View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10262_low_6 (Length: 318)
Name: NF10262_low_6
Description: NF10262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10262_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 42 - 299
Target Start/End: Complemental strand, 6698255 - 6697999
Alignment:
| Q |
42 |
aaaaggttgaggaagcaagattgattttggtttgcagaagagataaaatgtattgtaaaaagagaaaacaattaatttgagttgtgtcacggtgcatatt |
141 |
Q |
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| T |
6698255 |
aaaaggttgaggaagcaagattaattttggtttgca-aagagataaaatgtattgtaaaaagagaaaacaattaatttgagttgtgtcacgatgcatatt |
6698157 |
T |
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| Q |
142 |
aactttgaaaacagtagtaaagccacctccaatgaattttgttttcctatgcatagcattccttaagcagtgtgcaatgcattcatgttattgaaactga |
241 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6698156 |
aactttgaaaacagtagtaaagccacctccaatgagttttgttttcctatgcatagcattccttaagcagtgtgcaaggcattcatgttattgaaactga |
6698057 |
T |
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| Q |
242 |
acttagagtgatgattaggaaaaacactcaagagaatttaatgcttgcatgatggagg |
299 |
Q |
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| T |
6698056 |
acttagagcgatgattatgaaaagcactcaagagaatttaatgcttgcatgatggagg |
6697999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 9045239 - 9045187
Alignment:
| Q |
247 |
gagtgatgattaggaaaaacactcaagagaatttaatgcttgcatgatggagg |
299 |
Q |
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| T |
9045239 |
gagtgatgattaggaaaagcactaaggagaatttaatgttttgatgatggagg |
9045187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 239 - 299
Target Start/End: Complemental strand, 31442641 - 31442581
Alignment:
| Q |
239 |
tgaacttagagtgatgattaggaaaaacactcaagagaatttaatgcttgcatgatggagg |
299 |
Q |
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| T |
31442641 |
tgaacttagagtgatgattaggaaaagcacttaggagaatttaatgcttggatgatggagg |
31442581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 245 - 299
Target Start/End: Original strand, 10427600 - 10427654
Alignment:
| Q |
245 |
tagagtgatgattaggaaaaacactcaagagaatttaatgcttgcatgatggagg |
299 |
Q |
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| T |
10427600 |
tagagtgatgattaggaaaaacactaagaagaatttaatgcttggatgatggagg |
10427654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 299
Target Start/End: Complemental strand, 9199865 - 9199814
Alignment:
| Q |
248 |
agtgatgattaggaaaaacactcaagagaatttaatgcttgcatgatggagg |
299 |
Q |
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| T |
9199865 |
agtgatgattaggaaaagaactaaggagaatttaatgcttggatgatggagg |
9199814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 296
Target Start/End: Complemental strand, 9201404 - 9201356
Alignment:
| Q |
248 |
agtgatgattaggaaaaacactcaagagaatttaatgcttgcatgatgg |
296 |
Q |
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| T |
9201404 |
agtgatgattaggaaaagaactaaggagaatttaatgcttggatgatgg |
9201356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 251 - 299
Target Start/End: Complemental strand, 26981147 - 26981099
Alignment:
| Q |
251 |
gatgattaggaaaaacactcaagagaatttaatgcttgcatgatggagg |
299 |
Q |
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||||||||||||||||||| | |||||||||||||||| |||||||||| |
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| T |
26981147 |
gatgattaggaaaaacactaaggagaatttaatgcttggatgatggagg |
26981099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 299
Target Start/End: Complemental strand, 5334388 - 5334337
Alignment:
| Q |
248 |
agtgatgattaggaaaaacactcaagagaatttaatgcttgcatgatggagg |
299 |
Q |
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||||||||||||||||| || | |||||||||||||||||| |||||||||| |
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| T |
5334388 |
agtgatgattaggaaaagcattaaagagaatttaatgcttggatgatggagg |
5334337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 299
Target Start/End: Original strand, 20077288 - 20077348
Alignment:
| Q |
239 |
tgaacttagagtgatgattaggaaaaacactcaagagaatttaatgcttgcatgatggagg |
299 |
Q |
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||||| || ||||||||||||||||| |||| | | |||||||||||||| |||||||||| |
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| T |
20077288 |
tgaacctaaagtgatgattaggaaaagcactaaggtgaatttaatgcttggatgatggagg |
20077348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 299
Target Start/End: Complemental strand, 4407895 - 4407841
Alignment:
| Q |
245 |
tagagtgatgattaggaaaaacactcaagagaatttaatgcttgcatgatggagg |
299 |
Q |
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||||| ||||||||||||||||||| | |||||||||||| ||| ||||||||| |
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| T |
4407895 |
tagagcgatgattaggaaaaacactaaggagaatttaatgtttgggtgatggagg |
4407841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 299
Target Start/End: Complemental strand, 11582698 - 11582638
Alignment:
| Q |
239 |
tgaacttagagtgatgattaggaaaaacactcaagagaatttaatgcttgcatgatggagg |
299 |
Q |
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||||| ||||||||| ||||||||||||||| | ||||||||||| ||| |||| ||||| |
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| T |
11582698 |
tgaacctagagtgattattaggaaaaacactaagaagaatttaatgtttggatgacggagg |
11582638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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