View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10261_low_37 (Length: 241)

Name: NF10261_low_37
Description: NF10261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10261_low_37
NF10261_low_37
[»] chr6 (11 HSPs)
chr6 (15-225)||(11275919-11276129)
chr6 (15-215)||(11170545-11170745)
chr6 (15-225)||(11209357-11209567)
chr6 (16-225)||(11196688-11196897)
chr6 (15-225)||(11156235-11156445)
chr6 (15-225)||(11161102-11161312)
chr6 (28-225)||(11199853-11200050)
chr6 (71-225)||(11132959-11133113)
chr6 (111-225)||(11241511-11241626)
chr6 (15-215)||(11314726-11314926)
chr6 (16-64)||(11241440-11241488)
[»] scaffold1207 (1 HSPs)
scaffold1207 (15-225)||(853-1063)
[»] chr2 (2 HSPs)
chr2 (76-217)||(7542199-7542340)
chr2 (71-217)||(14703381-14703527)
[»] chr7 (1 HSPs)
chr7 (71-225)||(8581665-8581819)
[»] chr8 (1 HSPs)
chr8 (72-136)||(12528558-12528622)


Alignment Details
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 11276129 - 11275919
Alignment:
Q  15 ttggacgtgtctgttctcacatttgagaatggtgatatcaatgttaaggccattaatggagacactcacctcgggggacaagactttgataatgcaatgg 114  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||    
T  11276129 ttggacgtgtctgttctcacttttgagaatggtgatatcaatgttaaggccattggaggagacactcacctcgggggacaagactttgataatgcaatgg 11276030  T
Q  115 tgaaccattttgtgaaagagttcttgagaaagcataaacttgacattagtggagatccaagagcccttaggaggctgaagactgcttgcgagagagcaaa 214  Q
    |||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||    
T  11276029 tgaaccattttgtgaaagagttcttgaggaagcataaaaatgacattagtggagatccaagagccattaggaggctgaagactgcttgcgagagagtaaa 11275930  T
Q  215 aaggatacttt 225  Q
    |||||||||||    
T  11275929 aaggatacttt 11275919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 11170745 - 11170545
Alignment:
Q  15 ttggacgtgtctgttctcacatttgagaatggtgatatcaatgttaaggccattaatggagacactcacctcgggggacaagactttgataatgcaatgg 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |   |||||||||||||||||||||||||||||||||||||||||||    
T  11170745 ttggacgtgtctgttctcacatttgagaatggtgatatcaatgttaaggccactggaggagacactcacctcgggggacaagactttgataatgcaatgg 11170646  T
Q  115 tgaaccattttgtgaaagagttcttgagaaagcataaacttgacattagtggagatccaagagcccttaggaggctgaagactgcttgcgagagagcaaa 214  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11170645 tgaaccattttgtgaaagagttcttgagaaaacataaactcgacattagtggagatccaagagccattaggaggctgaagactgcttgcgagagagcaaa 11170546  T
Q  215 a 215  Q
    |    
T  11170545 a 11170545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 11209567 - 11209357
Alignment:
Q  15 ttggacgtgtctgttctcacatttgagaatggtgatatcaatgttaaggccattaatggagacactcacctcgggggacaagactttgataatgcaatgg 114  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||   |||||||||||||||||||||||||||||||||||||||||||    
T  11209567 ttggacgtgtctgttctcacatttgaggatggtgatatcaatgttaaggctattgcaggagacactcacctcgggggacaagactttgataatgcaatgg 11209468  T
Q  115 tgaaccattttgtgaaagagttcttgagaaagcataaacttgacattagtggagatccaagagcccttaggaggctgaagactgcttgcgagagagcaaa 214  Q
    |||||||||||||||||||||||||||| ||| | ||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11209467 tgaaccattttgtgaaagagttcttgaggaaggaaaaaatggacattagtggaaatccaagagcccttaggaggctgaagactgcttgcgagagagcaaa 11209368  T
