View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10263_low_1 (Length: 685)

Name: NF10263_low_1
Description: NF10263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10263_low_1
NF10263_low_1
[»] chr4 (25 HSPs)
chr4 (19-676)||(6613939-6614596)
chr4 (277-664)||(23158313-23158700)
chr4 (277-640)||(36279366-36279729)
chr4 (277-669)||(15649230-15649622)
chr4 (277-588)||(18116545-18116857)
chr4 (277-664)||(51872357-51872744)
chr4 (278-666)||(17838698-17839086)
chr4 (277-584)||(22340331-22340638)
chr4 (277-665)||(8110589-8110977)
chr4 (276-624)||(15705722-15706070)
chr4 (277-584)||(29123602-29123908)
chr4 (277-624)||(4303365-4303712)
chr4 (528-666)||(4723310-4723448)
chr4 (277-630)||(12915497-12915850)
chr4 (277-640)||(29192478-29192841)
chr4 (277-601)||(50693917-50694241)
chr4 (277-418)||(3621420-3621561)
chr4 (23-267)||(28858060-28858304)
chr4 (277-601)||(36950936-36951260)
chr4 (441-632)||(12290496-12290687)
chr4 (374-601)||(34994461-34994688)
chr4 (482-667)||(3621238-3621423)
chr4 (277-601)||(17469287-17469611)
chr4 (383-589)||(24059390-24059596)
chr4 (450-631)||(25134983-25135164)
[»] chr2 (14 HSPs)
chr2 (277-669)||(27914764-27915156)
chr2 (281-676)||(23384516-23384898)
chr2 (277-670)||(21963074-21963467)
chr2 (277-660)||(32349550-32349933)
chr2 (277-523)||(30275703-30275948)
chr2 (277-584)||(38938224-38938531)
chr2 (533-664)||(30274400-30274532)
chr2 (375-661)||(33937038-33937322)
chr2 (360-661)||(22298587-22298888)
chr2 (375-661)||(1258135-1258422)
chr2 (383-489)||(20007345-20007451)
chr2 (235-279)||(27069901-27069945)
chr2 (236-279)||(20468716-20468759)
chr2 (101-177)||(5603768-5603844)
[»] chr7 (25 HSPs)
chr7 (277-670)||(9403288-9403681)
chr7 (278-669)||(37075754-37076145)
chr7 (277-669)||(34981514-34981906)
chr7 (277-664)||(12121258-12121645)
chr7 (277-662)||(24819371-24819756)
chr7 (277-661)||(36575545-36575929)
chr7 (277-665)||(40891927-40892315)
chr7 (277-582)||(586538-586843)
chr7 (486-676)||(3483065-3483256)
chr7 (277-664)||(20705655-20706042)
chr7 (277-664)||(20873699-20874086)
chr7 (438-665)||(21607909-21608136)
chr7 (441-662)||(31252892-31253113)
chr7 (318-625)||(27278313-27278620)
chr7 (277-661)||(27868585-27868959)
chr7 (375-589)||(18815654-18815868)
chr7 (375-475)||(27990212-27990312)
chr7 (374-606)||(45649421-45649653)
chr7 (374-601)||(47553024-47553251)
chr7 (397-489)||(8457467-8457559)
chr7 (20-276)||(8864799-8865055)
chr7 (53-184)||(17245134-17245265)
chr7 (29-164)||(23160523-23160657)
chr7 (277-594)||(22865911-22866228)
chr7 (450-589)||(5196380-5196519)
[»] chr5 (12 HSPs)
chr5 (277-669)||(10462300-10462692)
chr5 (277-670)||(5825132-5825525)
chr5 (277-669)||(6678739-6679131)
chr5 (277-584)||(27891450-27891757)
chr5 (277-579)||(11265782-11266084)
chr5 (277-655)||(31962835-31963213)
chr5 (404-606)||(38931499-38931701)
chr5 (277-584)||(29150057-29150364)
chr5 (590-666)||(3998524-3998600)
chr5 (404-594)||(8895126-8895316)
chr5 (235-279)||(42762819-42762863)
chr5 (530-601)||(29322528-29322599)
[»] chr3 (22 HSPs)
chr3 (281-666)||(17153974-17154360)
chr3 (278-669)||(53152249-53152640)
chr3 (277-665)||(23571784-23572172)
chr3 (277-636)||(3514384-3514743)
chr3 (277-661)||(9818733-9819119)
chr3 (441-670)||(32945557-32945786)
chr3 (277-665)||(48547225-48547613)
chr3 (276-666)||(42462390-42462780)
chr3 (277-663)||(23602936-23603322)
chr3 (277-630)||(8594963-8595316)
chr3 (541-666)||(44879665-44879790)
chr3 (464-662)||(9246703-9246901)
chr3 (375-577)||(30737247-30737449)
chr3 (460-588)||(8542253-8542381)
chr3 (296-630)||(42459474-42459807)
chr3 (277-618)||(10753781-10754122)
chr3 (277-661)||(39632995-39633379)
chr3 (277-601)||(16663711-16664035)
chr3 (374-601)||(52196022-52196249)
chr3 (53-184)||(8563350-8563481)
chr3 (542-619)||(52962633-52962710)
chr3 (449-489)||(28393365-28393405)
[»] chr8 (8 HSPs)
chr8 (277-669)||(2959753-2960145)
chr8 (277-666)||(26077889-26078278)
chr8 (329-665)||(31423430-31423766)
chr8 (277-624)||(26390405-26390751)
chr8 (391-640)||(29529870-29530118)
chr8 (374-601)||(10801940-10802168)
chr8 (53-184)||(29338549-29338680)
chr8 (276-323)||(29532370-29532417)
[»] chr6 (12 HSPs)
chr6 (277-664)||(18295559-18295946)
chr6 (281-666)||(2893907-2894292)
chr6 (277-667)||(28605050-28605440)
chr6 (377-584)||(667016-667222)
chr6 (374-601)||(5391777-5392004)
chr6 (450-589)||(17227675-17227814)
chr6 (450-584)||(7218686-7218820)
chr6 (390-588)||(9759779-9759977)
chr6 (450-601)||(14223505-14223656)
chr6 (277-327)||(667284-667334)
