View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10262_high_6 (Length: 256)
Name: NF10262_high_6
Description: NF10262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10262_high_6 |
 | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
| [»] scaffold0475 (2 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 1281662 - 1281418
Alignment:
| Q |
1 |
gtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccatttttgtggatcactaggc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1281662 |
gtgaatttcggaagcattacagttatgactccagagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccatttttgtggatcactaggc |
1281563 |
T |
|
| Q |
101 |
ctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1281562 |
ctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagt |
1281463 |
T |
|
| Q |
201 |
gttgaaccacccttcaatcggtggattcttgactcattgctgatg |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1281462 |
gttgaaccacccttcaatcggtggattcttgactcattgcggatg |
1281418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 161; Significance: 6e-86; HSPs: 30)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 4617570 - 4617326
Alignment:
| Q |
1 |
gtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccatttttgtggatcactaggc |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||| || |||||| | | |||||||||||||||| |||| ||| |||||||| ||||||||||||||| |||| |
|
|
| T |
4617570 |
gtgaatttcggcagcattacagttatgacacccgagcaattactggaatttgcttggggtttggccaattgcaagaaatcatttttgtggatcataaggc |
4617471 |
T |
|
| Q |
101 |
ctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagt |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||| ||| | ||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4617470 |
ctgatcttgtcattggtggctcagtgattttctcatctgagtttacaaatgaaattgcagatagaggcctaatagcaagttggtgtccacaagacaaagt |
4617371 |
T |
|
| Q |
201 |
gttgaaccacccttcaatcggtggattcttgactcattgctgatg |
245 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
4617370 |
gttgaaccacccttcaatcggaggattcttgactcattgcggatg |
4617326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 4602337 - 4602099
Alignment:
| Q |
1 |
gtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccatttttgtggatcactaggc |
100 |
Q |
| |
|
|||||||| || ||||||||||||||||| || | ||| | ||||| ||||||||| |||| ||| || | ||||||||||||||||||| ||||| |
|
|
| T |
4602337 |
gtgaattttggcagcattacagttatgacaccccatcaattattagaattcgcttggggtttggccaattgccataaaccatttttgtggatcattaggc |
4602238 |
T |
|
| Q |
101 |
ctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagt |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4602237 |
ctgatcttgtcattggtggctcagtgattttgtcatctgagtttacaaatgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagt |
4602138 |
T |
|
| Q |
201 |
gttgaaccacccttcaatcggtggattcttgactcattg |
239 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
4602137 |
gttgaaccacccttcgatcggcggattcttgactcattg |
4602099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 49 - 245
Target Start/End: Original strand, 4514753 - 4514949
Alignment:
| Q |
49 |
tttgcttggggtctggctaatagcaagaaaccatttttgtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcga |
148 |
Q |
| |
|
|||||||||||| |||| |||||||||||| | ||||| ||||||| ||||||||||||||||||||| ||||||||| ||||||| ||||| |||| || |
|
|
| T |
4514753 |
tttgcttggggtttggccaatagcaagaaaacctttttatggatcattaggcctgatcttgtcattggtggctcagtggttttgtcgtctgagtttgtga |
4514852 |
T |
|
| Q |
149 |
atgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagtgttgaaccacccttcaatcggtggattcttgactcattgctgatg |
245 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||| |||| |
|
|
| T |
4514853 |
atgaaattgcagatagaggcctaatagcaagttggtgtccacaagagaaagttttgaaccacccttcaattggcggattcttgactcattgcggatg |
4514949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 4564259 - 4564015
Alignment:
| Q |
1 |
gtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccatttttgtggatcactaggc |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||| || | ||||| ||||||||||||||| |||| ||| |||| ||||| ||||||||||||| ||||| |
|
|
| T |
4564259 |
gtgaattttggaagcattacagttatgacaccaaaacaactgttggaatttgcttgggggttggccaattgcaataaaccctttttgtggatcattaggc |
4564160 |
T |
|
| Q |
101 |
ctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagt |
200 |
Q |
| |
|
|||| ||||||||||| |||||||| ||||||||||||| |||| |||||||||||||||||||||| |||| ||||||||||||||||| |||||||| |
|
|
| T |
4564159 |
