View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10261_low_29 (Length: 255)
Name: NF10261_low_29
Description: NF10261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261_low_29 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 103 - 255
Target Start/End: Original strand, 7759263 - 7759415
Alignment:
| Q |
103 |
ttctaagtggagttatggagcagccacgatatataagaagttctataaatgtaggaagtgatcatgtaatgattctcgatgctgttgatctaaatctcgc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7759263 |
ttctaagtggagttatggagcagccacgatatataagaagttctataaatgtaggaagtgatcatgtaatgattctcgatgctgttgatctaaatctcgc |
7759362 |
T |
|
| Q |
203 |
tcgtcctcgtcatactcatgctacaaatcgatcaacaaggttcactctcttgc |
255 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7759363 |
tcgtcctcatcatactcatgctacaaatcgatcaacaaggttcactctcttgc |
7759415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 126 - 255
Target Start/End: Original strand, 7819471 - 7819600
Alignment:
| Q |
126 |
ccacgatatataagaagttctataaatgtaggaagtgatcatgtaatgattctcgatgctgttgatctaaatctcgctcgtcctcgtcatactcatgcta |
225 |
Q |
| |
|
||||| |||||||||||||||| || ||||| |||||| | ||||||||||| |||||| || ||||| ||||| ||| | |||||||||||||| || |
|
|
| T |
7819471 |
ccacgctatataagaagttctaaaactgtagaaagtgactaagtaatgattcttgatgctattaatctatatctcactcatagtcgtcatactcatggta |
7819570 |
T |
|
| Q |
226 |
caaatcgatcaacaaggttcactctcttgc |
255 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |
|
|
| T |
7819571 |
caaatcgatcaacaaggttcgctctcttgc |
7819600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University