View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10262_low_19 (Length: 219)
Name: NF10262_low_19
Description: NF10262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10262_low_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 22 - 191
Target Start/End: Original strand, 31867646 - 31867815
Alignment:
| Q |
22 |
atacaacaaataaattgaccacgacaaggatcacgaaaggattgaaagcgaaaatttgaaaaccgtgactacactaccgtttgtgatttcagccaaggaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||| |||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
31867646 |
atacaacaaataaattgaccacgacaaggatcacaaaaggattgaaagcgaaactctgaaaactgtgactccaccaccgtttgtgatttcagccaaggaa |
31867745 |
T |
|
| Q |
122 |
taaattttgatttgtcgaatgcaattttgcgagctcttcgctatgaaatctaagcaaattatatacctcg |
191 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31867746 |
tatattttgatttgtcgaatgcaattttgcgagctcttcgctatgaaatctaagcaaattatatacctcg |
31867815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University