View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10262_low_1 (Length: 538)

Name: NF10262_low_1
Description: NF10262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10262_low_1
NF10262_low_1
[»] chr7 (4 HSPs)
chr7 (122-246)||(6323034-6323159)
chr7 (439-534)||(6323184-6323279)
chr7 (126-304)||(6324120-6324295)
chr7 (256-342)||(28126367-28126453)
[»] chr4 (2 HSPs)
chr4 (256-342)||(52518952-52519038)
chr4 (181-283)||(3274451-3274554)
[»] scaffold0286 (1 HSPs)
scaffold0286 (188-305)||(15198-15316)
[»] chr6 (2 HSPs)
chr6 (188-305)||(2161790-2161908)
chr6 (256-342)||(5377070-5377156)
[»] chr2 (2 HSPs)
chr2 (184-245)||(20515991-20516053)
chr2 (302-350)||(31155477-31155525)
[»] chr1 (1 HSPs)
chr1 (256-342)||(17449502-17449588)
[»] chr3 (1 HSPs)
chr3 (277-338)||(6789833-6789894)


Alignment Details
Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 122 - 246
Target Start/End: Original strand, 6323034 - 6323159
Alignment:
Q  122 accattctagttagtatcatagagaactataaataagtcacttcattgcatctcatcttatcttttttcaatctatattcattcaatatgaatttctatg 221  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6323034 accattctagttagtatcatagagaactataaataaatcacttcattgcatctcatcttatcttttttcaatctatattcattcaatatgaatttctatg 6323133  T
Q  222 agtattctt-ccatgaatacacataa 246  Q
    ||||||||| ||||||||||||||||    
T  6323134 agtattcttcccatgaatacacataa 6323159  T

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Target: chr7; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 439 - 534
Target Start/End: Original strand, 6323184 - 6323279
Alignment:
Q  439 ttcacaaaattcaattctttttgtggagtgaattcagttcgatcatcactgttttcctcgcttgtgtttgtggcggcgatttgtctctgtgctcct 534  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  6323184 ttcacaaaattcaattctttttgtggagtgaattcagttcgatcatcactgttttcctcgcttgtgtttgtggcggcgatttgtctcagtgttcct 6323279  T

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Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 126 - 304
Target Start/End: Original strand, 6324120 - 6324295
Alignment:
Q  126 ttctagttagtatcatagagaactataaataagtcacttcattgcatctcatcttatcttttttcaatctatattcattcaatatgaatttctatgagta 225  Q
    ||||||||||||| |||||| |||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||  |||||||    
T  6324120 ttctagttagtattatagaggactataaatatgtcacttcattgtatcccattttatcttttttcaatctatattcattcaatatgaattttaatgagta 6324219  T
Q  226 ttcttc-catgaatacacataagccctccagcttgcttaaatctataatctttctccctttgactccgtgattctcaaca 304  Q
    |||||| ||| |||||||||| || ||| | |||||    || ||| |||||||||||||||||||| | ||||||||||    
T  6324220 ttcttctcataaatacacatatgctctctatcttgc----atatatgatctttctccctttgactccattattctcaaca 6324295  T

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Target: chr7; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 256 - 342
Target Start/End: Complemental strand, 28126453 - 28126367
Alignment:
Q  256 cttgcttaaatctataatctttctccctttgactccgtgattctcaacatggtatcagagtgatactcgagggaggaagatgaagat 342  Q
    |||||||| |||||| |||||||||||| ||| ||| ||||| ||||||||||||||||| ||||| | ||||||||||||||||||    
T  28126453 cttgcttacatctatgatctttctccctatgattccatgattttcaacatggtatcagagcgataccctagggaggaagatgaagat 28126367  T

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Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 256 - 342
Target Start/End: Original strand, 52518952 - 52519038
Alignment:
Q  256 cttgcttaaatctataatctttctccctttgactccgtgattctcaacatggtatcagagtgatactcgagggaggaagatgaagat 342  Q
    |||||||| |||||| |||||||||||| ||| ||| ||||| ||||||||||||||||| ||||| | ||||||||||||||||||    
T  52518952 cttgcttacatctatgatctttctccctatgattccatgattttcaacatggtatcagagcgataccctagggaggaagatgaagat 52519038  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 181 - 283
Target Start/End: Complemental strand, 3274554 - 3274451
Alignment:
Q  181 atcttttttcaatctatattcattcaatatgaatttctatgagtattcttc-catgaatacacataagccctccagcttgcttaaatctataatctttct 279  Q
    ||||||| |||||||||||| ||||||||| ||| | || ||||||||||| |||||||||||||| || ||| |  ||||||| || ||| || |||||    
T  3274554 atcttttatcaatctatatttattcaatataaatctatacgagtattcttcacatgaatacacatatgctctctattttgcttacatatatgatgtttct 3274455  T
Q  280 ccct 283  Q
    ||||    
T  3274454 ccct 3274451  T