Q  215 aaggatacttt 225  Q
    |||||||||||    
T  11209367 aaggatacttt 11209357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 11196897 - 11196688
Alignment:
Q  16 tggacgtgtctgttctcacatttgagaatggtgatatcaatgttaaggccattaatggagacactcacctcgggggacaagactttgataatgcaatggt 115  Q
    ||||||||||  |||||||||||||||| |||| ||||||||||||||| |||   |||||||||||||| ||||||||||||||||||||| |||||||    
T  11196897 tggacgtgtccattctcacatttgagaacggtgctatcaatgttaaggcgattgcaggagacactcaccttgggggacaagactttgataatacaatggt 11196798  T
Q  116 gaaccattttgtgaaagagttcttgagaaagcataaacttgacattagtggagatccaagagcccttaggaggctgaagactgcttgcgagagagcaaaa 215  Q
    ||||||||||||||||||||||| ||| ||| ||||| | ||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||    
T  11196797 gaaccattttgtgaaagagttctcgaggaagtataaaatcgacattagtggagatccaagagcccttaggaggttgaagtctgcttgcgagaaagcaaaa 11196698  T
Q  216 aggatacttt 225  Q
    ||||||||||    
T  11196697 aggatacttt 11196688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 11156445 - 11156235
Alignment:
Q  15 ttggacgtgtctgttctcacatttgagaatggtgatatcaatgttaaggccattaatggagacactcacctcgggggacaagactttgataatgcaatgg 114  Q
    |||||||||||  |||||||||||||||| |||| ||||||||||||||| |||   |||||||||||||| ||||||||||||||||||||| ||||||    
T  11156445 ttggacgtgtccattctcacatttgagaaaggtgctatcaatgttaaggcgattgcaggagacactcaccttgggggacaagactttgataatacaatgg 11156346  T
Q  115 tgaaccattttgtgaaagagttcttgagaaagcataaacttgacattagtggagatccaagagcccttaggaggctgaagactgcttgcgagagagcaaa 214  Q
    |||||||||||||||| ||||||| ||| ||| ||||| | ||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||    
T  11156345 tgaaccattttgtgaatgagttctcgaggaagtataaaatcgacattagtggagatccaagagcccttaggaggttgaagtctgcttgcgagaaagcaaa 11156246  T
Q  215 aaggatacttt 225  Q
    |||||||||||    
T  11156245 aaggatacttt 11156235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 11161312 - 11161102
Alignment:
Q  15 ttggacgtgtctgttctcacatttgagaatggtgatatcaatgttaaggccattaatggagacactcacctcgggggacaagactttgataatgcaatgg 114  Q
    |||||||||||| ||||||||||||||| ||||| ||||||||||||||| |||   ||||||||||||||  |||||||||||||||||||| ||||||    
T  11161312 ttggacgtgtctattctcacatttgagattggtgctatcaatgttaaggcgattgcaggagacactcaccttaggggacaagactttgataatacaatgg 11161213  T
Q  115 tgaaccattttgtgaaagagttcttgagaaagcataaacttgacattagtggagatccaagagcccttaggaggctgaagactgcttgcgagagagcaaa 214  Q
    |||||||||||||||||||||||| ||| ||| ||||| | ||||||||||||||||||||||||||||||||| ||||  |||||||||||| ||||||    
T  11161212 tgaaccattttgtgaaagagttctcgaggaagtataaaatcgacattagtggagatccaagagcccttaggaggttgaactctgcttgcgagaaagcaaa 11161113  T
Q  215 aaggatacttt 225  Q
    |||||||||||    
T  11161112 aaggatacttt 11161102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 28 - 225
Target Start/End: Complemental strand, 11200050 - 11199853
Alignment:
Q  28 ttctcacatttgagaatggtgatatcaatgttaaggccattaatggagacactcacctcgggggacaagactttgataatgcaatggtgaaccattttgt 127  Q