chr6 (277-336)||(7218513-7218572)
chr6 (47-174)||(26904862-26904989)
[»] chr1 (14 HSPs)
chr1 (277-588)||(41342971-41343282)
chr1 (277-664)||(10003603-10003990)
chr1 (277-640)||(27029648-27030011)
chr1 (277-665)||(5556938-5557326)
chr1 (277-624)||(49369479-49369826)
chr1 (441-666)||(44753748-44753973)
chr1 (473-664)||(48759777-48759968)
chr1 (450-661)||(37666028-37666239)
chr1 (375-584)||(45757435-45757644)
chr1 (383-588)||(40392461-40392658)
chr1 (297-474)||(26995826-26996002)
chr1 (551-664)||(32152387-32152500)
chr1 (536-589)||(26995712-26995765)
chr1 (125-166)||(41329679-41329720)
[»] scaffold0041 (1 HSPs)
scaffold0041 (277-665)||(73969-74357)
[»] scaffold0032 (1 HSPs)
scaffold0032 (277-666)||(58559-58948)
[»] scaffold0003 (2 HSPs)
scaffold0003 (450-584)||(225060-225194)
scaffold0003 (277-336)||(224889-224948)
[»] scaffold0252 (1 HSPs)
scaffold0252 (53-184)||(5256-5387)
[»] scaffold0289 (1 HSPs)
scaffold0289 (375-473)||(10928-11026)


Alignment Details
Target: chr4 (Bit Score: 630; Significance: 0; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 19 - 676
Target Start/End: Original strand, 6613939 - 6614596
Alignment:
Q  19 tacaaaagaggaatttcgggacgcaatgttttccatgcatccggacaagtgcccaggccttgacggctatagtccaggattttatcagcatttctggagt 118  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6613939 tacaaaagaggaatttcaggacgcaatgttttccatgcatccggacaagtgcccaggccttgacggctatagtccgggattttatcagcatttctggagt 6614038  T
Q  119 ctatgcagtgatgatatttacaaagaatgttgtgcttggcttgatacagggcagttcccacctgatctcaatatgaaaaatattgcaattatacccaaag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6614039 ctatgcagtgatgatatttacaaagaatgttgtgcttggcttgatacagggcagttcccacctgatctcaatatgaaaaatattgcaattatacccaaag 6614138  T
Q  219 gcaattccctacacagtatgaaggattggcgtccaatagctctctgtaatgtactttataaggaggaggaaagggatcatttgtttttccaatgtgatta 318  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6614139 gcaattccctatacagtatgaaggattgtcgtccaatagctctctgtaatgtactttataaggaggaggaaagggatcatttgtttttccaatgtgatta 6614238  T
Q  319 ttatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttgga 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6614239 ttatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttgga 6614338  T
Q  419 ggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaa 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6614339 ggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaa 6614438  T
Q  519 ttgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggag 618  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6614439 ttgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgtttgttttttattattcttattggag 6614538  T
Q  619 acaaaaccctttaccttgtttaaatactattttgtaaagtctgttttttgggcctttg 676  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6614539 acaaaaccctttaccttgtttaaatactattttgtaaagtcttttttttgggcctttg 6614596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 277 - 664
Target Start/End: Original strand, 23158313 - 23158700
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  23158313 taaggaggaggaaagggatcatttgtttttccaatatgattattatggtcgattatggcttatgctatcggattggttaggttttgttacggttctcaat 23158412  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    |||||||||||| | ||||| ||||||||||| ||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||| ||    
T  23158413 ggcaatttatatactcatgctaatcagttttgcgctcttggaggtttctcaaagaattctatgaaagcttttactattatttggatttcggtcttatata 23158512  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||| |||||| | ||||||||||||||||||||    
T  23158513 ctatatgaaaagatcgcaacaggaggattttccaaaaccaaattgttcttttggaagttctacttgaaagagtcaaatttcaaacgttttggtggttgaa 23158612  T
Q  577 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttt 664  Q
    |||||||| ||| |||||||||||||||||||||||||||||| |||| | ||||||||||||| | ||| |||||||||||||||||    
T  23158613 agctaactgcatcttgttcgttttttattattcttattggagaaaaaatcatttaccttgtttacagactgttttgtaaagtctgttt 23158700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 277 - 640
Target Start/End: Original strand, 36279366 - 36279729
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  36279366 taaggaggagaaaagggatcatttgtttttccaatgtgcttattatggtcgattatggcttatgctatcggattggttaggttttgttacggttttcaat 36279465  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    |||||||||||| | ||||| ||||||||||| ||||||||||||||||||||||||| | ||||||| ||| |||||||||||||||||||||||| ||    
T  36279466 ggcaatttatatactcatgctaatcagttttgcgctcttggaggtttctcaaagaattatatgaaagcttttactattatttggatttcggtcttatata 36279565  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||| |||||||| ||||||||||||||||||||    