ctgaccttgtcattggtggctcagtcgttttgtcatctgagtttgtgaatgaaatttcagatagaggcttaattgcaagttggtgtccacaggagaaagt |
4564060 |
T |
|
| Q |
201 |
gttgaaccacccttcaatcggtggattcttgactcattgctgatg |
245 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||| |||| |
|
|
| T |
4564059 |
attgaaccacccttcaattggcggattcttgactcattgcggatg |
4564015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 4461668 - 4461433
Alignment:
| Q |
4 |
aatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccatttttgtggatcactaggcctg |
103 |
Q |
| |
|
||||| || ||||| |||||||||||||| || ||||| || |||||||||||| ||||| ||||||||||||| ||||| ||||||| |||||||| |
|
|
| T |
4461668 |
aattttggcagcatcacagttatgactcctgatcaactgttagagtttgcttggggtttggctgatagcaagaaaccctttttatggatcattaggcctg |
4461569 |
T |
|
| Q |
104 |
atcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagtgtt |
203 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||| |||||| |||| | |
|
|
| T |
4461568 |
atcttgtcattggcggctcgtttattttgtcatctgagtttgtgaatgaaatttcagatagaggcctaatagcaagctggtgtccgcaagagcaagtact |
4461469 |
T |
|
| Q |
204 |
gaaccacccttcaatcggtggattcttgactcattg |
239 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4461468 |
gaaccacccttcaattggtggattcttgactcattg |
4461433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 4506405 - 4506161
Alignment:
| Q |
1 |
gtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccatttttgtggatcactaggc |
100 |
Q |
| |
|
|||||||| |||||||| ||| ||||| |||||||| || || || |||||||||||| |||| |||||||||||||| ||||||||||||| ||||| |
|
|
| T |
4506405 |
gtgaattttggaagcatcacaattatgtctccggagaaatttttagagtttgcttggggtttggccaatagcaagaaaccctttttgtggatcattaggc |
4506306 |
T |
|
| Q |
101 |
ctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagt |
200 |
Q |
| |
|
|||||||||| ||||| ||||||||| ||||||| || || ||||| |||||||||||||||||| |||| |||||||| |||||| ||||||||||||| |
|
|
| T |
4506305 |
ctgatcttgtaattggtggctcagtggttttgtcttcagagtttgcaaatgaaatttcagatagaagccttatagcaagctggtgttcacaagagaaagt |
4506206 |
T |
|
| Q |
201 |
gttgaaccacccttcaatcggtggattcttgactcattgctgatg |
245 |
Q |
| |
|
||| || ||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
4506205 |
gttaaatcacccttcaattggtggattcttgactcattgcggatg |
4506161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 49 - 245
Target Start/End: Complemental strand, 4561005 - 4560810
Alignment:
| Q |
49 |
tttgcttggggtctggctaatagcaagaaaccatttttgtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcga |
148 |
Q |
| |
|
|||||||||||| |||| || ||||||||||||||||| ||||||| ||||||||||||||||||||| ||||| ||| |||| |||||||| ||| || |
|
|
| T |
4561005 |
tttgcttggggtttggccaacagcaagaaaccatttttatggatcattaggcctgatcttgtcattggtggctcggtggttttctcatctgattttt-ga |
4560907 |
T |
|
| Q |
149 |
atgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagtgttgaaccacccttcaatcggtggattcttgactcattgctgatg |
245 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||| |||| |
|
|
| T |
4560906 |
aagaaatttcagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggattcttgactcattgcggatg |
4560810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 49 - 245
Target Start/End: Complemental strand, 4574808 - 4574612
Alignment:
| Q |
49 |
tttgcttggggtctggctaatagcaagaaaccatttttgtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcga |
148 |
Q |
| |
|
|||||||||||| |||| || ||||| ||||| ||||||||||||| ||||||||||||||||||||| ||||| ||| |||| |||||||| ||| || |
|
|
| T |
4574808 |
tttgcttggggtttggccaacagcaaaaaaccctttttgtggatcattaggcctgatcttgtcattggtggctcggtggttttctcatctgattttttga |
4574709 |
T |
|
| Q |
149 |
atgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagtgttgaaccacccttcaatcggtggattcttgactcattgctgatg |
245 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||| |||| |
|
|
| T |
4574708 |
aagaaatttcagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatg |
4574612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 49 - 245
Target Start/End: Complemental strand, 3172241 - 3172045
Alignment:
| Q |
49 |
tttgcttggggtctggctaatagcaagaaaccatttttgtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcga |
148 |
Q |
| |
|
|||||||||||| | || || ||||||||||| ||||||||||| | ||||||||||||||||||||| ||||| || |||||||||| || |||| || |
|
|
| T |
3172241 |
tttgcttggggtttagccaacagcaagaaaccctttttgtggattattaggcctgatcttgtcattggtggctcggttgttttgtcatcggagtttgtga |
3172142 |
T |
|
| Q |
149 |
atgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagtgttgaaccacccttcaatcggtggattcttgactcattgctgatg |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| || |||||||||||||| ||| |||| |
|
|
| T |
3172141 |
atgaaatttcagatagaggcctaatagcaagttggtgtccgcaagagaaagtgttgaaccatccttcaattggcggattcttgactcactgcggatg |
3172045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 49 - 245
Target Start/End: Original strand, 4266798 - 4266994
Alignment:
| Q |
49 |
tttgcttggggtctggctaatagcaagaaaccatttttgtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcga |
148 |
Q |
| |
|
|||||||||||| |||| || |||||||| || ||||||||||| | ||||||||||||||||||||| |||||||| ||||||||||||| ||| | |
|
|
| T |
4266798 |
tttgcttggggtttggccaacagcaagaacccttttttgtggataattaggcctgatcttgtcattgggggctcagttgttttgtcatctgattttttta |
4266897 |
T |
|
| Q |
149 |
atgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagtgttgaaccacccttcaatcggtggattcttgactcattgctgatg |
245 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||| |||| |
|
|
| T |
4266898 |
aagaaatttcagatagaggactaatagcaagttggtgtccacaagataaagtgttgaaccacccttcgattggtggattcttgactcattgcggatg |
4266994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 46 - 239
Target Start/End: Complemental strand, 4458098 - 4457904
Alignment:
| Q |
46 |
gaatttgcttggggtctggctaatagcaagaaa-ccatttttgtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgacttt |
144 |
Q |
| |
|
||||||||||||| | |||| || ||||||||| || ||||||||||| ||||||||||||||||||||||| ||||| || |||||||||| || ||| |
|
|
| T |
4458098 |
gaatttgcttgggttttggccaacagcaagaaaaccttttttgtggataactaggcctgatcttgtcattggtggctcggttgttttgtcatcggatttt |
4457999 |
T |
|
| Q |
145 |
gcgaatgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagtgttgaaccacccttcaatcggtggattcttgactcattg |
239 |
Q |
| |
|
| |||||||| ||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4457998 |
gtgaatgaaacttctgatagaggcttaatagcaagttggtgtccacaagataaagtgttgaaccacccttcaatcggaggattcttgactcattg |
4457904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 49 - 239
Target Start/End: Original strand, 4613350 - 4613540
Alignment:
| Q |
49 |
tttgcttggggtctggctaatagcaagaaaccatttttgtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcga |
148 |
Q |
| |
|
|||||||||||| |||| ||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||| || |||| || |
|
|
| T |
4613350 |
tttgcttggggtttggcgaatagcaagcaaccctttttgtggatcattaggcctgatcttgtcattggcggctcagttgttttgtcatcagagtttgtga |
4613449 |
T |
|
| Q |
149 |
atgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagtgttgaaccacccttcaatcggtggattcttgactcattg |
239 |
Q |
| |
|
||||||||||||||||||||||||| || || |||||||| |||||| |||| || |||||||||||||| || ||||||||||||||||| |
|
|
| T |
4613450 |
atgaaatttcagatagaggcctaatcgcgagctggtgtcctcaagagcaagtattaaaccacccttcaattggcggattcttgactcattg |
4613540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 4622690 - 4622452
Alignment:
| Q |
1 |
gtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccatttttgtggatcactaggc |
100 |
Q |
| |
|
|||||||| || ||||||||||| ||||||| || ||||| || |||||||||||| ||||| ||||||||||||| ||||||||||||| ||||| |
|
|
| T |
4622690 |
gtgaattttggcagcattacagtgatgactcgagatcaactattagagtttgcttggggtttggctgatagcaagaaaccctttttgtggatcattaggc |
4622591 |
T |
|
| Q |
101 |
ctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagt |
200 |
Q |
| |
|
|||| |||||||| |||||||| | |||||||||||||| |||| |||||||||||||| |||||||||||| ||| ||||||||||||||||| |||| |
|
|
| T |
4622590 |
ctgaccttgtcatgggcggctcgtttattttgtcatctgagtttgagaatgaaatttcaggtagaggcctaatcgcaggttggtgtccacaagaggaagt |
4622491 |
T |
|
| Q |
201 |
gttgaaccacccttcaatcggtggattcttgactcattg |
239 |
Q |
| |
|
| ||||||||| |||| |||||||||||||||||||| |
|
|
| T |
4622490 |
acttaaccaccctgcaattggtggattcttgactcattg |
4622452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 49 - 239
Target Start/End: Original strand, 4504029 - 4504219
Alignment:
| Q |
49 |
tttgcttggggtctggctaatagcaagaaaccatttttgtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcga |
148 |
Q |
| |
|
|||||||||||| |||| |||||||||||||| ||||||||||| | ||||||||||||||| ||||| ||||||| | | ||||||||||| |||| || |
|
|
| T |
4504029 |
tttgcttggggtttggccaatagcaagaaaccttttttgtggattattaggcctgatcttgttattggtggctcagaggtgttgtcatctgattttgtga |
4504128 |
T |
|
| Q |
149 |
atgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagtgttgaaccacccttcaatcggtggattcttgactcattg |
239 |
Q |
| |
|
