View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10261_low_4 (Length: 526)

Name: NF10261_low_4
Description: NF10261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10261_low_4
NF10261_low_4
[»] chr8 (5 HSPs)
chr8 (16-309)||(36991545-36991837)
chr8 (308-515)||(36991860-36992067)
chr8 (329-515)||(37001598-37001784)
chr8 (183-292)||(36996871-36996968)
chr8 (182-227)||(34592492-34592537)
[»] chr4 (10 HSPs)
chr4 (308-515)||(22188066-22188277)
chr4 (329-515)||(13682790-13682976)
chr4 (346-515)||(13689358-13689527)
chr4 (183-309)||(13683408-13683534)
chr4 (183-309)||(22187918-22188044)
chr4 (183-294)||(26646318-26646428)
chr4 (194-309)||(26646620-26646734)
chr4 (183-275)||(33078057-33078149)
chr4 (329-414)||(26646776-26646861)
chr4 (183-294)||(13689750-13689846)
[»] chr7 (2 HSPs)
chr7 (308-493)||(8596707-8596896)
chr7 (245-303)||(8596620-8596678)


Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 16 - 309
Target Start/End: Original strand, 36991545 - 36991837
Alignment:
Q  16 cttttttcccgaacatatcttcggtggaatgtcaaactcaaaggtggcaatgtttagcctaatttgcttcaaatctatggctttttgtcttgcttcttca 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  36991545 cttttttcccgaacatatcttcggtggaatgtcaaactcaaaggtggcaatgtttagcctaatttgcttcaaatctatggctttttgtcttgcttcttct 36991644  T
Q  116 cttccatccatacagacggatcccttgaaggagctcactatgagtaaagttcactttaannnnnnngcctgcatccattaaataaataattagaatatga 215  Q
    || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  36991645 ctcccatccatacagacggatcccttgaaggagttcactatgagtaaagttcactttaa-ttttttgcctgcatccattaaataaataattagaatatga 36991743  T
Q  216 tcagcctgcacagtctactggatatcaagccaaaagcctagcaacactgttgtatcacactttttattattaactaattcataaaattaaacaa 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  36991744 tcagcctgcacagtctactggatatcaagccaaaagcctagcaacactgttgcatcacactttttattattaagtaattcataaaattaaacaa 36991837  T

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Target: chr8; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 308 - 515
Target Start/End: Original strand, 36991860 - 36992067
Alignment:
Q  308 aaatacaagatcccatttcattaaataaatcatatatggtacctgaatagatagtcaagaacaaatatttccacaatcatgcaacccaactttgtgacaa 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  36991860 aaatacaagatcccatttcattaaataaatcatatatggtacctgaatagatagtcaagaacaaatatttccacaatcctgcaacccaactctgtgacaa 36991959  T
Q  408 tgctttcgtaatcctcttcagtaggtgtatttacctttataggtttatactctataccaacaacgctattaattaggcatggaacatcaccaaccaaccc 507  Q
    ||||||| |||||||||||||||||||| |||||||| |||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  36991960 tgctttcataatcctcttcagtaggtgtgtttaccttcataggtttataccctataccaacaacgatattaattagggatggaacatcaccaaccaaccc 36992059  T
Q  508 aaacctat 515  Q
    ||||||||    
T  36992060 aaacctat 36992067  T

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Target: chr8; HSP #3
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 329 - 515
Target Start/End: Original strand, 37001598 - 37001784
Alignment:
Q  329 taaataaatcatatatggtacctgaatagatagtcaagaacaaatatttccacaatcatgcaacccaactttgtgacaatgctttcgtaatcctcttcag 428  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||    
T  37001598 taaatatatcataaatggtacctgaatagatagtcaagaacaaatatttccacaatcctgcaacccaactctgtgacaatgctttcataatcctcttcag 37001697  T
Q  429 taggtgtatttacctttataggtttatactctataccaacaacgctattaattaggcatggaacatcaccaaccaacccaaacctat 515  Q
    ||||||| |||||||| |||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  37001698 taggtgtgtttaccttcataggtttataccctataccaacaacgatattaattagggatggaacatcaccaaccaacccaaacctat 37001784  T

