View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10262_low_20 (Length: 206)
Name: NF10262_low_20
Description: NF10262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10262_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 9e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 14 - 156
Target Start/End: Original strand, 37792252 - 37792394
Alignment:
| Q |
14 |
cagagatttgacccaatggaagcttggttacaatatcagacttctcatggtaacttattcggtatgctcatacaactttcccaacactcccttagtccaa |
113 |
Q |
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| T |
37792252 |
cagagatttgacccaatggaagcttggttacaatatcagacttctcatggtagcttattcggtatgctcatacaactttaccaacactcccttagtccaa |
37792351 |
T |
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| Q |
114 |
aattgaatgatcaagttgatagtatcacacatattaatgtaca |
156 |
Q |
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| T |
37792352 |
aattgaatgatcaatttgattgtatcacacatattaatgtaca |
37792394 |
T |
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Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 37801944 - 37802014
Alignment:
| Q |
14 |
cagagatttgacccaatggaagcttggttacaatatcagacttctcatggtaacttattcggtatgctcat |
84 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37801944 |
cagagatttgacccaatggaagcttggttacaatatcagacttctcatggtagcttattcggtatgctcat |
37802014 |
T |
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