|||||| ||| ||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4504129 |
atgaaacttctaatagaggacttgtagcaagttggtgtccacaagataaagtgttgaaccacccttcaatcggaggattcttgactcattg |
4504219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 49 - 239
Target Start/End: Complemental strand, 4626451 - 4626261
Alignment:
| Q |
49 |
tttgcttggggtctggctaatagcaagaaaccatttttgtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcga |
148 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||| ||||||||||||| ||||||||||||||| ||||| |||||| | |||| |||||| || |||| || |
|
|
| T |
4626451 |
tttgcttggggtttggctgatagcaagaaaccctttttgtggatcattaggcctgatcttgtgattggtggctcatttatttcgtcatccgagtttgaga |
4626352 |
T |
|
| Q |
149 |
atgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagtgttgaaccacccttcaatcggtggattcttgactcattg |
239 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||| |||||||| ||||||||||| |||||||| |
|
|
| T |
4626351 |
atgaaatttcagatagaggcctaatcgcaagctggtgtccgcaagagaaagtactgaaccatccttcaattggtggattcttaactcattg |
4626261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 49 - 239
Target Start/End: Original strand, 4489987 - 4490177
Alignment:
| Q |
49 |
tttgcttggggtctggctaatagcaagaaaccatttttgtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcga |
148 |
Q |
| |
|
||||| |||||| |||| || ||||||||||| ||||||||||||| ||||||||||||||| ||||| |||||| | | ||||||||||| ||| || |
|
|
| T |
4489987 |
tttgcatggggtttggccaacagcaagaaaccctttttgtggatcattaggcctgatcttgttattggtggctcacaggtgttgtcatctgattttttga |
4490086 |
T |
|
| Q |
149 |
atgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagtgttgaaccacccttcaatcggtggattcttgactcattg |
239 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||||||||||||||||| || ||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
4490087 |
aagaaatttcagatagaggactaatagcaagttggtgtccacaagagaaggtattgaatcacccttcaattggtggattcttgactcattg |
4490177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 49 - 245
Target Start/End: Complemental strand, 4481193 - 4480997
Alignment:
| Q |
49 |
tttgcttggggtctggctaatagcaagaaaccatttttgtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcga |
148 |
Q |
| |
|
|||||||||||| | || |||||||| ||| ||||||||||| | |||| || ||||||||||||| ||||||||| | ||||||||||| | | || |
|
|
| T |
4481193 |
tttgcttggggttttgccaatagcaaaaaaaactttttgtggattattaggtctaatcttgtcattggtggctcagtggtgttgtcatctgagtatttga |
4481094 |
T |
|
| Q |
149 |
atgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagtgttgaaccacccttcaatcggtggattcttgactcattgctgatg |
245 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
4481093 |
aagaaatttcaaatagaggcctaatagcaagttggtgtccacaagagaaagttttgaaccacccttcaatcggcggattcttgactcattgcggatg |
4480997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 4299405 - 4299640
Alignment:
| Q |
1 |
gtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccatttttgtggatcactaggc |
100 |
Q |
| |
|
|||||||| || ||| |||||||||||||||| |||||||| || ||||||||||| |||| ||| ||| |||||||||||||||||||| ||||| |
|
|
| T |
4299405 |
gtgaattttggcagcgttacagttatgactccagagcaactgttagagattgcttggggtttggccaattgcaggaaaccatttttgtggatcattaggc |
4299504 |
T |
|
| Q |
101 |
ctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagt |
200 |
Q |
| |
|
| || |||||||||||||||| | |||||||||||||| |||| ||||||||||||| |||||||||||| ||||| | |||||||||||| |||| |
|
|
| T |
4299505 |
cagaccttgtcattggcggcttgtttattttgtcatctgagtttgagaatgaaatttcaaatagaggcctaaccgcaagctagtgtccacaagaacaagt |
4299604 |
T |
|
| Q |
201 |
gttgaaccacccttcaatcggtggattcttgactca |
236 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
4299605 |
actgaaccacccttcaattggtggattcttgactca |
4299640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 4516869 - 4516631
Alignment:
| Q |
1 |
gtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccatttttgtggatcactaggc |
100 |
Q |
| |
|
|||||||| |||||||| || || |||||||| || ||||| || || ||||||||| |||| || ||||||||||| ||||||||||| | ||||| |
|
|
| T |
4516869 |
gtgaattttggaagcatcacggtcatgactccagatcaactgttagagttcgcttggggtttggccaacagcaagaaaccttttttgtggattattaggc |
4516770 |
T |
|
| Q |
101 |
ctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagt |
200 |
Q |
| |
|
|||| ||||||||||| ||||| || ||||||||||| || |||| |||||||| ||| ||||||||| |||||||||| |||||||| ||||||||||| |
|
|
| T |
4516769 |
ctgaccttgtcattggtggctcggttattttgtcatccgattttgtgaatgaaacttcggatagaggcgtaatagcaagctggtgtccgcaagagaaagt |
4516670 |