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Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 183 - 292
Target Start/End: Original strand, 36996871 - 36996968
Alignment:
Q  183 cctgcatccattaaataaataattagaatatgatcagcctgcacagtctactggatatcaagccaaaagcctagcaacactgttgtatcacactttttat 282  Q
    |||||||||||||||||||||||||||||||||||||||||            |||||||||| ||||||||| | ||||| ||||||||||||||||||    
T  36996871 cctgcatccattaaataaataattagaatatgatcagcctg------------gatatcaagcaaaaagcctaccgacactattgtatcacactttttat 36996958  T

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Target: chr8; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 34592537 - 34592492
Alignment:
Q  182 gcctgcatccattaaataaataattagaatatgatcagcctgcaca 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  34592537 gcctgcatccattaaataaataattagaatatgatcagcctgcaca 34592492  T

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Target: chr4 (Bit Score: 147; Significance: 3e-77; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 308 - 515
Target Start/End: Original strand, 22188066 - 22188277
Alignment:
Q  308 aaatacaagatcccatttcattaaataaatcatat----atggtacctgaatagatagtcaagaacaaatatttccacaatcatgcaacccaactttgtg 403  Q
    |||||||||||||||| ||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |     
T  22188066 aaatacaagatcccatgtcattaaataaatcatatatatatggtacctgaatagatagtcaagaacaaatatttccacaatcatgcaaccccactttatt 22188165  T
Q  404 acaatgctttcgtaatcctcttcagtaggtgtatttacctttataggtttatactctataccaacaacgctattaattaggcatggaacatcaccaacca 503  Q
    ||| ||||||| ||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||| |||||||| |||| ||||||||||||||||||    
T  22188166 acactgctttcataatcctcttcagtaggtgtattaacctttataggttgatactctgtaccaacaatgctattaaatagggatggaacatcaccaacca 22188265  T
Q  504 acccaaacctat 515  Q
    ||||||||||||    
T  22188266 acccaaacctat 22188277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 329 - 515
Target Start/End: Complemental strand, 13682976 - 13682790
Alignment:
Q  329 taaataaatcatatatggtacctgaatagatagtcaagaacaaatatttccacaatcatgcaacccaactttgtgacaatgctttcgtaatcctcttcag 428  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||    
T  13682976 taaataaatcatatatgatacctgaatagatagtcaagaacaaatatttccacaatcatgcaacccaactttgtgacatttctttcataatcctcttcag 13682877  T
Q  429 taggtgtatttacctttataggtttatactctataccaacaacgctattaattaggcatggaacatcaccaaccaacccaaacctat 515  Q
    ||   ||  ||||| ||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||    
T  13682876 taaacgtgattaccgttacaggtttatactctataccaacaacgctattaaatagggatggaacatcaccaaccaactcaaacctat 13682790  T

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Target: chr4; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 346 - 515
Target Start/End: Complemental strand, 13689527 - 13689358
Alignment:
Q  346 gtacctgaatagatagtcaagaacaaatatttccacaatcatgcaacccaactttgtgacaatgctttcgtaatcctcttcagtaggtgtatttaccttt 445  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    |||| ||||||||||||||||||||| ||||| ||    
T  13689527 gtacctgaatacatagtcaagaacaaatatttccacaatcatgcaacccaactttgtgacataattttcataatcctcttcagtaggtgtaattaccatt 13689428  T
Q  446 ataggtttatactctataccaacaacgctattaattaggcatggaacatcaccaaccaacccaaacctat 515  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||    
T  13689427 ataggtttatactctataccaacaacgctattaaatagggatggaacatcaccaaccaactcaaacctat 13689358  T

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Target: chr4; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 183 - 309
Target Start/End: Complemental strand, 13683534 - 13683408
Alignment:
Q  183 cctgcatccattaaataaataattagaatatgatcagcctgcacagtctactggatatcaagccaaaagcctagcaacactgttgtatcacactttttat 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  13683534 cctgcatccattaaataaataattagaatatgatcagcctgcacagtctactgggtatcaagccaaaagcctagcaacactattgtatcacactttttat 13683435  T
Q  283 tattaactaattcataaaattaaacaa 309  Q
    ||||||||||||  | |||||||||||    
T  13683434 tattaactaattttttaaattaaacaa 13683408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 183 - 309
Target Start/End: Original strand, 22187918 - 22188044
Alignment:
Q  183 cctgcatccattaaataaataattagaatatgatcagcctgcacagtctactggatatcaagccaaaagcctagcaacactgttgtatcacactttttat 282  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  22187918 cctgcatccattaaatagataattagaatatgatcagcctgcacagtctactggatatcaagccaaaagcctagcaacactattgtatcacactttttat 22188017  T
Q  283 tattaactaattcataaaattaaacaa 309  Q
    ||||||||| ||  ||||||| |||||    
T  22188018 tattaactagtttttaaaattgaacaa 22188044  T

