View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261_low_18 (Length: 368)
Name: NF10261_low_18
Description: NF10261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 179 - 358
Target Start/End: Original strand, 52035632 - 52035811
Alignment:
| Q |
179 |
tttttaaaaaagtgtcattttttagagaatgaaataaataaagtagctaaaatttaatacacactcattgcatcgttttgtcaatattgtgatcaaaagc |
278 |
Q |
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| T |
52035632 |
tttttacaaaagtgtcattttttagagaatgaaataaataaagtagctaaaatttaatacacactcattgcatcgttttgtcaatattgtgatcaaaagc |
52035731 |
T |
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| Q |
279 |
atctcatgtcatttttaactcgactcaacttgccgtatgagctatgatatacattgtcgggagagaacttattatctgtg |
358 |
Q |
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| T |
52035732 |
atctcatgtcatttttaactcgactcaacttgccgtatgagcgatgatatacattgtcgggagagaacttattatctgtg |
52035811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 98 - 149
Target Start/End: Original strand, 52035590 - 52035641
Alignment:
| Q |
98 |
gatacgaataatatgctttttctttcacaatctttcattcaatttttacaaa |
149 |
Q |
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| T |
52035590 |
gatacgaataatatgctttttctttcacaatctttcattcaatttttacaaa |
52035641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 52035539 - 52035589
Alignment:
| Q |
22 |
attgaggcagtcttatgttgaaattggtcagagagaataaagtggttcatt |
72 |
Q |
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| T |
52035539 |
attgaggcagtcttatgttgaaattggtcagagacaataaagtggttcatt |
52035589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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