T |
|
| Q |
201 |
gttgaaccacccttcaatcggtggattcttgactcattg |
239 |
Q |
| |
|
||||||||| |||||| | || ||||||||||||||||| |
|
|
| T |
4516669 |
gttgaaccatccttcagttggaggattcttgactcattg |
4516631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 49 - 245
Target Start/End: Complemental strand, 4579932 - 4579736
Alignment:
| Q |
49 |
tttgcttggggtctggctaatagcaagaaaccatttttgtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcga |
148 |
Q |
| |
|
||||| |||||| | || ||||||||| |||| ||||||||||||| |||||| ||||||||||| |||||||||| |||||||||| || |||| || |
|
|
| T |
4579932 |
tttgcatggggtttagcaaatagcaagcaaccctttttgtggatcattaggcccgatcttgtcatcggcggctcagctgttttgtcatcggagtttgtga |
4579833 |
T |
|
| Q |
149 |
atgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagtgttgaaccacccttcaatcggtggattcttgactcattgctgatg |
245 |
Q |
| |
|
|||||||||||||||||||||||||| | || |||||||| |||||| |||| |||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
4579832 |
atgaaatttcagatagaggcctaataacgagctggtgtccgcaagagcaagtactgaaccacccttcaattggtggattcttgactcattgcggatg |
4579736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 49 - 245
Target Start/End: Complemental strand, 4598671 - 4598475
Alignment:
| Q |
49 |
tttgcttggggtctggctaatagcaagaaaccatttttgtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcga |
148 |
Q |
| |
|
|||||||||||| |||| |||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||| || |||||||||| || |||| || |
|
|
| T |
4598671 |
tttgcttggggtttggccaatagcaagaaaccctttttgtggatcattaggcctgatcttgtcattggtggctcggttgttttgtcatcggagtttgtga |
4598572 |
T |
|
| Q |
149 |
atgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagtgttgaaccacccttcaatcggtggattcttgactcattgctgatg |
245 |
Q |
| |
|
|||||||||||||||||||| || | ||||| ||||||| |||||| |||| || ||||| |||||||| ||||||||||| ||||||||| |||| |
|
|
| T |
4598571 |
atgaaatttcagatagaggcttagttgcaagctggtgtctgcaagagcaagtattaaaccatccttcaattggtggattcttaactcattgcggatg |
4598475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 49 - 239
Target Start/End: Complemental strand, 4592731 - 4592541
Alignment:
| Q |
49 |
tttgcttggggtctggctaatagcaagaaaccatttttgtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcga |
148 |
Q |
| |
|
|||||||||||| |||| ||| |||| ||||| ||||||||||||| ||||||||||||||||||||| ||| || | |||||||||| || |||| || |
|
|
| T |
4592731 |
tttgcttggggtttggccaattgcaataaaccttttttgtggatcattaggcctgatcttgtcattggtggcacaattgttttgtcatcggagtttgtga |
4592632 |
T |
|
| Q |
149 |
atgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagtgttgaaccacccttcaatcggtggattcttgactcattg |
239 |
Q |
| |
|
|||||||||||||||||||| |||| || || |||||||| |||||| |||| || |||||||||||||| |||||||||||||||||||| |
|
|
| T |
4592631 |
atgaaatttcagatagaggcgtaatcgcgagctggtgtcctcaagagcaagtattaaaccacccttcaattggtggattcttgactcattg |
4592541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 4 - 245
Target Start/End: Complemental strand, 4470348 - 4470107
Alignment:
| Q |
4 |
aatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccatttttgtggatcactaggcctg |
103 |
Q |
| |
|
|||||||| ||| | ||||||||| |||| ||| |||| || |||||||||||| |||| ||||||||| |||| ||||||||||||| |||||| | |
|
|
| T |
4470348 |
aatttcggcagcgtcacagttatgtctccagagaaactgttagagtttgcttggggtttggcaaatagcaagcaaccctttttgtggatcattaggcccg |
4470249 |
T |
|
| Q |
104 |
atcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagtgtt |
203 |
Q |
| |
|
||||||||||||||||||| || |||| ||||| || ||| |||| ||||||||||||||||||||| | | |||||||| |||||| |||| | |
|
|
| T |
4470248 |
atcttgtcattggcggctcggtagttttctcatcagagattgtaaatggaatttcagatagaggcctaatcgtgaactggtgtcctcaagagcaagtact |
4470149 |
T |
|
| Q |
204 |
gaaccacccttcaatcggtggattcttgactcattgctgatg |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4470148 |
gaaccacccttcaatcggtggattcttgactcattgcggatg |
4470107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 4259738 - 4259982
Alignment:
| Q |
1 |
gtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccatttttgtggatcactaggc |
100 |
Q |
| |
|
|||||||| || |||||||||||||||||||| || ||| || || ||||||||||| |||| |||||||||||||| ||||||||||||| ||||| |
|
|
| T |
4259738 |
gtgaattttggcagcattacagttatgactccagatcaatttttagagtttgcttggggattggccaatagcaagaaaccctttttgtggatcattaggc |
4259837 |
T |
|
| Q |
101 |
ctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagt |
200 |
Q |
| |
|
|||| || | ||||| ||||| | |||||||||||||| |||| || ||||||||| |||||||||||||| || || |||||||| |||||| |||| |