T  36279566 ctatatggaaagatcgcaacaggaggattttccaaaaccaaattgttcttttggaagttctacttgaaagagtcaaacttcaaacgttttggtggttgaa 36279665  T
Q  577 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgttta 640  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||| | |||||||||||||    
T  36279666 agctaactacatcttgttcgttttttattattcttattggagaaaaaatcttttaccttgttta 36279729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 277 - 669
Target Start/End: Original strand, 15649230 - 15649622
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    ||||||||||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||  ||||||    
T  15649230 taaggaggaggaaagagaccatttattttttcaatgtgattattatggtcggttatggcttatgctatcagattggttaggttttgtcacggcgctcaat 15649329  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    || || |||||||||||||| |||||||||||||| |||||||| ||||||||| ||||| || || | ||||||||||||||||||||||||||||||     
T  15649330 ggaaacttatattcacatgctaatcagttttgtgcacttggaggattctcaaagcattctatgcaaactttttctattatttggatttcggtcttatttt 15649429  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
    |||| ||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  15649430 ctatttggaaagatcgtaacaggaggatttttcaaaacgaaattgttcatatggaagttcttcttgaaagggtcaaacttcaaacgttttggtggttgaa 15649529  T
Q  577 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttttgg 669  Q
    |||||||||||| |||||||||||| |||||||||||||||| |||||||| ||| |||||||| | |||||| |||||||||||||||||||    
T  15649530 agctaactacatattgttcgtttttgattattcttattggaggcaaaacccattatcttgtttacagactattgtgtaaagtctgttttttgg 15649622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 277 - 588
Target Start/End: Original strand, 18116545 - 18116857
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||| | |||    
T  18116545 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttttgctatcggattggcttggttttgttacggtttttaat 18116644  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    |||||||||||| || |||| ||||||||||| ||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  18116645 ggcaatttatatacaaatgctaatcagttttgcgctcttggaggcttctcaaagaattctatgaaagcatttactattatttggatttcggtcttattta 18116744  T
Q  477 ctatatggaaagatcgcaacaggaggatttttc-aaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttga 575  Q
    ||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||    
T  18116745 ctatatggaaagatcgcaataggaggattttccaaaaaccaaattgttcatttggaagttatacttgaaagggtcaaacttcaaacgttttggtggttga 18116844  T
Q  576 aagctaactacat 588  Q
    |||||||||||||    
T  18116845 aagctaactacat 18116857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 277 - 664
Target Start/End: Complemental strand, 51872744 - 51872357
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||    
T  51872744 taaggaggaggaaagggatcatttgtttttccaatgcgattattatggtcgattatggcttatgctatcggattggttaggtttggttacagttcttaat 51872645  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    ||||||| |||| | ||||| ||||||||||||| ||| ||||||||||||||||||||| ||||||| ||| ||||||||||||| |||| ||||| ||    
T  51872644 ggcaattcatatactcatgctaatcagttttgtggtctaggaggtttctcaaagaattctatgaaagcttttactattatttggatatcggccttatata 51872545  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
    |||| |||||| ||||||||||||||||||| |||||||||||||||| |||||| ||||| |||||||| |||||||| ||||||||||||||||||||    
T  51872544 ctatttggaaaaatcgcaacaggaggattttccaaaaccaaattgttcttttggaggttctacttgaaagagtcaaacttcaaacgttttggtggttgaa 51872445  T
Q  577 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttt 664  Q
    |||||||||||| |||||||||||| |||| |||||||||| | | || |||||||||| |||| | | | | |||||||||||||||    
T  51872444 agctaactacatcttgttcgtttttgattactcttattggaaaaataatcctttaccttatttacagattgtgttgtaaagtctgttt 51872357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 278 - 666
Target Start/End: Original strand, 17838698 - 17839086
Alignment:
Q  278 aaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaatg 377  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||  || ||||| ||||  | ||||||||||||||  |  |||    
T  17838698 aaggaggagaaaagggatcatttgttttttcaatgtgattattatggtcgattatggctcttgatatcgaattgacttggttttgttacggtgtttcatg 17838797  T
Q  378 gcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttac 477  Q
    ||||||||||| ||||||| |||||||||||||||||||| || || |||||||||||  ||||||| || |||||||||||||||| ||| ||||||      
T  17838798 gcaatttatatacacatgctaatcagttttgtgctcttgggggcttttcaaagaattccatgaaagctttgtctattatttggattttggttttatttgt 17838897  T
