View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10263_high_3 (Length: 269)

Name: NF10263_high_3
Description: NF10263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10263_high_3
NF10263_high_3
[»] chr2 (14 HSPs)
chr2 (1-267)||(39379617-39379882)
chr2 (21-207)||(39386437-39386626)
chr2 (59-196)||(39139771-39139908)
chr2 (21-156)||(39179534-39179673)
chr2 (61-163)||(39419997-39420100)
chr2 (18-150)||(39156683-39156817)
chr2 (18-112)||(39188437-39188534)
chr2 (98-207)||(39204564-39204674)
chr2 (67-202)||(39452040-39452177)
chr2 (56-163)||(39224535-39224643)
chr2 (18-111)||(39145025-39145119)
chr2 (59-105)||(39372054-39372100)
chr2 (209-249)||(39412244-39412283)
chr2 (59-201)||(39471627-39471770)
[»] chr5 (1 HSPs)
chr5 (56-207)||(33563134-33563292)
[»] chr7 (1 HSPs)
chr7 (94-202)||(19810024-19810134)


Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 39379617 - 39379882
Alignment:
Q  1 atctaccaattaacaacaacaaaaatctaagcagattggacagaacattcaaaaattgtcaaaccatttagaaaatagaaaagatacataaatagagaga 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39379617 atctaccaattaacaacaacaaaaatctaagcagatcggacagaacattcaaaaattgtcaaaccatttagaaaatagaaaagatacataaatagagaga 39379716  T
Q  101 taaatatgaagtttatttcatattccaagattaacaccaagacgtcaattctctctaaacaaaggtgagaactgtgggggaaacaaaattaagccaatta 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39379717 taaatatgaagtttatctcatattccaagattaacaccaagacgtcaattctctctaaacaaaggtgagaactgtgggggaaacaaaattaagccaatta 39379816  T
Q  201 catatcaagagttgtcctattttcttaaaaggattcatttcagccattttctttaactgatcccttt 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  39379817 catatcaagagttgtcctattttcttaaaaggattcatttcagcca-tttctttaacttatcccttt 39379882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 207
Target Start/End: Original strand, 39386437 - 39386626
Alignment:
Q  21 aaaaatctaagcagattggacagaacatt-caaaaattgtcaaaccatttagaaaatagaaaagatacataaatagagagataaatat-gaagtttattt 118  Q
    ||||| |||||||||||| || ||| ||| ||||| ||||||||||||||||||| ||||| |||||||||||  ||||||||||| | ||||| || ||    
T  39386437 aaaaaactaagcagattgaactgaatatttcaaaatttgtcaaaccatttagaaactagaagagatacataaaaggagagataaatttcgaagtctaatt 39386536  T
Q  119 catattccaag-attaacaccaagacgtcaattctctctaaacaaaggtgagaactgtgggggaaacaaaattaagccaattacatatca 207  Q
    ||| ||| ||| ||| | | ||||| ||  ||| ||| | |||||| | |||| |||| ||||||||||||| |||||||||||| ||||    
T  39386537 cattttcaaagcattgaaagcaagatgttgattatctattaacaaacgcgagatctgttggggaaacaaaatcaagccaattacaaatca 39386626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 196
Target Start/End: Complemental strand, 39139908 - 39139771
Alignment:
Q  59 tcaaaccatttagaaaatagaaaagatacataaatagagagataaatatgaagtttatttcatattccaag-attaacaccaagacgtcaattctctcta 157  Q
    |||||||||||| || || ||| |||||||| ||  ||||||| ||| |||||| |||||||| ||||| | ||||||||||||| ||||||| |||||     
T  39139908 tcaaaccatttataacatggaagagatacatgaa--gagagatgaatttgaagtctatttcattttccacgcattaacaccaagatgtcaattttctctt 39139811  T
Q  158 aacaaaggtgagaactg-tgggggaaacaaaattaagcca 196  Q
    |||||| |  ||||||| ||||||||||||||| ||||||    
T  39139810 aacaaatgatagaactgttgggggaaacaaaatgaagcca 39139771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 156
Target Start/End: Complemental strand, 39179673 - 39179534
Alignment:
Q  21 aaaaatctaagcagattggacagaacatt-caaaaattgtcaaaccatttagaaaatagaaaagatacat--aaatagagagataaatatgaagtttatt 117  Q