    ||||||||||||||||||||| ||||||||||||||| |||   |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  11200050 ttctcacatttgagaatggtgctatcaatgttaaggcgattgcaggagacactcaccttgggggacaagactttgataatacaatggtgaaccattttgt 11199951  T
Q  128 gaaagagttcttgagaaagcataaacttgacattagtggagatccaagagcccttaggaggctgaagactgcttgcgagagagcaaaaaggatacttt 225  Q
    ||||||||||| ||| ||| ||||| | |||||||||||||||||||||||||||||||||  |||| |||||||||||| |||||||||||||||||    
T  11199950 gaaagagttctcgaggaagtataaaatcgacattagtggagatccaagagcccttaggaggtagaagtctgcttgcgagaaagcaaaaaggatacttt 11199853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 71 - 225
Target Start/End: Complemental strand, 11133113 - 11132959
Alignment:
Q  71 tggagacactcacctcgggggacaagactttgataatgcaatggtgaaccattttgtgaaagagttcttgagaaagcataaacttgacattagtggagat 170  Q
    |||||| |||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||    
T  11133113 tggagatactcacctcgggggacaagactttgataacacaatggtgaaccatttcgtgaaagagttcttgaggaagcataaaattgacattagtggagat 11133014  T
Q  171 ccaagagcccttaggaggctgaagactgcttgcgagagagcaaaaaggatacttt 225  Q
    | || |||||||||  || ||||| |||| || |||| |||||| ||||||||||    
T  11133013 cgaaaagcccttagacggttgaagtctgcatgtgagaaagcaaagaggatacttt 11132959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 111 - 225
Target Start/End: Original strand, 11241511 - 11241626
Alignment:
Q  111 atggtgaaccattttgtgaaagagttcttgagaaagcataaacttgacattagtggagatccaagagcccttaggaggctgaagactgcttgcgagagag 210  Q
    |||||||||||||||||||||||||||| ||| ||| ||||| | ||||||||| ||||||||||||||||||||||| ||||| |||||||||||| ||    
T  11241511 atggtgaaccattttgtgaaagagttctcgaggaagtataaaatcgacattagtagagatccaagagcccttaggaggttgaagtctgcttgcgagaaag 11241610  T
Q  211 c-aaaaaggatacttt 225  Q
    | ||||||||||||||    
T  11241611 caaaaaaggatacttt 11241626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 215
Target Start/End: Original strand, 11314726 - 11314926
Alignment:
Q  15 ttggacgtgtctgttctcacatttgagaatggtgatatcaatgttaaggccattaatggagacactcacctcgggggacaagactttgataatgcaatgg 114  Q
    ||||| |||||| |||||||| ||||||||||||  ||||| |||| |||| ||   |||||||||||||| ||||||||||||||  ||||| ||||||    
T  11314726 ttggatgtgtctattctcacacttgagaatggtgccatcaaagttagggccgttggcggagacactcaccttgggggacaagacttcaataatacaatgg 11314825  T
Q  115 tgaaccattttgtgaaagagttcttgagaaagcataaacttgacattagtggagatccaagagcccttaggaggctgaagactgcttgcgagagagcaaa 214  Q
    ||||  |||||||| ||| ||||  ||  | | ||||| | |||||||||||||||  || | ||||||||||| ||||| | |||||||||| ||||||    
T  11314826 tgaaatattttgtggaagtgttccggaagaggtataaaatagacattagtggagatttaacatcccttaggaggttgaagtcagcttgcgagaaagcaaa 11314925  T
Q  215 a 215  Q
    |    
T  11314926 a 11314926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 11241440 - 11241488
Alignment:
Q  16 tggacgtgtctgttctcacatttgagaatggtgatatcaatgttaaggc 64  Q
    ||||||||||  ||||||||||||||||||||| |||||||||||||||    
T  11241440 tggacgtgtccattctcacatttgagaatggtgctatcaatgttaaggc 11241488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1207 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 1063 - 853
Alignment:
