View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10263_high_2 (Length: 517)
Name: NF10263_high_2
Description: NF10263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10263_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Original strand, 13041011 - 13041507
Alignment:
| Q |
1 |
agatgacctgatcttggaaaatatttacgtgcgaaatatgacagtatttaagctacaacctcaagtttgttaattgattgctttatatttatcactagac |
100 |
Q |
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| T |
13041011 |
agatgacctgatcttggaaaatatttacgtgcgaaatatgacagtatttaagctacaacctcaagtttgttaaatgattgctttatatttaccactagac |
13041110 |
T |
|
| Q |
101 |
cacaattaaatttcttttatgcatcacggtttaaaaatatgttacattattgtccattcacgttatggttcctttattatgtttcaggaatgcttcgacg |
200 |
Q |
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| T |
13041111 |
cacaattaaatttcttttatgcatcacggtttaaaaatatgttacattattgtccattcacgttatggttcctttattatgtttcaggaatgcttcgacg |
13041210 |
T |
|
| Q |
201 |
tcctgctgaggttcttgggccagtccatgttgctacacgaatgcgacctgtcgatgctttgtgggctgtggcttatggtggcccattgtctttgcttccc |
300 |
Q |
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| T |
13041211 |
tcctgctgaggttcttgggccagtccatgttgctacacgaatgcgacctgtcgatgctttgtgggctgtggcttatggtggcccattgtctttgcttccc |
13041310 |
T |
|
| Q |
301 |
ttagcaataagtaatatacaagaggatactcttgaaccacatcaagggaatttttctgtgtcagtggcgactacatctcttgctgctccaatatttcgaa |
400 |
Q |
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| T |
13041311 |
ttagcaataagtaatatacaagaggatactcttgaaccacatcaagggaatttttctgtgtcagtggcgactacatctcttgctgctccaatatttcgaa |
13041410 |
T |
|
| Q |
401 |
ttatatccacagctattcaatatccgaagaacagtgaggagttgggtcgttgtagagggcctgaagttatttctaaggttctaaattatcttctcca |
497 |
Q |
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| T |
13041411 |
ttatatccacagctattcaatatccgaagaacagtgaggagttgggtcgttgtagagggcctgaagttatttctaaggttctaaattatcttctcca |
13041507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 163 - 497
Target Start/End: Complemental strand, 28376951 - 28376617
Alignment:
| Q |
163 |
ttatggttcctttattatgtttcaggaatgcttcgacgtcctgctgaggttcttgggccagtccatgttgctacacgaatgcgacctgtcgatgctttgt |
262 |
Q |
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||||||| |||| |||||| ||||||| ||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||| | |||||||||| |
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| T |
28376951 |
ttatggtcccttcattatgattcaggagtgcttcgacgtccagctgaggttcttgggcaagtccatgttgctacaagaatgcgaccaggggatgctttgt |
28376852 |
T |
|
| Q |
263 |
gggctgtggcttatggtggcccattgtctttgcttcccttagcaataagtaatatacaagaggatactcttgaaccacatcaagggaatttttctgtgtc |
362 |
Q |
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|||| |||| ||||| || || ||||||||||||||| | ||||||| |||||| | || || ||||| ||||||| ||||||||||| ||| | || |
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| T |
28376851 |
gggcattggcctatggcggtcccttgtctttgcttcccgtgacaataagcaatatagacgaagacactctggaaccactgcaagggaatttatctctttc |
28376752 |
T |
|
| Q |
363 |
agtggcgactacatctcttgctgctccaatatttcgaattatatccacagctattcaatatccgaagaacagtgaggagttgggtcgttgtagagggcct |
462 |
Q |
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|| || ||||||||||| || ||||||||| |||||||||||| ||||||||| |||| | ||||| ||| ||||| |||| | ||||||||| |
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| T |
28376751 |
ttcagctaccacatctcttgcggccccaatatttagaattatatccattgctattcaacatccaaggaacaatgaagagttatctcgtggcagagggcct |
28376652 |
T |
|
| Q |
463 |
gaagttatttctaaggttctaaattatcttctcca |
497 |
Q |
| |
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|| ||| | || || || | |||||||||||||| |
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| T |
28376651 |
gaggttctgtcaaaaattttgaattatcttctcca |
28376617 |
T |
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