View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261_low_24 (Length: 299)
Name: NF10261_low_24
Description: NF10261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 11 - 283
Target Start/End: Original strand, 29444299 - 29444571
Alignment:
| Q |
11 |
agaacctgtgatgcgtagctgaagcaagttgtttctaatgatggatttagtcatgttgattcgcgggaagcgttgaattgatcaggaatggagcatcacc |
110 |
Q |
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| T |
29444299 |
agaacctttgatgcgtagctgaagcaagttgtttctaatgatggatttagtcatgttgattcgcgggaagcgttgaattgatcaggaatggagcatcacc |
29444398 |
T |
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| Q |
111 |
tggttttatatctcttcttgaatggtgtgagatcatttggtcagataccaaatctacatgacttctttcttttccttttctttccatttggtgtatcact |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29444399 |
tggttttatatctcttcttgaatggtgtgagatcatttggtcagataccaaatctacatgacttctttcttttccttttctttccatttggtgtatcact |
29444498 |
T |
|
| Q |
211 |
tggtctgtaattgctaggatcctgctataagtaattcaaagaaaaattgcatatatgtctgtttaggtgtaaa |
283 |
Q |
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| T |
29444499 |
tggtctgtaattgctaggatcctgctataagtaattcaaagaaaaattgcatatatgtctgtttaggtgtaaa |
29444571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 147 - 235
Target Start/End: Original strand, 29454439 - 29454527
Alignment:
| Q |
147 |
ttggtcagataccaaatctacatgacttctttcttttccttttctttccatttggtgtatcacttggtctgtaattgctaggatcctgc |
235 |
Q |
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| T |
29454439 |
ttggtcagatacctaatctacatgacttctttcttttccttttattttcatttggtgtatcacttggtctgtaattgctaggatcctgc |
29454527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 145
Target Start/End: Complemental strand, 29422432 - 29422299
Alignment:
| Q |
11 |
agaacctgtgatgcgtagctgaagcaagttgtttctaatgatggatttagtcatgttgattcgcgggaagcgttgaattgatcaggaatggagcatcacc |
110 |
Q |
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||||||| |||| ||||||||| ||||||||| || ||||||||||||||||||||||| |||||||||||| |||||||| | ||||||||||| || |
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| T |
29422432 |
agaacctttgatttgtagctgaa--aagttgtttgtagtgatggatttagtcatgttgatttgcgggaagcgttaaattgatccgaaatggagcatcgcc |
29422335 |
T |
|
| Q |
111 |
t-ggttttatatctcttcttgaatggtgtgagatca |
145 |
Q |
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| | ||||| ||||||||| | |||||| |||||| |
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| T |
29422334 |
tagtttttaactctcttcttcattggtgtaagatca |
29422299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 29454314 - 29454398
Alignment:
| Q |
19 |
tgatgcgtagctgaagcaagttgtttctaatgatggatttagtcatgttgattcgcgggaagcgttgaattgatcaggaatggag |
103 |
Q |
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| T |
29454314 |
tgatgtgtagctgaagcaagttgtttctagtgatggatttagtcatgttggtgtccgggaagagttaaattgatcaggaatggag |
29454398 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 203 - 282
Target Start/End: Complemental strand, 29422139 - 29422058
Alignment:
| Q |
203 |
gtatcacttggtctgtaattgctaggatcctgctata--agtaattcaaagaaaaattgcatatatgtctgtttaggtgtaa |
282 |
Q |
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|||||||||||||||||| | |||||||| ||||||| |||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
29422139 |
gtatcacttggtctgtaaatactaggatcatgctatataagtaatgcaaagaaaaatggcatatatgtctgtttaggtgtaa |
29422058 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 197 - 282
Target Start/End: Original strand, 29474398 - 29474483
Alignment:
| Q |
197 |
tttggtgtatcacttggtctgtaattgctaggatcctgctataagtaattcaaagaaaaattgcatatatgtctgtttaggtgtaa |
282 |
Q |
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|||||||||| |||||| |||||||||||| ||| ||||||||||||| |||| ||||| || ||||||| ||||||||||||| |
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| T |
29474398 |
tttggtgtatgtcttggtttgtaattgctagtatcttgctataagtaatgcaaacaaaaacggcctatatgtttgtttaggtgtaa |
29474483 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 29473609 - 29473657
Alignment:
| Q |
197 |
tttggtgtatcacttggtctgtaattgctaggatcctgctataagtaat |
245 |
Q |
| |
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|||||||||| |||||| |||||||||||| ||| ||||||||||||| |
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| T |
29473609 |
tttggtgtatgtcttggtttgtaattgctagtatcttgctataagtaat |
29473657 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 151 - 282
Target Start/End: Original strand, 11988623 - 11988751
Alignment:
| Q |
151 |
