View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261_low_30 (Length: 250)
Name: NF10261_low_30
Description: NF10261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 7759436 - 7759675
Alignment:
| Q |
1 |
cataacctcatcaacgaggttcaaactaccaccagaaatactgaaactatcgaacgacattcttatcggtatctttcaaaaattagagttgaagaaggaa |
100 |
Q |
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| T |
7759436 |
cataacctcagcaacgaggttcaaactacgaccagaaatactgaaactatcgaacgacattcttatcgttatctttcaaaaattagagttgaagaaggaa |
7759535 |
T |
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| Q |
101 |
tggagtctgaagaaatgatgtgttccatttgtttggttgagcttttggttggaacgcaagcaactcggttgcggtgttcgcatttgtatcacgaaggatg |
200 |
Q |
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| T |
7759536 |
tggagtctgaagaaatgatgtgttctatttgtttggttgagcttttggttggaacgcaagcaactcggttgtggtgttcgcatttgtatcacgaaggatg |
7759635 |
T |
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| Q |
201 |
tattatgaaatggcttggtagatcaaacacttgccctttg |
240 |
Q |
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| T |
7759636 |
tattatgaaatggctttgtagatcaaacacttgccctttg |
7759675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 2 - 237
Target Start/End: Original strand, 7819626 - 7819863
Alignment:
| Q |
2 |
ataacctcatcaacgaggttcaaactaccaccagaaatactgaaactatcgaacgacat--tcttatcggtatctttcaaaaattagagttgaagaagga |
99 |
Q |
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| T |
7819626 |
ataacctcatcaacgaggttcagactactacaagaaatactgaaactattcaaaggcatattctaatcgtaatcttccaaaaattgaagttgaagaagga |
7819725 |
T |
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| Q |
100 |
atggagtctgaagaaatgatgtgttccatttgtttggttgagcttttggttggaacgcaagcaactcggttgcggtgttcgcatttgtatcacgaaggat |
199 |
Q |
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| T |
7819726 |
aaggggtctgaagcaatgatgtgttctatctgtttggcggagcttttggttggatcacaagcaactcggtttccgtgttcgcatttgtatgacgaaggat |
7819825 |
T |
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| Q |
200 |
gtattatgaaatggcttggtagatcaaacacttgccct |
237 |
Q |
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| T |
7819826 |
gtattatgaaatggctaggtagatcaaacacttgccct |
7819863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 237
Target Start/End: Original strand, 7810294 - 7810442
Alignment:
| Q |
89 |
ttgaagaaggaatggagtctgaagaaatgatgtgttccatttgtttggttgagcttttggttggaacgcaagcaactcggttgcggtgttcgcatttgta |
188 |
Q |
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| T |
7810294 |
ttgaagaaggaatgaagtgtgaagctttgatgtgttctatttgtttggtggagctttcggttgggtcgaaagcaattaggttgccgtgctcgcatatcta |
7810393 |
T |
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| Q |
189 |
tcacgaaggatgtattatgaaatggcttggtagatcaaacacttgccct |
237 |
Q |
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| T |
7810394 |
ccacgatgagtgtatcatgaaatggttagatagatcgaacacatgccct |
7810442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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