View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261_low_22 (Length: 318)
Name: NF10261_low_22
Description: NF10261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 39783407 - 39783105
Alignment:
| Q |
1 |
tgtcacgaccaatattgaagctgcatcggccatttgatgtctatgcgagtttgtgactatgattgaagttgcatcagtcgttcttgaatgcacactggca |
100 |
Q |
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| T |
39783407 |
tgtcacgaccaatattgaagctgcatcggccatttgatgtctatgcgagtctgtgactatgattgaagttgcatcagtcgttcttgaatgcacactggca |
39783308 |
T |
|
| Q |
101 |
aacatagaacnnnnnnnaaaaccatacgtcaattgagtgttgcgagaattttctttcaggtatacgagcttcatcgtttgtatcgaatacaaaagatact |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39783307 |
aacatagaactttttttaaaaccatacgtcaattgagtgttgcgagaattttctttcaggtatacgagcttcatcggttgtatcgaatacaaaagatact |
39783208 |
T |
|
| Q |
201 |
gatgcaaaatatggaggcaagaagaggagttgaagtaaaagaacaagaatggtacttcaagaatgcaattagtttaactcaaaatgctaatcatcattat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
39783207 |
gatgcaaaatatggaggcaagaagaggagttgaagtaaaagaacaagaatggtacttcaagaatgcaattagtttaactcaaaatgctaatcatcatcat |
39783108 |
T |
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| Q |
301 |
aaa |
303 |
Q |
| |
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||| |
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| T |
39783107 |
aaa |
39783105 |
T |
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