    ||||| |||||||||||| || ||||||| || || || |||||||||||||||||||||| ||||||||  ||| |||||||||||| | |||| || |    
T  39179673 aaaaaactaagcagattgaactgaacatttcacaatttatcaaaccatttagaaaatagaagagatacataaaaagagagagataaatttcaagtctaat 39179574  T
Q  118 tcatattccaag-attaacaccaagacgtcaattctctct 156  Q
    |||| ||| ||| ||||| ||||||| ||||||| |||||    
T  39179573 tcattttcaaagcattaaaaccaagatgtcaattttctct 39179534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 163
Target Start/End: Original strand, 39419997 - 39420100
Alignment:
Q  61 aaaccatttagaaaatagaaaagatacataaatagagagataaatatgaagtttatttcatattccaag-attaacaccaagacgtcaattctctctaaa 159  Q
    |||||||||||||||| ||| |||| | |||| |||||||||||| | |||| |||||||| || |||| |||||||| |||| ||||||| ||||| ||    
T  39419997 aaaccatttagaaaatggaagagatgcgtaaaaagagagataaatttcaagtatatttcattttacaagcattaacacaaagatgtcaattttctcttaa 39420096  T
Q  160 caaa 163  Q
    ||||    
T  39420097 caaa 39420100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 39156817 - 39156683
Alignment:
Q  18 aacaaaaatctaagcagattggacagaacattcaaaaattgtcaaaccatttagaaaatagaaaagatacat-aaatagagagataaatatgaagtttat 116  Q
    ||||||||||||||| |||||||| ||| |||||||  | |||| |||||||||||||| ||| ||| |||| ||| |||||||| | | | || | |||    
T  39156817 aacaaaaatctaagctgattggactgaatattcaaacttcgtcataccatttagaaaatggaagagacacataaaaaagagagatcagtttcaattctat 39156718  T
Q  117 ttcatattccaag-attaacaccaagacgtcaatt 150  Q
    ||||| ||||||| ||||||||||||  |||||||    
T  39156717 ttcattttccaagcattaacaccaagttgtcaatt 39156683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 39188437 - 39188534
Alignment:
Q  18 aacaaaaatctaagcagattggacagaaca-ttcaaaaattgtcaaaccatttagaaaatagaaaagatac--ataaatagagagataaatatgaagt 112  Q
    ||||||||||| |||||||||||| ||| | ||||||| ||||||||||||||  ||||||||| | ||||  ||||| |||||||||||| ||||||    
T  39188437 aacaaaaatcttagcagattggactgaatagttcaaaagttgtcaaaccatttgaaaaatagaagaaatacatataaaaagagagataaatttgaagt 39188534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 207
Target Start/End: Original strand, 39204564 - 39204674
Alignment:
Q  98 agataaatatgaagtttatttcatattccaag-attaacaccaagacgtcaattctctctaaacaaaggtgagaactgtgggggaaacaaaattaagcca 196  Q
    |||||||| | |||| ||||||||  || ||| ||||| || |||| ||||||| ||||  |||||| |||||| |||| ||||||||||||| ||||||    
T  39204564 agataaatttcaagtctatttcattctcaaagcattaaaacgaagatgtcaattttctcgtaacaaatgtgagatctgttggggaaacaaaatgaagcca 39204663  T
Q  197 attacatatca 207  Q
    |||||||||||    
T  39204664 attacatatca 39204674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 202
Target Start/End: Complemental strand, 39452177 - 39452040
Alignment:
Q  67 tttagaaaatagaaaagatacataaatagagagataaatatgaagtttatttcatattccaag-attaacaccaagacgtcaattctctctaaacaaagg 165  Q
    |||||||||| ||| |||| |||||| ||||||||| || | ||||  ||||||| ||||||| |||||||| |||| ||||||| || || |||||| |    
T  39452177 tttagaaaatggaagagatgcataaaaagagagatacatttcaagtcaatttcattttccaagcattaacactaagatgtcaattttcccttaacaaatg 39452078  T
Q  166 tgagaactgt-gggggaaacaaaattaagccaattaca 202  Q
     || ||| || |||||||||||||| || | |||||||    
T  39452077 agacaacagttgggggaaacaaaatgaatcgaattaca 39452040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 163
Target Start/End: Complemental strand, 39224643 - 39224535
Alignment:
Q  56 ttgtcaaaccatttagaaaatagaaaagatacataaatagagagataaatatgaagtttatttcatattccaag-attaacaccaagacgtcaattctct 154  Q