Q  478 tatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaa 577  Q
    ||| |||||||||||||||| || |||||| |||||||| || | |||| | |||| ||||||||||||||| ||||| ||||| ||||||||| |||||    
T  17838898 tatttggaaagatcgcaacatgaagattttccaaaaccatatggatcatcttgaagctcttcttgaaagggttaaacttcaaactttttggtggatgaaa 17838997  T
Q  578 gctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttt 666  Q
    || |||| |||  |||||  |||| ||||| | | |||||||||||| || |||  ||||||| | |||   |||||| ||||||||||    
T  17838998 gcaaacttcatcatgttcacttttgattatcccttttggagacaaaatcccttatgttgtttacagactgccttgtaatgtctgttttt 17839086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 277 - 584
Target Start/End: Complemental strand, 22340638 - 22340331
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||  || | ||| ||||||| ||||||||||||||  |  ||    
T  22340638 taaggaggaggaaagagatcatttgttttttcaatgtgattattatggtcgattatggctcttggtttcgaattggtttggttttgttacggtgtttcat 22340539  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    |||||||||||| | ||||| |||||||||||||||||||||||||| |||||||||||| ||||||| || |||||||||||||||| ||| ||||||     
T  22340538 ggcaatttatatcctcatgctaatcagttttgtgctcttggaggtttttcaaagaattctatgaaagctttgtctattatttggattttggttttatttg 22340439  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
     ||||||||||||||||||   || |||||| |||||| | || | |||| | |||| ||||||||||| ||| ||||| ||||| ||||||||| ||||    
T  22340438 ttatatggaaagatcgcaatttgaagattttccaaaacaatatggatcatcttgaagctcttcttgaaaaggttaaacttcaaactttttggtggatgaa 22340339  T
Q  577 agctaact 584  Q
    ||| ||||    
T  22340338 agcaaact 22340331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 277 - 665
Target Start/End: Complemental strand, 8110977 - 8110589
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    |||||||||||||||||| ||||| ||||| ||||||||| |||||||||| ||||||||  || ||||| ||||||| ||| |||||| |||  |  ||    
T  8110977 taaggaggaggaaagggaccatttcttttttcaatgtgatcattatggtcgattatggctcttgatatcgaattggtttggtattgttaaggtgtttcat 8110878  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    |||||| ||| ||||||||| ||||||||||||||||||||||| |||||||||||||||  || ||| ||| ||||||| ||||||||||||||||||     
T  8110877 ggcaatatattttcacatgctaatcagttttgtgctcttggagggttctcaaagaattctaggacagcttttactattatatggatttcggtcttatttg 8110778  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
     ||| ||||| || |||||||||||||||||||| |||||| |||  ||| | |||| |||| |||||||||| ||||| || || | ||||||| ||||    
T  8110777 ttatttggaaggaccgcaacaggaggatttttcagaaccaagttgaacatctcgaagctctttttgaaagggttaaacttcagacttattggtggctgaa 8110678  T
Q  577 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgtttt 665  Q
    |||  ||| |||    |||| |||| ||||| | | |||||||||||| ||||||| ||||||| | ||| || ||||| |||||||||    
T  8110677 agcagacttcatcactttcgcttttgattatcccttttggagacaaaatcctttacattgtttacagactgttgtgtaatgtctgtttt 8110589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 276 - 624
Target Start/End: Original strand, 15705722 - 15706070
Alignment:
Q  276 ataaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaa 375  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||  || ||||| ||||  | |||||||||||||| ||  |    
T  15705722 ataaggaggaggaaagggatcatttgttttttcaatgtgattattatggtcgattatggctcttgatatcgaattgacttggttttgttacggtgcttca 15705821  T
Q  376 tggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattt 475  Q
    ||||||||||||| | ||||| || || |||||||| ||||||| ||| ||||||| ||||  |||||| || |||||| ||||||||||||| ||||||    
T  15705822 tggcaatttatatacccatgctaaccaattttgtgcccttggagatttttcaaagagttctacgaaagctttatctattgtttggatttcggttttattt 15705921  T
Q  476 actatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttga 575  Q
    | ||| |||||||||||||| | || |||||| |||||||| || | |||| | |||| ||||||||||||||| ||||| ||||| ||||||||| |||    
T  15705922 attatttggaaagatcgcaatatgaagattttccaaaaccatatgggtcatcttgaagctcttcttgaaagggttaaacttcaaaccttttggtggatga 15706021  T
Q  576 aagctaactacattttgttcgttttttattattcttattggagacaaaa 624  Q
    ||||  ||| ||||  ||||  |||| ||||| | | ||||||||||||    
T  15706022 aagcacacttcattacgttcaattttgattatcccttttggagacaaaa 15706070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 277 - 584
Target Start/End: Original strand, 29123602 - 29123908
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggt-tctcaa 375  Q
    ||||||||||||||| || ||||||||||| |||||||||| ||||||||| ||||||||  || | ||| ||||| | |||||||||||||| | ||||    
