View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261_low_7 (Length: 460)
Name: NF10261_low_7
Description: NF10261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 443
Target Start/End: Complemental strand, 50713112 - 50712697
Alignment:
| Q |
18 |
actttcgacccttatgccaattccatcaattatttgcttgcgtcctacattattccttatgttggcctcactggatatgttggagctattcctgaattgc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50713112 |
actttcgacccttatgccaattccatcaattatttgcttgcgtcctacattattccttatgttggcctcactggatatgttggagctattcctgaattgc |
50713013 |
T |
|
| Q |
118 |
aagaaactacgtccaagaaggtatattagcctaacttatctaactttatcaaatccaatttataatcttgaaggagtttttatttgatatataccacgaa |
217 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
50713012 |
aagaatctacgtccaagaaggtatattagcctaacttatctaactttatcaaatcc--tttataatcttgaaggagtttttatttgatatataccacgaa |
50712915 |
T |
|
| Q |
218 |
agtgaaaatgtctcattattttttgaaatgcttgcaatttgatgctatacatttctgtttagttcgatgtgcaaaagtgagataaattttgcatcataca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50712914 |
agtgaaaatgtctcattattttttgaaatgcttgcaatttgatgctatacatttctgtttagttcgatgtgcaaaagtgagataaattttgcatcataca |
50712815 |
T |
|
| Q |
318 |
caagttaattttcatcattggatcaaatgcgatatgatgaaaatttctacacctaattagaaataagttagagatgaatttcacaacttatgtgaactta |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
50712814 |
caagttaattttcatcattggatcaaatgcgatatgatgaaaatttctacacc---ttagaaataagttagagatgaatttcacaacttatgtgaac--- |
50712721 |
T |
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| Q |
418 |
aattaaagttggcaaattcttatgat |
443 |
Q |
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|||||||||||||||||||||||| |
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| T |
50712720 |
--ttaaagttggcaaattcttatgat |
50712697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 343
Target Start/End: Original strand, 2818964 - 2818998
Alignment:
| Q |
309 |
catcatacacaagttaattttcatcattggatcaa |
343 |
Q |
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|||||||||||||||| |||||||||||||||||| |
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| T |
2818964 |
catcatacacaagttagttttcatcattggatcaa |
2818998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 101
Target Start/End: Original strand, 12762195 - 12762227
Alignment:
| Q |
69 |
attccttatgttggcctcactggatatgttgga |
101 |
Q |
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| T |
12762195 |
attccttatgttggccttactggatatgttgga |
12762227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 13004710 - 13004754
Alignment:
| Q |
292 |
aagtgagataaattttgcatcatacacaagttaattttcatcatt |
336 |
Q |
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||||||||||||||||||||||| |||||||| |||||| |||| |
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| T |
13004710 |
aagtgagataaattttgcatcattcacaagtttgttttcaccatt |
13004754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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