    ||||||||||||||||||||||| | |||||||  || |||||||||||| | || | | |||||| ||| ||| ||||| ||||||  ||||||| |||    
T  39224643 ttgtcaaaccatttagaaaatagtatagatacaagaaaagagagataaatttcaattctgtttcattttcaaagcattaaaaccaagctgtcaattttct 39224544  T
Q  155 ctaaacaaa 163  Q
    || ||||||    
T  39224543 cttaacaaa 39224535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 39145119 - 39145025
Alignment:
Q  18 aacaaaaatctaagcagattggacagaaca-ttcaaaaattgtcaaaccatttagaaaatagaaaagatacataaatagagagataaatatgaag 111  Q
    |||||||| || |||||||||||| ||| | ||||||| ||||||||||||||  ||||||||| | ||||||| | | ||||||| || |||||    
T  39145119 aacaaaaagcttagcagattggactgaatagttcaaaagttgtcaaaccatttgaaaaatagaagaaatacatataaaaagagatatatttgaag 39145025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 39372100 - 39372054
Alignment:
Q  59 tcaaaccatttagaaaatagaaaagatacataaatagagagataaat 105  Q
    |||||||||||| ||||||||| |||||||||||  |||||||||||    
T  39372100 tcaaaccatttataaaatagaagagatacataaaaggagagataaat 39372054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 39412244 - 39412283
Alignment:
Q  209 gagttgtcctattttcttaaaaggattcatttcagccattt 249  Q
    |||||||||||||| ||||||||||||||||||| ||||||    
T  39412244 gagttgtcctattt-cttaaaaggattcatttcacccattt 39412283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 201
Target Start/End: Original strand, 39471627 - 39471770
Alignment:
Q  59 tcaaaccatttagaaaatagaaaagatacataaatagagagataaatatgaagtttatttcatattccaag-attaacaccaagacgtcaattctctcta 157  Q
    ||||||||||| ||||||  |  ||||||||||| |||||| ||||  | | || |||||||| ||||||  ||||||||||||| ||||||| |||||     
T  39471627 tcaaaccatttcgaaaatgcatgagatacataaa-agagaggtaaaattcatgtctatttcattttccaatcattaacaccaagatgtcaattttctctt 39471725  T
Q  158 aacaaaggtgagaactg-tgggggaaacaaaattaagccaattac 201  Q
    |||||| |  ||||||| | | ||| ||||||| |||||||||||    
T  39471726 aacaaatgatagaactgttagcggacacaaaataaagccaattac 39471770  T

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Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 56 - 207
Target Start/End: Complemental strand, 33563292 - 33563134
Alignment:
Q  56 ttgtcaaaccatttagaaaatagaaaagatacataaatagagagataaatatgaagtttatttcatattc-------caagattaacaccaagacgtcaa 148  Q
    ||||||||||||||||||||||||| |||||||||||  ||||||||||| | |||| |||||||| |||        ||| |||| | ||||| |||||    
T  33563292 ttgtcaaaccatttagaaaatagaagagatacataaaatgagagataaatttcaagtctatttcattttcaaagcattaagtttaaaatcaagatgtcaa 33563193  T
Q  149 ttctctctaaacaaaggtgagaactgtgggggaaacaaaattaagccaattacatatca 207  Q
    || ||||| |||||| |||||| |||| || |||||||||| |||||||||||||||||    
T  33563192 ttttctcttaacaaatgtgagatctgttggtgaaacaaaatgaagccaattacatatca 33563134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 202
Target Start/End: Complemental strand, 19810134 - 19810024
Alignment:
Q  94 agagagataaatatgaagtttatttcatattccaag-attaacaccaagacgtcaattctctctaaacaaaggtgagaactg-tgggggaaacaaaatta 191  Q
    |||||||||||| |||||| ||||| || ||||||| |||||||| | || ||||||| ||||| |||||| |  ||||||| | ||||||||||||| |    
T  19810134 agagagataaatttgaagtctatttgattttccaagcattaacactatgatgtcaattttctcttaacaaatgatagaactgttaggggaaacaaaatga 19810035  T
Q  192 agccaattaca 202  Q
    |||||| ||||    
T  19810034 agccaactaca 19810024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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