View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261_low_34 (Length: 249)
Name: NF10261_low_34
Description: NF10261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 148 - 238
Target Start/End: Complemental strand, 53431532 - 53431442
Alignment:
| Q |
148 |
gcatatgattaatctcaaggaatccagtagcaacaattctaccaacagttacggtcatagattctaagcctgcacctatggcggcattctt |
238 |
Q |
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| T |
53431532 |
gcatatgattaatctcaaggaatccagtagcaacaattctaccaacagttacggtcatagattctaagcctgcacctatggcggcattctt |
53431442 |
T |
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Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 53431675 - 53431592
Alignment:
| Q |
1 |
tatggagacttcccagcaacagtggtaagatcaaaagatgttgccacactccttcaatatgccaattcaacaaggtatgcatgc |
84 |
Q |
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| T |
53431675 |
tatggagacttcccagcaacagtggtaagatcaaaagatgttgccacactcctccaatacgccaattcaacaaggtatgcatgc |
53431592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 155 - 238
Target Start/End: Original strand, 48374227 - 48374310
Alignment:
| Q |
155 |
attaatctcaaggaatccagtagcaacaattctaccaacagttacggtcatagattctaagcctgcacctatggcggcattctt |
238 |
Q |
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| T |
48374227 |
attaatctaaagcaatccagtagcaacaattctaccaacagtcacagtcatagattataagcctgcacctatggtggcaatctt |
48374310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 48374039 - 48374120
Alignment:
| Q |
1 |
tatggagacttcccagcaacagtggtaagatcaaaagatgttgccacactccttcaatatgccaattcaacaaggtatgcat |
82 |
Q |
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| T |
48374039 |
tatgcagacttcccagcaacagtggtaagatcaaaagatgttgtcacactcctcaaatatgtcaattcaacgaggtaagcat |
48374120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 53424523 - 53424448
Alignment:
| Q |
7 |
gacttcccagcaacagtggtaagatcaaaagatgttgccacactccttcaatatgccaattcaacaaggtatgcat |
82 |
Q |
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| T |
53424523 |
gacttcccagcaaccgtggtaagaacaagagatgctgccacaatcctccaatatgtcaattcaacaaggtatgcat |
53424448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 53308631 - 53308566
Alignment:
| Q |
168 |
aatccagtagcaacaattctaccaacagttacggtcatagattctaagcctgcacctatggcggca |
233 |
Q |
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| T |
53308631 |
aatccggtggcaacaattctaccaacagttacaatcatagattataagcctgcacctatggtggca |
53308566 |
T |
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