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Target: scaffold0286 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 188 - 305
Target Start/End: Original strand, 15198 - 15316
Alignment:
Q  188 ttcaatctatattcattcaatatgaatttctatgagtattcttc-catgaatacacataagccctccagcttgcttaaatctataatctttctccctttg 286  Q
    ||||||||||| |||||||||||||||||||| ||||||||||| ||| |||||||||| || ||| | |||||||| | |||| |||||  ||||| ||    
T  15198 ttcaatctatactcattcaatatgaatttctacgagtattcttctcataaatacacatatgctctctatcttgcttacaactatgatcttcatccctatg 15297  T
Q  287 actccgtgattctcaacat 305  Q
    | ||| ||||| |||||||    
T  15298 attccatgattttcaacat 15316  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 188 - 305
Target Start/End: Complemental strand, 2161908 - 2161790
Alignment:
Q  188 ttcaatctatattcattcaatatgaatttctatgagtattcttc-catgaatacacataagccctccagcttgcttaaatctataatctttctccctttg 286  Q
    ||||||||||| |||||||||||||||||||| ||||||||||| ||| |||||||||| || ||| | |||||||| | |||| |||||  ||||| ||    
T  2161908 ttcaatctatactcattcaatatgaatttctacgagtattcttctcataaatacacatatgctctctatcttgcttacaactatgatcttcatccctatg 2161809  T
Q  287 actccgtgattctcaacat 305  Q
    | ||| ||||| |||||||    
T  2161808 attccatgattttcaacat 2161790  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 256 - 342
Target Start/End: Original strand, 5377070 - 5377156
Alignment:
Q  256 cttgcttaaatctataatctttctccctttgactccgtgattctcaacatggtatcagagtgatactcgagggaggaagatgaagat 342  Q
    |||||||| |||||| |  ||||||||| ||| ||| ||||||| ||||||||||||||| ||||| | ||||||||||||||||||    
T  5377070 cttgcttacatctatgacttttctccctatgattccatgattcttaacatggtatcagagcgataccctagggaggaagatgaagat 5377156  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 20516053 - 20515991
Alignment:
Q  184 ttttttcaatctatattcattcaatatgaatttctatgagtattcttc-catgaatacacata 245  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  20516053 tttttgcaatctatattcattcaatatgaatttctatgagtattcttctcatgattacacata 20515991  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 350
Target Start/End: Complemental strand, 31155525 - 31155477
Alignment:
Q  302 acatggtatcagagtgatactcgagggaggaagatgaagattgtgcttc 350  Q
    |||||||||||||| ||||| ||||||| | ||||||||| ||||||||    
T  31155525 acatggtatcagagcgatacccgagggatgtagatgaagactgtgcttc 31155477  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 256 - 342
Target Start/End: Original strand, 17449502 - 17449588
Alignment:
Q  256 cttgcttaaatctataatctttctccctttgactccgtgattctcaacatggtatcagagtgatactcgagggaggaagatgaagat 342  Q
    |||||||| |||||| | |||||||||| ||| ||| ||||||| ||||||||||||||| ||||| | ||| ||||||||||||||    
T  17449502 cttgcttacatctatgacctttctccctatgattccatgattcttaacatggtatcagagcgataccctaggaaggaagatgaagat 17449588  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 277 - 338
Target Start/End: Original strand, 6789833 - 6789894
Alignment:
Q  277 tctccctttgactccgtgattctcaacatggtatcagagtgatactcgagggaggaagatga 338  Q
    ||||||| ||| ||| ||||||| ||||||||||||||| ||||| | ||||||||||||||    
T  6789833 tctccctatgattccatgattcttaacatggtatcagagcgataccctagggaggaagatga 6789894  T

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