View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261_low_44 (Length: 230)
Name: NF10261_low_44
Description: NF10261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 8e-88; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 7 - 199
Target Start/End: Original strand, 31941789 - 31941977
Alignment:
| Q |
7 |
ggagaagcagagacggagcggttggaaggaatactttgaccaagcgaaagagttgatcgaaacagacgatggacctccgcggtggttttcgccgttggag |
106 |
Q |
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| T |
31941789 |
ggagaagcagagacggagcggttggaaggaatactttgagcaagcgaaagagttgatcgaaacagacgatggacctccgcggtggttttcgccgttggag |
31941888 |
T |
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| Q |
107 |
tccagttcacagtgggataattctcctctcatgctcttcttgcctggtcagtcgtccttctttcttaccagcgcgcggttaaacaaattcaaa |
199 |
Q |
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| T |
31941889 |
tgcagttcacagtgggataattctcctctcatgctcttcttgcctggtcagtagtccttctttcttacca----gcggttaaacaaattcaaa |
31941977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 7 - 154
Target Start/End: Original strand, 31956020 - 31956167
Alignment:
| Q |
7 |
ggagaagcagagacggagcggttggaaggaatactttgaccaagcgaaagagttgatcgaaacagacgatggacctccgcggtggttttcgccgttggag |
106 |
Q |
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| T |
31956020 |
ggagaagcagagacggagcggttgggaagaatactttgagcaagcgaaagagttgattgaagaggacggtggaccgccacggtggttttcgccgttggag |
31956119 |
T |
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| Q |
107 |
tccagttcacagtgggataattctcctctcatgctcttcttgcctggt |
154 |
Q |
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| T |
31956120 |
tgcagttcacagtgggacaattctcctctcatactcttcttgcctggt |
31956167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 15 - 147
Target Start/End: Original strand, 31967904 - 31968039
Alignment:
| Q |
15 |
agagacggagcggttggaaggaatactttgaccaagcgaaagagttgatcgaaa---cagacgatggacctccgcggtggttttcgccgttggagtccag |
111 |
Q |
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| T |
31967904 |
agagacggaccggttggaaggaatattttgagcatgcgaaggagtttatcggagttgctgacggtggacctccgcggtggttttcgccgtcggagtgtgg |
31968003 |
T |
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| Q |
112 |
ttcacagtgggataattctcctctcatgctcttctt |
147 |
Q |
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| T |
31968004 |
ttcgcggttggataattctcctcttatgctcttctt |
31968039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 107
Target Start/End: Complemental strand, 49789548 - 49789512
Alignment:
| Q |
71 |
gacgatggacctccgcggtggttttcgccgttggagt |
107 |
Q |
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| T |
49789548 |
gacggtggacctccgcggtggttatcgccgttggagt |
49789512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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