View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10262_low_3 (Length: 456)
Name: NF10262_low_3
Description: NF10262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10262_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 46 - 443
Target Start/End: Original strand, 33381085 - 33381482
Alignment:
| Q |
46 |
tatcttttattacgcttatattctccactctcttgccatgtaataatgaaaaacttaaatgtaagctatatgtgtgtgtatatgttccacgtatgcttta |
145 |
Q |
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| T |
33381085 |
tatcttttattacgcttatattctccactctcttgccatgtaataatgaaaaacttaaatgtaagctatatgtgtgtgtatatgttccacgtatgcttta |
33381184 |
T |
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| Q |
146 |
tcatcggaaattcgaccattgctcgcaaaggatatcaatattttcacatgtcttgtctgttaagaaaaaatgaattgattaaaatagctaataccttgta |
245 |
Q |
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| T |
33381185 |
tcatcggaaattcgaccattgctcgcaaaggatatcaatattttcacatgtcttgtctgttaagaaaaaatgaattgattaaaatagctaataccttgta |
33381284 |
T |
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| Q |
246 |
ctttagatagggaaaatggatttgtctgctataaatgtttcactctagaatagatattttatataccaataattgaacttcttttccctgtcggaaatat |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
33381285 |
ctttagatagggaaaatggatttgtctgctataaatgtttcactctagaatagatattttatataccaataattgaactttgtctccctgtcggaaatat |
33381384 |
T |
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| Q |
346 |
taatagaaaaaagatattggataattaagaaagatagaagaaagttgttataccatggtaaaatatcactatttttaatgcaaattttggatggacct |
443 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33381385 |
taatagaaaaaagatcttggataattaagaaagatagaagaaagttgttataccatggtaaaatatcactatttttaatgcaaattttggatggacct |
33381482 |
T |
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