View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261_low_46 (Length: 226)
Name: NF10261_low_46
Description: NF10261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261_low_46 |
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| [»] scaffold0221 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 14457911 - 14458109
Alignment:
| Q |
11 |
agcagagacctttctgataacaacttcactgggaatattcccaatgaaataacaaaactatccggtttagttgttctcaacttgtcaagaaaccatataa |
110 |
Q |
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| T |
14457911 |
agcatagacctttctgataacaacttcactgggaatattcccaatgaaataacaaaactatccggtttagttgttctcaacttgtcaagaaaccatataa |
14458010 |
T |
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| Q |
111 |
ctggccaaattcacgaaaccatgtcaaatctgcttcaattatcatctcttgatctctcaaacaaccaactttctggaccaattccttcaagcttgtctt |
209 |
Q |
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| T |
14458011 |
ctggccaaattcacgaaaccatgtcaaatctgcttcaattatcatctcttgatctctcaaacaaccaactttctggaccaattccttcaagcttgtctt |
14458109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 10 - 209
Target Start/End: Complemental strand, 14493440 - 14493241
Alignment:
| Q |
10 |
aagcagagacctttctgataacaacttcactgggaatattcccaatgaaataacaaaactatccggtttagttgttctcaacttgtcaagaaaccatata |
109 |
Q |
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| T |
14493440 |
aagcatagacctttctaataataacttcagtggaaatattccaaatgagataacaaaactatttggtttggtggttctcaacttgtcaagaaaccatata |
14493341 |
T |
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| Q |
110 |
actggccaaattcacgaaaccatgtcaaatctgcttcaattatcatctcttgatctctcaaacaaccaactttctggaccaattccttcaagcttgtctt |
209 |
Q |
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| T |
14493340 |
agtggtcaaattcctaaaaccatttcaaatctgcttcaattatcatcccttgatctctcaaacaaccaactttccggaacaattccttcaagcttgtctt |
14493241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 14469016 - 14468846
Alignment:
| Q |
16 |
agacctttctgataacaacttcactgggaatattcccaatgaaataacaaaactatccggtttagttgttctcaacttgtcaagaaaccatataactggc |
115 |
Q |
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| T |
14469016 |
agacctttctcataacaacttcattggaaatattcccaatgaaataacaaaactatctggtttgatgattctcaacttgtcaagaaaccatataactggc |
14468917 |
T |
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| Q |
116 |
caaattcacgaaaccatgtcaaatctgcttcaattatcatctcttgatctctcaaacaaccaactttctgg |
186 |
Q |
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| T |
14468916 |
aaaattcctgaaaccatgtcaaatctgcatcaactagaatctcttgatctctcgagcaaccgactttctgg |
14468846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0221 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0221
Description:
Target: scaffold0221; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 209
Target Start/End: Original strand, 10164 - 10203
Alignment:
| Q |
170 |
aacaaccaactttctggaccaattccttcaagcttgtctt |
209 |
Q |
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| T |
10164 |
aacaaccaactttctggaacaattccttcaagcttgtctt |
10203 |
T |
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