaattgataaaccactcaatagattacattaaccatt---taaccgttttct |
52035983 |
T |
|
| Q |
201 |
gtgggaacaggggatgcctcaacattaggcaaggcaactactgttgttagtctgtttgagattctatacagcaagtaaacaataattgcgaatgctaatt |
300 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
52035984 |
gtgggaacaggggatgcctcaacataaggcaaggcaactactgttgttagtctgtttgagattctatacaacaagtaaacaataattgcgaatgctaatt |
52036083 |
T |
|
| Q |
301 |
aagttcacaacaacgagcaattgcatttattccatttaataagaatctctattggtgttgcacaaattcactatacacaggttc |
384 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52036084 |
aagttcacaacaacgaccaattgcatttattccatttaataagaatctctattggtgttgcacaaattcactatacacaggttc |
52036167 |
T |
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