T  29123602 taaggaggaggaaagagaccatttgttttttcaatgtgatttttatggtcgattatggctcttggtttcgaattggcttggttttgttacggtgtttcaa 29123701  T
Q  376 tggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattt 475  Q
     |||||||||||| | ||||| |||||||||||||||||||||||||| |||||||||||| ||||||| || |||||||||||||||||||| ||||||    
T  29123702 -ggcaatttatatcctcatgctaatcagttttgtgctcttggaggttt-tcaaagaattctatgaaagctttgtctattatttggatttcggttttattt 29123799  T
Q  476 actatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttga 575  Q
      ||| ||||||||||||||   ||||||||| |||||| | || | |||| | |||| ||||||||||| ||| ||||| ||||| ||||||||| |||    
T  29123800 gttatttggaaagatcgcaatttgaggattttccaaaacaatatggatcatcttgaagctcttcttgaaaaggttaaacttcaaactttttggtggatga 29123899  T
Q  576 aagctaact 584  Q
    |||| ||||    
T  29123900 aagcaaact 29123908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 277 - 624
Target Start/End: Original strand, 4303365 - 4303712
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||  || ||||| ||||| | ||||||||||||||  |  ||    
T  4303365 taaggaggaggaaagggaccatttgttttttcaatgtgattattatggtcgattatgactcttgatatcgaattggcttggttttgttacggtgtttcat 4303464  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    |||||||||||| | ||||| ||||| |||||||| ||||||||||| ||||||| ||||  |||||| || |||||| ||||||||||| | ||||||     
T  4303465 ggcaatttatatacccatgctaatcaattttgtgcccttggaggtttttcaaagagttctacgaaagctttgtctattgtttggatttcgattttatttg 4303564  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
     ||| |||||||||||||| | || |||||| |||||||| || | |||| | |||| ||||||||||||||| ||||| ||||| ||||||||| ||||    
T  4303565 ttatttggaaagatcgcaatatgaagattttccaaaaccatatgggtcatcttgaagctcttcttgaaagggttaaacttcaaaccttttggtggatgaa 4303664  T
Q  577 agctaactacattttgttcgttttttattattcttattggagacaaaa 624  Q
    |||  ||| ||||  ||||  |||| ||||| | | ||||||||||||    
T  4303665 agcacacttcattacgttcaattttgattatcccttttggagacaaaa 4303712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 528 - 666
Target Start/End: Original strand, 4723310 - 4723448
Alignment:
Q  528 tggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccc 627  Q
    ||||||||||| || ||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||| ||    
T  4723310 tggaagttcttattaaaagggtcaaacttcaaacgttttggtggttgaaggctaactacatcttgttcgtttttgattattcttattggagacaaaatcc 4723409  T
Q  628 tttaccttgtttaaatactattttgtaaagtctgttttt 666  Q
    ||||||||||||| | ||| |||||||||||||||||||    
T  4723410 tttaccttgtttacagactgttttgtaaagtctgttttt 4723448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 277 - 630
Target Start/End: Complemental strand, 12915850 - 12915497
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    ||||||||||||||| ||  |||| ||||| ||||||||  ||||||| |||||||||||  || ||||| | ||| | ||| ||||||||||| |  ||    
T  12915850 taaggaggaggaaagagacaatttattttttcaatgtgaccattatgggcggttatggctcttggtatcgcagtggcttggtattgttacggttttacat 12915751  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    || |||||| || | ||||| ||||| ||||||||||| || || ||||||| ||  |||  |  ||| ||| ||||||||| |||||||||||||| |     
T  12915750 ggtaatttacatactcatgctaatcatttttgtgctctcggtggcttctcaaggaggtctacgttagcgtttactattatttagatttcggtcttatatg 12915651  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
     |||||||||||||||||||||||| ||||| ||||| ||  ||| |||| | |||| |||| | |||||||| ||||| ||||||| ||||||||||||    
T  12915650 ttatatggaaagatcgcaacaggagaattttccaaaatcactttgatcatctagaagctcttatggaaagggttaaacttcaaacgtattggtggttgaa 12915551  T
Q  577 agctaactacattttgttcgttttttattattcttattggagacaaaacccttt 630  Q
    ||| |||| ||||   ||||||||| | |||   | |||||||||||| |||||    
T  12915550 agcaaacttcattacattcgtttttgactatcacttttggagacaaaatccttt 12915497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 277 - 640
Target Start/End: Original strand, 29192478 - 29192841
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    |||||| ||||||||||| ||| ||||||| || |||||| ||||||||||  | |||||  || | ||  | ||| | ||| |||||||   | | |||    
T  29192478 taaggaagaggaaagggaccatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttggtattgttacaactttgaat 29192577  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    || |||||| ||||||||||   ||| |||||||||||||| ||||| ||||| || ||| ||| ||  ||| ||||||||||||||||||| |||||      
T  29192578 ggtaatttacattcacatgcttctcaattttgtgctcttgggggtttttcaaaaaactctatgacaggttttactattatttggatttcggttttattcg 29192677  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
      || | ||||||| | |||||||| ||||||||  | ||  ||| | || | |||| ||| ||||||||||| ||||||||||||||||||||||||||    