Q  15 ttggacgtgtctgttctcacatttgagaatggtgatatcaatgttaaggccattaatggagacactcacctcgggggacaagactttgataatgcaatgg 114  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||   ||||||||||||||| |||| |||||||||||||| |||||||    
T  1063 ttggacgtgtctgttctcaaatttgagaatggtgatatcaatgttaaggctattgtaggagacactcacctcagggggcaagactttgataacgcaatgg 964  T
Q  115 tgaaccattttgtgaaagagttcttgagaaagcataaacttgacattagtggagatccaagagcccttaggaggctgaagactgcttgcgagagagcaaa 214  Q
    |||||||||||||||||| |||||| || ||| ||||| | |||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||    
T  963 tgaaccattttgtgaaagtgttcttaaggaagtataaaatcgacattagtggagatccaagagccgttaggaggctgaagactgcttgtgagagatcaaa 864  T
Q  215 aaggatacttt 225  Q
    |||||||||||    
T  863 aaggatacttt 853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 217
Target Start/End: Complemental strand, 7542340 - 7542199
Alignment:
Q  76 acactcacctcgggggacaagactttgataatgcaatggtgaaccattttgtgaaagagttcttgagaaagcataaacttgacattagtggagatccaag 175  Q
    |||||||||| || ||| ||||||||||||||  ||||| |||| | |||||  ||||||||  ||||||| | ||| | |||||||||||  ||||||     
T  7542340 acactcaccttggtggagaagactttgataatagaatggcgaactactttgtacaagagttcaagagaaagaacaaagtggacattagtgggaatccaaa 7542241  T
Q  176 agcccttaggaggctgaagactgcttgcgagagagcaaaaag 217  Q
    |||| | |||||| |||  |||||||| ||||| ||||||||    
T  7542240 agccttgaggaggttgagaactgcttgtgagagggcaaaaag 7542199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 217
Target Start/End: Complemental strand, 14703527 - 14703381
Alignment:
Q  71 tggagacactcacctcgggggacaagactttgataatgcaatggtgaaccattttgtgaaagagttcttgagaaagcataaacttgacattagtggagat 170  Q
    |||| ||||||||||||||||| | ||||| |||||   |||||||||| | |||||  ||||||||  ||||||  | | | | |||||||||||| ||    
T  14703527 tggaaacactcacctcgggggagaggacttcgataacagaatggtgaactactttgttcaagagttcaagagaaaaaacagattggacattagtggaaat 14703428  T
Q  171 ccaagagcccttaggaggctgaagactgcttgcgagagagcaaaaag 217  Q
    |||| |||| | |||||  |||  || ||||||||||| ||||||||    
T  14703427 ccaaaagccttaaggagcttgagaaccgcttgcgagagggcaaaaag 14703381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 225
Target Start/End: Complemental strand, 8581819 - 8581665
Alignment:
Q  71 tggagacactcacctcgggggacaagactttgataatgcaatggtgaaccattttgtgaaagagttcttgagaaagcataaacttgacattagtggagat 170  Q
    ||||||||||||||| || ||  |||| ||||||||   ||||||||| || ||||||   ||||||  |||||| ||||||   || |||| |||| ||    
T  8581819 tggagacactcacctgggaggggaagattttgataacagaatggtgaatcactttgtgtcggagttcaagagaaaacataaagaggagattattggaaat 8581720  T
Q  171 ccaagagcccttaggaggctgaagactgcttgcgagagagcaaaaaggatacttt 225  Q
    |||| |||| |||| ||| ||| ||||||||| |||||||| ||||||| |||||    
T  8581719 ccaaaagccattagaaggttgaggactgcttgtgagagagcgaaaaggacacttt 8581665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 12528622 - 12528558
Alignment:
Q  72 ggagacactcacctcgggggacaagactttgataatgcaatggtgaaccattttgtgaaagagtt 136  Q
    |||||||||||||| || ||| | ||||||||||||  ||||||||| || ||||||||||||||    
T  12528622 ggagacactcaccttggaggagaggactttgataatcgaatggtgaatcactttgtgaaagagtt 12528558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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