tcagataccaaatctacatgacttctttcttttccttttctttccatttggtgtatcacttggtctgtaattgctaggatcctgctataagtaattcaaa |
250 |
Q |
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|||||||||| || ||||||||||||||||||||||||| ||| |||||| ||||||||||| || |||||||||| ||||| |||||| ||| |||| |
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| T |
11988623 |
tcagataccatatgtacatgacttctttcttttccttttttttt--tttggtttatcacttggtatgcaattgctaggttcctgttataagcaatacaaa |
11988720 |
T |
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| Q |
251 |
gaaaaattgcatatatgtctgtttaggtgtaa |
282 |
Q |
| |
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||||||| ||||| || |||||||||||||| |
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| T |
11988721 |
gaaaaatgccatatttg-ctgtttaggtgtaa |
11988751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 153 - 283
Target Start/End: Original strand, 12007467 - 12007591
Alignment:
| Q |
153 |
agataccaaatctacatgacttctttcttttccttttctttccatttggtgtatcacttggtctgtaattgctaggatcctgctataagtaattcaaaga |
252 |
Q |
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|||||||| || |||||||||||| |||||||||||||||| ||| |||||||||||||||||||| | |||||||| |||| ||| |||||| |
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| T |
12007467 |
agataccatatgtacatgacttctatcttttccttttcttt------ggtttatcacttggtctgtaattgaaaacatcctgctctaagcaatacaaaga |
12007560 |
T |
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| Q |
253 |
aaaattgcatatatgtctgtttaggtgtaaa |
283 |
Q |
| |
|
||||| || ||||||||||||||||||||| |
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| T |
12007561 |
aaaatgacacatatgtctgtttaggtgtaaa |
12007591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 11988378 - 11988515
Alignment:
| Q |
11 |
agaacctgtgatgcgtagctgaagcaagttgtttcta---atgatggatttagtcatgttgattcgcgggaagcgttgaattgatcaggaatggagcatc |
107 |
Q |
| |
|
||||||| || || |||||||||||||||| ||| || |||||||| || ||||||||| || || |||||| || ||||||| |||||||| ||||| |
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| T |
11988378 |
agaacctttgttgtgtagctgaagcaagttctttatagtgatgatggaatttgtcatgttggtttgcaggaagcattaaattgattaggaatggtgcatc |
11988477 |
T |
|
| Q |
108 |
acctggttttatatctcttcttgaatggtgtgagatca |
145 |
Q |
| |
|
|||| |||||| ||||||||| |||| |||||||||| |
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| T |
11988478 |
acctagttttaactctcttctttaatgttgtgagatca |
11988515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 12019853 - 12019935
Alignment:
| Q |
19 |
tgatgcgtagctgaagcaagttgtttctaatgatggatttagtcatgttgattcgcgggaagcgttgaattgatcaggaatgg |
101 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||| |||||||||||| || |||| | ||||| ||||||| |||||||| |
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| T |
12019853 |
tgatgtgtagctgaagcaagttgtttctagtgatggaattagtcatgttggtttgcggtatgcgttaaattgattaggaatgg |
12019935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 282
Target Start/End: Original strand, 12019961 - 12020081
Alignment:
| Q |
154 |
gataccaaatctacatgacttctttcttttccttttctttccatttggtgtatcacttggtctgtaattgctaggatcctgctataagtaattcaaagaa |
253 |
Q |
| |
|
||||||| || |||||||||||| ||||||||||||| || |||||||||| |||||| |||||| |||| |||||||||||| ||| ||| || |
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| T |
12019961 |
gataccagatgtacatgacttctatcttttccttttcatt------ggtgtatcacctggtctataattgttaggttcctgctataagcaatacaa--aa |
12020052 |
T |
|
| Q |
254 |
aaattgcatatatgtctgtttaggtgtaa |
282 |
Q |
| |
|
| || |||||||||| ||||||||||||| |
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|
| T |
12020053 |
agatggcatatatgtttgtttaggtgtaa |
12020081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 12007198 - 12007331
Alignment:
| Q |
11 |
agaacctgtgatgcgtagctgaagcaagttgtttctaatgatggatttagtcatgttgattcgcgggaagcgttgaattgatcaggaatggagcatcacc |
110 |
Q |
| |
|
||||||||| ||| ||||||||||||| || |||||| |||||| |||||| ||||| || || | | || || ||||||| |||||||||||| | | |
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| T |
12007198 |
agaacctgttatgtgtagctgaagcaaatt-tttctagagatggaattagtcttgttgttttgcagtaggcattaaattgatttggaatggagcattaac |
12007296 |
T |
|
| Q |
111 |
tggttttatatctcttcttgaatggtgtgagatca |
145 |
Q |
| |
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| |||||| | ||||||| ||||||||||||||| |
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|
| T |
12007297 |
tagttttaactttcttctttaatggtgtgagatca |
12007331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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