View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261_low_31 (Length: 250)
Name: NF10261_low_31
Description: NF10261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 52093495 - 52093258
Alignment:
| Q |
1 |
ctctctaaggaatttgaaaggtttgacttgtcttgatttgtcgtctgcgcgtatatcagatcatttgctctcatctcttgcagagcaaggtcttcctttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52093495 |
ctctctaaggaatttgaaaggtttgacttgtcttgatttgtcgtctgcgcgtatatcagatcatttgctctcatctcttgcagagcaaggtcttcctttg |
52093396 |
T |
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| Q |
101 |
aagagactttcgctaaaaaattctatggattatagttatgctggaatctttttgtttgttatcaaaatgtcagtttttacaacatttggatcttcaatat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52093395 |
aagagactttcgctaaaaaattctatggattatagttatgccggaatc-ttttgtttgttatcaaaatgtcagtttttacaacatttggatcttcaatat |
52093297 |
T |
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| Q |
201 |
tcattctatttgaatgatcaag--attgttgggttgtct |
237 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |
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| T |
52093296 |
tcattctatttgaatgatcaagatattgttgggttgtct |
52093258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 52083299 - 52083062
Alignment:
| Q |
1 |
ctctctaaggaatttgaaaggtttgacttgtcttgatttgtcgtctgcgcgtatatcagatcatttgctctcatctcttgcagagcaaggtcttcctttg |
100 |
Q |
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|||| ||||||||||||||||| |||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||| || ||||||| |||||| |
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| T |
52083299 |
ctctttaaggaatttgaaaggtctgacctgtcttgatttgtcgtctttgcgtatatcagaccatttgctctcatctcttgcaaaggaaggtctgcctttg |
52083200 |
T |
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| Q |
101 |
aagagactttcgctaaaaaattctatggattatagttatgctggaatctttttgtttgttatcaaaatgtcagtttttacaacatttggatcttcaatat |
200 |
Q |
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||||||||||| || ||||||| || ||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
52083199 |
aagagactttcactcaaaaattgtacagattatagttatgctggaatc-ttttgtctgttatcaaaatgtcaatttttacaacatttggatcttcaatat |
52083101 |
T |
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| Q |
201 |
tcattctatttgaatgatcaaga--ttgttgggttgtct |
237 |
Q |
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|| |||||||||||||||||| | |||||||||||||| |
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| T |
52083100 |
tcgttctatttgaatgatcaatatgttgttgggttgtct |
52083062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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