T  29192678 tcatttagaaagatagaaacaggagaatttttcagcatcattttgattatcttgaagctctacttgaaagggttaaactccaaacgttttggtggttgaa 29192777  T
Q  577 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgttta 640  Q
    ||| || |||||  |||||| |||| | ||| | ||||||||  |||| ||||||| |||||||    
T  29192778 agcgaattacatcatgttcgattttgactatccctattggaggaaaaatcctttactttgttta 29192841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 277 - 601
Target Start/End: Original strand, 50693917 - 50694241
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    |||||| |||||||||||||||||||||||  | |||||| ||||||| ||  | |||||| |  | ||  | ||||| ||| |||||||   | | |||    
T  50693917 taaggaagaggaaagggatcatttgttttttaattgtgatcattatgggcgactttggcttttaatttctcagtggtttggtattgttacaactttgaat 50694016  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    || |||||||| || ||||| | ||| |||||||||||||||||||||||||| || | |  || |   ||| |  |||||||||||||||| |||||      
T  50694017 ggtaatttatactctcatgctactcaattttgtgctcttggaggtttctcaaaaaagtgtaggacatgttttacagttatttggatttcggttttattcg 50694116  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
      || ||||||||| | |||||||| |||||||| || ||  ||| |||| | |||||||||||||||||||| ||||| ||||||||||||||| ||||    
T  50694117 tcatttggaaagatagaaacaggagaatttttcagaatcactttgatcatcttgaagttcttcttgaaagggttaaacttcaaacgttttggtggctgaa 50694216  T
Q  577 agctaactacattttgttcgttttt 601  Q
    ||| || | |||| |||||| ||||    
T  50694217 agcgaattgcattatgttcgatttt 50694241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 277 - 418
Target Start/End: Complemental strand, 3621561 - 3621420
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    ||||||||||||||| || ||||| ||||||||||||||| |||||||||||||||||||  || || || ||||||| ||| ||||||| ||  |  ||    
T  3621561 taaggaggaggaaagagaccatttttttttccaatgtgatcattatggtcggttatggctcttgttaacgaattggtttggtattgttactgtgtttcat 3621462  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttgga 418  Q
    |||||| ||| |||||||||  ||||||||||||||||||||    
T  3621461 ggcaatctattttcacatgctcatcagttttgtgctcttgga 3621420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 23 - 267
Target Start/End: Original strand, 28858060 - 28858304
Alignment:
Q  23 aaagaggaatttcgggacgcaatgttttccatgcatccggacaagtgcccaggccttgacggctatagtccaggattttatcagcatttctggagtctat 122  Q
    ||||||||||||||   |||||||||||| ||||| ||||| || ||||  || |  || || |||| ||  || |||||||| ||||| |||||||| |    
T  28858060 aaagaggaatttcgaatcgcaatgttttctatgcacccggataaatgccatggtcccgatgggtataatctgggtttttatcaacatttttggagtcttt 28858159  T
Q  123 gcagtgatgatatttacaaagaatgttgtgcttggcttgatacagggcagttcccacctgatctcaatatgaaaaatattgcaattatacccaaaggcaa 222  Q
    | || ||||| ||||  ||||||||||||||||||||||| |  || || ||||| || || || ||||||| |||||||||  |||| || |||||  |    
T  28858160 gtagcgatgacatttttaaagaatgttgtgcttggcttgacatgggtcaattcccgccggacctgaatatgacaaatattgctcttattccaaaaggtca 28858259  T
Q  223 ttccctacacagtatgaaggattggcgtccaatagctctctgtaa 267  Q
    ||||| ||| ||||||||||||||||| || ||||||||||||||    
T  28858260 ttcccaacatagtatgaaggattggcgccctatagctctctgtaa 28858304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 277 - 601
Target Start/End: Complemental strand, 36951260 - 36950936
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    |||||| |||||||||||||||||||||||  | |||||| ||||||| ||  | |||||| |  | ||  | ||| | |||||||||||   ||| |||    
T  36951260 taaggaagaggaaagggatcatttgttttttaattgtgatcattatgggcgactttggcttttaatttctcagtggcttggttttgttacaactctgaat 36951161  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    || |||||||| || ||||| | ||| |||||||||||||||||||||||||| || |||  || || |||| |  |||| ||||| || || |||||      
T  36951160 ggtaatttatactctcatgctactcaattttgtgctcttggaggtttctcaaaaaaatctaggacaggatttacagttatctggatgtctgttttattcg 36951061  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
      || ||||||||||| ||||| || |||||||| || ||  ||| |||| | |||| ||||||||||||| | ||||| ||||||||||||||| ||||    
T  36951060 tcatttggaaagatcgaaacagaagaatttttcagaatcactttgatcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggctgaa 36950961  T
Q  577 agctaactacattttgttcgttttt 601  Q
    ||| || ||| || |||||| ||||    
T  36950960 agcgaattacgttatgttcgatttt 36950936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 441 - 632
Target Start/End: Complemental strand, 12290687 - 12290496
Alignment:
Q  441 aagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttct 540  Q
    |||| ||| ||||||||||||||||||||||||||  ||| ||||||||||| || || ||||||||||| ||||||| ||  ||| | |||| ||||      
