View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10262_low_8 (Length: 284)
Name: NF10262_low_8
Description: NF10262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10262_low_8 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 267
Target Start/End: Complemental strand, 6688218 - 6687977
Alignment:
| Q |
19 |
tttggtgagcttgttaaatgtagtttcttgtaactttgtaatgactatttgattctacattaacaggatgttctcttcatcggatataggtcattgttcg |
118 |
Q |
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| T |
6688218 |
tttggtgagcttgttaaatgtagtttcttgtaactttgtaatgactatttgattctagattaaagggatgttctcttcaccggatataggtcattgttcg |
6688119 |
T |
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| Q |
119 |
accgaactgagaaagaaatattagtgtggtgttcctctactcttttttctttatcttgttttgnnnnnnnnnnnngttatgattgtgattttgctttcca |
218 |
Q |
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| T |
6688118 |
accgaactgagaaacaaacattagtgtggtgttcctctactcttttttctttatcttgtttt-------ttttttgttatgtttgtgattttgctttcca |
6688026 |
T |
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| Q |
219 |
cttggttgttagattggatctagatatgttgttgtttgatataatttag |
267 |
Q |
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| T |
6688025 |
cttggttgttagattggatctagatatgttgttgtttgatataatttag |
6687977 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 5739935 - 5739882
Alignment:
| Q |
201 |
ttgtgattttgctttccacttggttgttagattggatctagatatgttgttgtt |
254 |
Q |
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| T |
5739935 |
ttgtggttttgctttacacttggttgctagattagatttagatatgttgttgtt |
5739882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 50432588 - 50432543
Alignment:
| Q |
198 |
tgattgtgattttgctttccacttggttgttagattggatctagat |
243 |
Q |
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| T |
50432588 |
tgattgtggttttgctttccacttcgttgctagattggatctagat |
50432543 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 3786187 - 3786242
Alignment:
| Q |
199 |
gattgtgattttgctttccacttggttgttagattggatctagatatgttgttgtt |
254 |
Q |
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| T |
3786187 |
gattgtaattttgttttacacttggttgctatattagatctagatatgttgttgtt |
3786242 |
T |
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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 490261 - 490208
Alignment:
| Q |
201 |
ttgtgattttgctttccacttggttgttagattggatctagatatgttgttgtt |
254 |
Q |
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| T |
490261 |
ttgtggttttgctatacacttggttgctagattagatctagatatattgttgtt |
490208 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 42261426 - 42261373
Alignment:
| Q |
201 |
ttgtgattttgctttccacttggttgttagattggatctagatatgttgttgtt |
254 |
Q |
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| T |
42261426 |
ttgtggttttgctatacacttggttgctagattagatctagatatattgttgtt |
42261373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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