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Target: chr4; HSP #6
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 183 - 294
Target Start/End: Original strand, 26646318 - 26646428
Alignment:
Q  183 cctgcatccattaaataaataattagaatatgatcagcctgcacagtctactggatatcaagccaaaagcctagcaacactgttgtatcacactttttat 282  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||  |||||||||| ||||||    
T  26646318 cctgcatccattaaataaataattagaatatgatcagcctgaacagtctactgtatatcaagccaaaagcctagcaacactaatgtatcacac-ttttat 26646416  T
Q  283 tattaactaatt 294  Q
    ||||||||||||    
T  26646417 tattaactaatt 26646428  T

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Target: chr4; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 194 - 309
Target Start/End: Original strand, 26646620 - 26646734
Alignment:
Q  194 taaataaataattagaatatgatcagcctgcacagtctactggatatcaagccaaaagcctagcaacactgttgtatcacactttttattattaactaat 293  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||| ||||| |||||||||||    
T  26646620 taaataaataattagaatatgatcagcctgcacggtctactggatatcaagccaaaagcctaacaacactattgtatcacac-ttttactattaactaat 26646718  T
Q  294 tcataaaattaaacaa 309  Q
    |  | |||||||||||    
T  26646719 tttttaaattaaacaa 26646734  T

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Target: chr4; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 183 - 275
Target Start/End: Complemental strand, 33078149 - 33078057
Alignment:
Q  183 cctgcatccattaaataaataattagaatatgatcagcctgcacagtctactggatatcaagccaaaagcctagcaacactgttgtatcacac 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||| |||||||    
T  33078149 cctgcatccattaaataaataattagaatatgatcagcctgcacagtctactagataacaagccaaaagcctagcaacactattgcatcacac 33078057  T

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Target: chr4; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 329 - 414
Target Start/End: Original strand, 26646776 - 26646861
Alignment:
Q  329 taaataaatcatatatggtacctgaatagatagtcaagaacaaatatttccacaatcatgcaacccaactttgtgacaatgctttc 414  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||    
T  26646776 taaataagtcatatatggtacctgaatagatagtcaagaacaaatatttccagaatcatgcaaccaaactgtgtgacaatgctttc 26646861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 183 - 294
Target Start/End: Complemental strand, 13689846 - 13689750
Alignment:
Q  183 cctgcatccattaaataaataattagaatatgatcagcctgcacagtctactggatatcaagccaaaagcctagcaacactgttgtatcacactttttat 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||               |||||||||||||||||| ||||||||||||||||||    
T  13689846 cctgcatccattaaataaataattagaatatgatcagcctgcacattc---------------caaaagcctagcaacactattgtatcacactttttat 13689762  T

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Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 308 - 493
Target Start/End: Original strand, 8596707 - 8596896
Alignment:
Q  308 aaatacaagatcccatttcattaaataaatcatatatggtacctgaatag----atagtcaagaacaaatatttccacaatcatgcaacccaactttgtg 403  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||    
T  8596707 aaatacaagatcctgtttcattaaataaatcatatatggtacctgaatagatagatagtcaagaacaaatatttccacaatcatgcaacccaactttgtg 8596806  T
Q  404 acaatgctttcgtaatcctcttcagtaggtgtatttacctttataggtttatactctataccaacaacgctattaattaggcatggaaca 493  Q
     || ||||||| ||||||||||||||||||||| ||||| ||||||||||||||||  ||| |||||| || |||| |||| ||||||||    
T  8596807 gcattgctttcataatcctcttcagtaggtgtaattaccgttataggtttatactcagtacaaacaacccttttaaatagggatggaaca 8596896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 245 - 303
Target Start/End: Original strand, 8596620 - 8596678
Alignment:
Q  245 ccaaaagcctagcaacactgttgtatcacactttttattattaactaattcataaaatt 303  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||    
T  8596620 ccaaaagcctagcaacactgttgtatcacactttttattataaactaatttttaaaatt 8596678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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