|
|
| T |
4259838 |
ctgacctcattattggtggctcctttattttgtcatctgagtttgagagtgaaatttcggatagaggcctaatcgcgagctggtgtccgcaagagcaagt |
4259937 |
T |
|
| Q |
201 |
gttgaaccacccttcaatcggtggattcttgactcattgctgatg |
245 |
Q |
| |
|
|||||||| ||||| | ||||||||||| ||||||||| |||| |
|
|
| T |
4259938 |
actgaaccactcttcagttggtggattcttaactcattgcggatg |
4259982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 49 - 236
Target Start/End: Complemental strand, 4586136 - 4585949
Alignment:
| Q |
49 |
tttgcttggggtctggctaatagcaagaaaccatttttgtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcga |
148 |
Q |
| |
|
|||||||||||| |||| ||||||||| ||| ||||| ||||||| ||| ||||||||||||||||| || || || ||||||||||||| ||| || |
|
|
| T |
4586136 |
tttgcttggggtttggccaatagcaagcaacattttttatggatcattagacctgatcttgtcattggtggttccttggttttgtcatctgagtttaaga |
4586037 |
T |
|
| Q |
149 |
atgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagtgttgaaccacccttcaatcggtggattcttgactca |
236 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||| || |||||| |||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4586036 |
atgaaatttcagatagaggcctaatcgcgggttggtgcccgcaagagcaagtattgaaccacccttcaattggtggattcttgactca |
4585949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 70 - 239
Target Start/End: Complemental strand, 4568535 - 4568366
Alignment:
| Q |
70 |
agcaagaaaccatttttgtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcc |
169 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||| | ||||||||||| |||||||| ||||||||||| || |||| ||||| || ||| |||||||||| |
|
|
| T |
4568535 |
agcaagaaaccttttttgtggatcattaggccttagcttgtcattggtggctcagttattttgtcatccgagtttgtgaatggaacttcggatagaggcc |
4568436 |
T |
|
| Q |
170 |
taatagcaagttggtgtccacaagagaaagtgttgaaccacccttcaatcggtggattcttgactcattg |
239 |
Q |
| |
|
||||||||| |||||||| |||||| |||||||||||||||||||| | || |||||||||||||||| |
|
|
| T |
4568435 |
aaatagcaagctggtgtccgcaagagcaagtgttgaaccacccttcagttggacgattcttgactcattg |
4568366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 49 - 236
Target Start/End: Complemental strand, 4571472 - 4571285
Alignment:
| Q |
49 |
tttgcttggggtctggctaatagcaagaaaccatttttgtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcga |
148 |
Q |
| |
|
||||| |||||| | || ||||||||| ||| ||||||||||||| |||||| |||||||||||||| |||||||| |||||||||| || |||| || |
|
|
| T |
4571472 |
tttgcatggggtttagcaaatagcaagcaactctttttgtggatcattaggcccgatcttgtcattggtggctcagttgttttgtcatcggagtttgtga |
4571373 |
T |
|
| Q |
149 |
atgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagtgttgaaccacccttcaatcggtggattcttgactca |
236 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||| | ||||||||||| |||||||| |||||||| ||||| ||||||||||| |
|
|
| T |
4571372 |
atgaaatttcagatagaggcctaattgctggttggtgctcgcaagagaaagtattgaaccatccttcaattggtggtttcttgactca |
4571285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 49 - 239
Target Start/End: Complemental strand, 4557625 - 4557435
Alignment:
| Q |
49 |
tttgcttggggtctggctaatagcaagaaaccatttttgtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcga |
148 |
Q |
| |
|
||||| |||||| | || ||||||||| |||| ||||||||||||| |||||| ||||||||||| || |||||||| |||||||||| || |||| | |
|
|
| T |
4557625 |
tttgcatggggtttagcaaatagcaagcaaccctttttgtggatcattaggcccgatcttgtcatcggtggctcagttgttttgtcatcggagtttgtca |
4557526 |
T |
|
| Q |
149 |
atgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagtgttgaaccacccttcaatcggtggattcttgactcattg |
239 |
Q |
| |
|
||||||||||||||||||||||||| || | ||||| || |||||| |||| || ||||| |||||||| |||||||||||||||||||| |
|
|
| T |
4557525 |
atgaaatttcagatagaggcctaatcgcgggctggtgcccgcaagagcaagtattaaaccatccttcaattggtggattcttgactcattg |
4557435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 4256208 - 4256433
Alignment:
| Q |
1 |
gtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccatttttgtggatcactaggc |
100 |
Q |
| |
|
|||||||| || |||||||||||||||||||| || ||||| || ||||||||||| |||| ||||||||||||||||||||||| |||| ||||| |
|
|
| T |
4256208 |
gtgaattttggcagcattacagttatgactccagatcaactgttagagtttgcttggggattggccaatagcaagaaaccatttttgtgtatcattaggc |
4256307 |
T |
|
| Q |
101 |
ctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagt |
200 |
Q |
| |
|
|||| || |||||||| ||||| | ||||||||||||| | |||| |||||||| ||||| | ||||||||||| |||||| |||| |
|
|
| T |
4256308 |
