View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10262_high_2 (Length: 330)
Name: NF10262_high_2
Description: NF10262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10262_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 44 - 315
Target Start/End: Original strand, 47079569 - 47079840
Alignment:
| Q |
44 |
aagaatcaaaaacacacaatatttagtccaaaatttgaaatattggtgtaaacatttgcaaaataatctgtatcagcagtaacggtgataacgatgatga |
143 |
Q |
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| T |
47079569 |
aagaatcaaaaacacacaatatttagtccaaaatttaaaatattggtgtaaacatttgcaaaacaatctgtatcagcagtaacagtgataacgatgatga |
47079668 |
T |
|
| Q |
144 |
tgaattagaaatggttggtacctcaacttgcgtgaacaatggttgaaaaccttgagcagtgtagaagaaatcgactgcgtcattgttattgttagcggtt |
243 |
Q |
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| T |
47079669 |
tgaattagaaatggttggtacctcaacatgcgtgaacaatggttgaaaaccttgagcggtgtagaagaaatcgacggcgtcattgttattgttagtggtt |
47079768 |
T |
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| Q |
244 |
ccagtttgagcattaacacctccaacagcttgtttggctcctttcaagtcagaaaaacatgaccccattata |
315 |
Q |
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| T |
47079769 |
ccagtttgagcattaacacctccgacagcttgtttggctcctttcaagtcagaaaaacacgaccccattata |
47079840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 315
Target Start/End: Original strand, 37241140 - 37241182
Alignment:
| Q |
273 |
ttgtttggctcctttcaagtcagaaaaacatgaccccattata |
315 |
Q |
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| T |
37241140 |
ttgtttggctcctttcaagtcagaaaaacacgactccattata |
37241182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 18227928 - 18227879
Alignment:
| Q |
178 |
aacaatggttgaaaaccttgagcagtgtagaagaaatcgactgcgtcatt |
227 |
Q |
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| T |
18227928 |
aacaatggctgaaaaccttgcgcggtgtagaagaaatcaacggcgtcatt |
18227879 |
T |
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