View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261_low_20 (Length: 350)
Name: NF10261_low_20
Description: NF10261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 111; Significance: 6e-56; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 188 - 338
Target Start/End: Complemental strand, 11628927 - 11628777
Alignment:
| Q |
188 |
accgaatttggaaggcagacggcatagaatcataaccacatttttgagccactctcctggcaagttcaagagatattttacccattccatcagagaagac |
287 |
Q |
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| T |
11628927 |
accgaatctggaaggcggacggcatagaatcataaccacatttttgagccactctcctggcaagttcaagagatattttgccaattccatcagagaagac |
11628828 |
T |
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| Q |
288 |
atatctggttttattatctacgtcaaaaataatttcaatctctgtgctgct |
338 |
Q |
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| T |
11628827 |
atatttggttttattatgtacatcaagaataatttcaatttcggtgctgct |
11628777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 17 - 149
Target Start/End: Complemental strand, 11629819 - 11629684
Alignment:
| Q |
17 |
acattttaagcattggattagatgcattattttctaag---tatctgcaacatatttactgaagaaatgtagcaccctaataacttttcctaagttcact |
113 |
Q |
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||||||||||||||||||| ||||||||||||| |||| |||| |||||||||||| | ||||||||||||| |||||||||||||| ||||||||| |
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| T |
11629819 |
acattttaagcattggattggatgcattattttgtaagaagtatcagcaacatatttagtagagaaatgtagcactctaataacttttcccaagttcact |
11629720 |
T |
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| Q |
114 |
tacacaaattttagtgaaagttagttatttatggaa |
149 |
Q |
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| T |
11629719 |
tacacaaattttggagaaagttagttatttatggaa |
11629684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 188 - 297
Target Start/End: Original strand, 11684850 - 11684959
Alignment:
| Q |
188 |
accgaatttggaaggcagacggcatagaatcataaccacatttttgagccactctcctggcaagttcaagagatattttacccattccatcagagaagac |
287 |
Q |
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| T |
11684850 |
accgaatctgaaaggcagatggcattgaatcatgaccacattttttagccactctcctggcaagttcaatagatattttcccgattccatcagagaagac |
11684949 |
T |
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| Q |
288 |
atatctggtt |
297 |
Q |
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|||| ||||| |
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| T |
11684950 |
atatttggtt |
11684959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 188 - 297
Target Start/End: Original strand, 11688862 - 11688971
Alignment:
| Q |
188 |
accgaatttggaaggcagacggcatagaatcataaccacatttttgagccactctcctggcaagttcaagagatattttacccattccatcagagaagac |
287 |
Q |
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||||||| || |||||||| ||||| ||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| || ||||||||||||||||| |
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| T |
11688862 |
accgaatctgaaaggcagatggcattgaatcatgaccacattttttagccactctcctggcaagttcaatagatattttcccgattccatcagagaagac |
11688961 |
T |
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| Q |
288 |
atatctggtt |
297 |
Q |
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|||| ||||| |
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| T |
11688962 |
atatttggtt |
11688971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 214 - 291
Target Start/End: Complemental strand, 11637670 - 11637593
Alignment:
| Q |
214 |
gaatcataaccacatttttgagccactctcctggcaagttcaagagatattttacccattccatcagagaagacatat |
291 |
Q |
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| T |
11637670 |
gaatcatgaccacattttttagccaccctcctggcaagttcaagagatatttttccgattccatcagagaagacatat |
11637593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 188 - 266
Target Start/End: Original strand, 11677113 - 11677191
Alignment:
| Q |
188 |
accgaatttggaaggcagacggcatagaatcataaccacatttttgagccactctcctggcaagttcaagagatatttt |
266 |
Q |
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||||||| || |||||||| ||||||||||||||| ||||| || ||||||| ||||||||||||||||||||||||| |
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| T |
11677113 |
accgaatctgaaaggcagatggcatagaatcataatcacatgctttagccactgtcctggcaagttcaagagatatttt |
11677191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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