T  12290687 aagcttttactattatttggatttcggtcttatttgttatttggaaagatcgaaatagaaggatttttcagaaccaaagtgaacatctcgaagctctttc 12290588  T
Q  541 tgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttac 632  Q
     |||||||| ||||| || || | ||||||||||||||| |||| |||  |||||  |||| | ||||| | ||||||||||||||||||||    
T  12290587 ggaaagggttaaacttcagacttattggtggttgaaagcaaacttcatcatgttcacttttgactattccttttggagacaaaaccctttac 12290496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 374 - 601
Target Start/End: Complemental strand, 34994688 - 34994461
Alignment:
Q  374 aatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttat 473  Q
    ||||| |||||||| || ||||| | ||| |||||||||||||||||||||||||| || |||  || || |||| |  |||| |||||||| || ||||    
T  34994688 aatggtaatttatactctcatgctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacaggatttacagttatatggatttctgttttat 34994589  T
Q  474 ttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggtt 573  Q
    |    || ||||||||| | |||||||| |||||||| || ||   || |||| | |||| ||||||||||||| | ||||| ||||||||||||||| |    
T  34994588 tcgtcatttggaaagatagaaacaggagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggct 34994489  T
Q  574 gaaagctaactacattttgttcgttttt 601  Q
    |||||| || ||||||||||||| ||||    
T  34994488 gaaagcgaattacattttgttcgatttt 34994461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 482 - 667
Target Start/End: Complemental strand, 3621423 - 3621238
Alignment:
Q  482 tggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagcta 581  Q
    ||||||||||| ||||||||||||||||| ||||||| ||  ||| | |||| |||| |||||||||| ||||| || || | ||||||||||||||| |    
T  3621423 tggaaagatcgtaacaggaggatttttcagaaccaaaatgaacatcttgaagctctttttgaaagggttaaacttcagacttattggtggttgaaagcaa 3621324  T
Q  582 actacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgtttttt 667  Q
    |||   |  |||||| |||| | ||||||| |||||||||||||| ||||| ||||||| | ||| |  ||||| |||||||||||    
T  3621323 actttgtcatgttcgcttttgactattctttttggagacaaaaccatttacattgtttacagactgtcatgtaatgtctgtttttt 3621238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 277 - 601
Target Start/End: Original strand, 17469287 - 17469611
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    |||||| |||||||||||||||||||||||  | |||||| ||||||| ||  | |||||| |  | ||  | ||| | ||| |||||||   ||| |||    
T  17469287 taaggaagaggaaagggatcatttgttttttaattgtgatcattatgggcgactttggcttttattttctcagtggcttggtattgttacaactctgaat 17469386  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttcta-ttatttggatttcggtcttattt 475  Q
    || |||||||| || ||||| | ||| |||||||||||||||||||||||||| || |||  || ||  |||| || ||||||| ||||| |  |||||     
T  17469387 ggtaatttatactctcatgctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacagg-ttttatagttatttgaatttcagctttattc 17469485  T
Q  476 actatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttga 575  Q
       || ||||||||| | |||||||| |||||||| || ||  ||| |||| | |||| ||||||||||||| | ||||| ||||| ||||||||| |||    
T  17469486 gtcatttggaaagatagaaacaggagaatttttcagaatcactttgatcatcttgaagctcttcttgaaaggattaaacttcaaacattttggtggctga 17469585  T
Q  576 aagctaactacattttgttcgttttt 601  Q
    |||| || |||||| |||||| ||||    
T  17469586 aagcgaattacattatgttcgatttt 17469611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 383 - 589
Target Start/End: Complemental strand, 24059596 - 24059390
Alignment:
Q  383 ttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatat 482  Q
    |||||| | ||| ||||||||||||  |||||| |||| ||||||||||||||   || | |||| |||||||||||||||||||||||||||  ||| |    
T  24059596 ttatatgctcattcaaatcagttttaagctcttagagggttctcaaagaattcaaggacatcattctctattatttggatttcggtcttatttgttatct 24059497  T
Q  483 ggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaa 582  Q
    | ||||| || ||||  || |||||| | || ||  ||| |||  |   ||  |||||||||| ||| ||||||||||| | ||||||||||||||| ||    
T  24059496 gaaaagaccgtaacaatagaattttttataatcattttgatcagcttacaggacttcttgaaaaggttaaactccaaacatattggtggttgaaagcgaa 24059397  T
Q  583 ctacatt 589  Q
    |||||||    
T  24059396 ctacatt 24059390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 450 - 631
Target Start/End: Complemental strand, 25135164 - 25134983
Alignment:
Q  450 ctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggt 549  Q
    |||||||||||||||| |||||||||  ||| ||||||||||| ||||| ||  ||||||| ||  |  | | |||  | | ||  ||||| |||| |||    
T  25135164 ctattatttggatttcagtcttatttgttatttggaaagatcgtaacagtagagtttttcataatgacttggatcagcttgcagggcttctcgaaaaggt 25135065  T
