View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261_low_41 (Length: 239)
Name: NF10261_low_41
Description: NF10261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 17471721 - 17471503
Alignment:
| Q |
4 |
gaaaaagaagaaggataaacaaatatgttcattttttcaggtttaactatgaaacaaattnnnnnnntgcaatgaaagttaatagcatttacacgccact |
103 |
Q |
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| T |
17471721 |
gaaaaaaaagaaggacaaa-aaatatgttcattttttcaggtttaaccatgaaacaaattaaaaaa-tgcaatgaaagttaatagcatttacacgccatt |
17471624 |
T |
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| Q |
104 |
aaaccatacattttttagtcagattttacattttaatcgcagaaaaataagaaggaatattctttgatgagagagatatgctgtcatnnnnnnnttaaat |
203 |
Q |
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| T |
17471623 |
aaaccattcattttttagtcataatttatgttttaatcacagaaaaataaggaggaatattcttcgatgagagagatatgctgtcataaaagaattaaat |
17471524 |
T |
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| Q |
204 |
gaataattgtatttgtaagtg |
224 |
Q |
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| T |
17471523 |
gaatagttgcatttgcaagtg |
17471503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 17581493 - 17581711
Alignment:
| Q |
4 |
gaaaaagaagaaggataaacaaatatgttcattttttcaggtttaactatgaaacaaattnnnnnnntgcaatgaaagttaatagcatttacacgccact |
103 |
Q |
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| T |
17581493 |
gaaaaaaaagaaggacaaa-aaatatgttcattttttcaggtttaaccatgaaacaaattaaaaaa-tgcaatgaaagttaatagcatttacacgccatt |
17581590 |
T |
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| Q |
104 |
aaaccatacattttttagtcagattttacattttaatcgcagaaaaataagaaggaatattctttgatgagagagatatgctgtcatnnnnnnnttaaat |
203 |
Q |
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||||||| ||||||||||||| | |||| |||||||| |||||||||||| |||||||||||| |||||||||||||||||||||| |||||| |
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| T |
17581591 |
aaaccattcattttttagtcataatttatgttttaatcacagaaaaataaggaggaatattcttcgatgagagagatatgctgtcataaaagaattaaat |
17581690 |
T |
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| Q |
204 |
gaataattgtatttgtaagtg |
224 |
Q |
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| T |
17581691 |
gaatagttgcatttgcaagtg |
17581711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 43381133 - 43380908
Alignment:
| Q |
1 |
tatgaaaaagaagaaggataaacaaatatgttcattttttcaggtttaactatgaaacaaattnnnnnnntgcaatgaaag----ttaatagcatttaca |
96 |
Q |
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|||| ||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
43381133 |
tatggaaaagaagaag-ataaaaaaatatgttcattttttcagatttaactatgaaacaaatt-aaaatatgcaatgaaagttaattaatagcatttaca |
43381036 |
T |
|
| Q |
97 |
cgccactaaaccatacattttttagtcagattttac-attttaatcgcagaaaaataagaaggaatattctttgatgagagagatatgctgtcatnnnnn |
195 |
Q |
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| T |
43381035 |
caccattaaaccattcattttttagtcaccatttacgtttttaatc-aaaaaaaaaaagaagaaatattctttgatgagagagatatgttgtcataaaag |
43380937 |
T |
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| Q |
196 |
nnttaaatgaataattgtatttgtaagtg |
224 |
Q |
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||||||||||||||| ||||| ||||| |
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| T |
43380936 |
aattaaatgaataattgcatttgcaagtg |
43380908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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