ctgacctcgtcattggtggctcctttattttgtcatctg-------------agtttcggatagaggactaatcgagagttggtgtccgcaagagcaagt |
4256394 |
T |
|
| Q |
201 |
gttgaaccacccttcaatcggtggattcttgactcattg |
239 |
Q |
| |
|
|||||||| ||||| | |||||||||||||||||||| |
|
|
| T |
4256395 |
actgaaccactcttcagttggtggattcttgactcattg |
4256433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 4493346 - 4493265
Alignment:
| Q |
158 |
cagatagaggcctaatagcaagttggtgtccacaagagaaagtgttgaaccacccttcaatcggtggattcttgactcattg |
239 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||| || ||||||||| ||| || |||||||||||||||||||| |
|
|
| T |
4493346 |
cagatagaggcctaattgctagttggtgtccacaagagaaactgctgaaccaccattcgattggtggattcttgactcattg |
4493265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 1674774 - 1674542
Alignment:
| Q |
1 |
gtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccatttttgtggatcactaggc |
100 |
Q |
| |
|
||||||||||| ||||||| ||||||||||| || ||||| ||| |||||||||||| |||| || |||||||||| ||||||||||||||||||| |
|
|
| T |
1674774 |
gtgaatttcggtagcattattgttatgactccagatcaactattggagtttgcttggggtttggccgattgcaagaaaccttttttgtggatcactaggc |
1674675 |
T |
|
| Q |
101 |
ctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagt |
200 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||| ||| ||| |||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
1674674 |
ctgatcttgtcattggtggctcagtggttttgtcatctgagtttatgaaagaaatttcagatagaggcctaatatcaaattggtgtccacaagagaaagt |
1674575 |
T |
|
| Q |
201 |
gttgaaccacccttcaatcggtggattcttgac |
233 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
|
|
| T |
1674574 |
gttgaaccacccttcaatcggcggattcttgac |
1674542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 49 - 227
Target Start/End: Original strand, 20863475 - 20863653
Alignment:
| Q |
49 |
tttgcttggggtctggctaatagcaagaaaccatttttgtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcga |
148 |
Q |
| |
|
||||| |||||| |||| || ||||||||||| ||||||||||||| ||||||||||||||||||||| ||||| |||||||| ||||||| |||| || |
|
|
| T |
20863475 |
tttgcatggggtttggccaacagcaagaaaccctttttgtggatcattaggcctgatcttgtcattggtggctcggtgattttttcatctgcgtttgtga |
20863574 |
T |
|
| Q |
149 |
atgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagtgttgaaccacccttcaatcggtggatt |
227 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||| |||||||| |||||||| |
|
|
| T |
20863575 |
atgaaatttcagatagaggcctaatcgcgagttggtgtccacaagagaaggtgttgaaccatccttcaattggtggatt |
20863653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 49 - 239
Target Start/End: Original strand, 16685899 - 16686089
Alignment:
| Q |
49 |
tttgcttggggtctggctaatagcaagaaaccatttttgtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcga |
148 |
Q |
| |
|
|||||||||||| || | ||||||||| ||| ||| ||||||| |||| |||||||||||||| |||| || ||| ||||||||||||| ||| || |
|
|
| T |
16685899 |
tttgcttggggtttgaccaatagcaagcaacattttcaatggatcattaggtctgatcttgtcatttgcggttccgtggttttgtcatctgagtttaaga |
16685998 |
T |
|
| Q |
149 |
atgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagtgttgaaccacccttcaatcggtggattcttgactcattg |
239 |
Q |
| |
|
||||||| ||||||||| ||||||| || || ||||| || |||||| |||| || ||||| |||||||||||||||||||| |||||||| |
|
|
| T |
16685999 |
atgaaatctcagatagaagcctaatcgcgagctggtgcccgcaagagcaagtattaaaccatccttcaatcggtggattcttaactcattg |
16686089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 3303 - 3541
Alignment:
| Q |
1 |
gtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccatttttgtggatcactaggc |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||| | ||||| ||||||||||||||| |||| ||||||||||||| ||||||||||||| ||||| |
|
|
| T |
3303 |
gtgaatttcggcagcattacagttatgactccaaatcaactgttagaatttgcttggggtttggccgatagcaagaaaccgtttttgtggatcattaggc |
3402 |
T |
|
| Q |
101 |
ctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagt |
200 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||| || |||| ||||||||||||||||||||||||||| |||| ||||||||||||||| |||| |
|
|
| T |
3403 |
ctgatcttgtcattggcggctcgtttattttgtcatcagaatttgagaatgaaatttcagatagaggcctaatcacaagctggtgtccacaagagcaagt |
3502 |
T |
|
| Q |
201 |
gttgaaccacccttcaatcggtggattcttgactcattg |
239 |
Q |
| |
|
||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
3503 |
actgatccacccttcaattggtggattcttgactcattg |
3541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 13 - 239
Target Start/End: Complemental strand, 3086956 - 3086730
Alignment:
| Q |
13 |
agcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccatttttgtggatcactaggcctgatcttgtca |
112 |
Q |
| |
|
||||||||||||||||||| |||||||| || |||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3086956 |
agcattacagttatgactcaagagcaactattagagtttgcttggggtttggccaatagcaagaaaccatttttgtggatcattaggcctgatcttgtca |
3086857 |
T |
|
| Q |
113 |
ttggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagtgttgaaccaccc |
212 |
Q |
| |
|
|||||||||| | ||| |||||||||| |||| ||| ||||||||||||||||| ||||| ||||| |||||||| |||||| |||| ||||| ||||| |
|
|
| T |
3086856 |
ttggcggctcctttattatgtcatctgagtttgagaaagaaatttcagatagaggtctaatcgcaagctggtgtccgcaagagcaagtattgaatcaccc |
3086757 |
T |
|
| Q |
213 |
ttcaatcggtggattcttgactcattg |
239 |
Q |
| |
|
|||||| |||||||||||||||||||| |
|
|
| T |
3086756 |
ttcaattggtggattcttgactcattg |
3086730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 4270 - 4514
Alignment:
| Q |
1 |
gtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccatttttgtggatcactaggc |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| || ||||| || |||||||||| | || | ||| | |||||| | ||||||||||||| ||||| |
|
|
| T |
4270 |
gtgaattttggaagcattacagttatgactccagatcaactgttagagtttgcttgggttttgaccaattgtaagaaatcctttttgtggatcattaggc |
4369 |
T |
|
| Q |
101 |
ctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagt |
200 |
Q |
| |
|
|||| ||||||||||||||||| | |||||||||||||| |||| ||||||||||||||||||||||||||| || || ||||||||||||||| |||| |
|
|
| T |
4370 |
ctgaccttgtcattggcggctcgtttattttgtcatctgagtttgagaatgaaatttcagatagaggcctaattgcgagctggtgtccacaagagcaagt |
4469 |
T |
|
| Q |
201 |
gttgaaccacccttcaatcggtggattcttgactcattgctgatg |
245 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
4470 |
actgaaccacccttcaattggtggattcttgactcattgcggatg |
4514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 49 - 245
Target Start/End: Complemental strand, 24103499 - 24103303
Alignment:
| Q |
49 |
tttgcttggggtctggctaatagcaagaaaccatttttgtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcga |
148 |
Q |
| |
|
|||||||||||| |||| ||||||||||| || ||||||||||| | ||||||||||||||||||||| |||||||| ||||||||||||| ||| | |
|
|
| T |
24103499 |
tttgcttggggtttggccaatagcaagaacccttttttgtggataattaggcctgatcttgtcattgggggctcagttgttttgtcatctgattttttta |
24103400 |
T |
|
| Q |
149 |
atgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagtgttgaaccacccttcaatcggtggattcttgactcattgctgatg |
245 |
Q |
| |
|
| ||| ||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| || ||||||||||||||||||||| |||| |
|
|
| T |
24103399 |
aagaagtttcagatagaggactaatagcaagttggtgtccacaagataaagtgttaaaccacccttcgattggtggattcttgactcattgcggatg |
24103303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 71 - 245
Target Start/End: Original strand, 27999753 - 27999927
Alignment:
| Q |
71 |
gcaagaaaccatttttgtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcct |
170 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||| ||| ||| |||||||||||||||||||| |
|
|
| T |
27999753 |
gcaagaaaccttttttgtggatcactaggcctaatcttgtcattggtggctcagtggttttgtcatctgagtttaggaaagaaatttcagatagaggcct |
27999852 |
T |
|
| Q |
171 |
aatagcaagttggtgtccacaagagaaagtgttgaaccacccttcaatcggtggattcttgactcattgctgatg |
245 |
Q |
| |
|
|||| ||| ||||||||||||||||||||| |||||||||||||||||| | || ||||||||||| ||| |||| |
|
|
| T |
27999853 |
aatatcaaattggtgtccacaagagaaagttttgaaccacccttcaatcagcgggttcttgactcactgcggatg |
27999927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 70 - 169
Target Start/End: Original strand, 3162 - 3261
Alignment:
| Q |
70 |
agcaagaaaccatttttgtggatcactaggcctgatcttgtcattggcggctca-gtgattttgtcatctgactttgcgaatgaaatttcagatagaggc |
168 |
Q |
| |
|
||||||||||| ||| ||||||||| |||| |||| |||||||||||||| ||| ||| ||||| || ||| |||| |||||||| ||||||||||||| |
|
|
| T |
3162 |
agcaagaaaccctttgtgtggatcattaggtctgaccttgtcattggcggatcatgtg-ctttgttatatgagtttgagaatgaaacttcagatagaggc |
3260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 239
Target Start/End: Original strand, 3428 - 3506
Alignment:
| Q |
160 |
gatagaggcctaatagcaagttggtgtccacaagagaaagtgttgaaccacccttcaatcggtggattcttgactcattg |
239 |
Q |
| |
|
|||| ||||||| | ||||| |||||||| ||||| |||||||||||||||||| | | ||||||||||| |||||||| |
|
|
| T |
3428 |
gatataggcctagtcgcaagatggtgtccgtaagagcaagtgttgaaccaccctt-agttggtggattcttaactcattg |
3506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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