Q  550 caaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaacccttta 631  Q
     |||| |||||| | ||||||||||||||| ||||||||| ||||||  ||  | ||||||| |||||| ||||| ||||||    
T  25135064 taaacaccaaacttattggtggttgaaagcgaactacattatgttcgacttcgagtattctttttggaggcaaaatccttta 25134983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 277 - 669
Target Start/End: Original strand, 27914764 - 27915156
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  27914764 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgatatcagattggttaggttttgttacggttctcaat 27914863  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27914864 ggcaatttatattcacatgcaaaccagttttgtgctcttggaggtttctcaaagaattctttgaaagcatttactattatttggatttcggtcttattta 27914963  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  27914964 ctatatggaaagatcgcaacaggaggattttccaaaaccaaattgttcatttgaaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 27915063  T
Q  577 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttttgg 669  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||    
T  27915064 agctaactacatattgttcgttttttattattcttattggagacaaaaccctttaccttgtttacagaatattttgtaaagtctgttttttgg 27915156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 281 - 676
Target Start/End: Complemental strand, 23384898 - 23384516
Alignment:
Q  281 gaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaatggca 380  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23384898 gaggaggaaagtgatcatttgttcttccaatgtgattattatggttggttatggcttatgctatcgaattggttaggttttgttacggttctcaatggca 23384799  T
Q  381 atttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactat 480  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23384798 atttatattcacatgcaaatcagttttgtactcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactat 23384699  T
Q  481 atggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagct 580  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  23384698 atggaaagatcacaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaatgttttggtggttgaaagct 23384599  T
Q  581 aactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttttgggcctttg 676  Q
    |||||||| ||||||||||             |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  23384598 aactacatattgttcgttt-------------ttggagacaaaaccctttaccttgtttacagactattttgtaaagtctgttttttgggcctttg 23384516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 277 - 670
Target Start/End: Complemental strand, 21963467 - 21963074
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    |||||||||||||| ||||||||||||||| | |||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||| |||    
T  21963467 taaggaggaggaaaaggatcatttgttttttcgatgtgattattatggtaggttatggcttatgctatcagattggttaggttttgtgacggttcttaat 21963368  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    |||||||||||||||||||| |||||||||||||| ||||| |||||||||||| ||| | || |||| |||||||||||||||||||||||||||||||    
T  21963367 ggcaatttatattcacatgctaatcagttttgtgcacttggcggtttctcaaagcattttgtgcaagctttttctattatttggatttcggtcttattta 21963268  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21963267 ctatttggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatctggaagtccttcttgaaagggtcaaactccaaacgttttggtggttgaa 21963168  T
Q  577 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttttggg 670  Q
    |||||||||||| |||||||||||| |||||||||||||||| ||||||||||||| ||||||| | |||||| ||||||||||||||||||||    
T  21963167 agctaactacatattgttcgtttttgattattcttattggaggcaaaaccctttacattgtttacagactattgtgtaaagtctgttttttggg 21963074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 277 - 660
Target Start/End: Complemental strand, 32349933 - 32349550
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32349933 taaggaggaggaaagggatcatttgtttttccaatgcgattattatggtcgattatggcttatgctatcggattggttaggatttgttacggttctcaat 32349834  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    |||||||||||| | ||||| ||||||||||| ||||| ||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||  |    
T  32349833 ggcaatttatatactcatgctaatcagttttgcgctctaggaggtttctcaaagaattctatgaaagcttttactattatttggatttcggtcttataca 32349734  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| |||| | || || |||||||| |||||||| ||||||||||||| ||||||    
T  32349733 ctatatggaaagatcgcaacaggaggattttccaaaaccaaattgttcttttgaaggtgctacttgaaagagtcaaacttcaaacgttttggtagttgaa 32349634  T
Q  577 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtct 660  Q
    || ||||||||| |||||||||||| |||| ||||||||||||  ||| ||||||||||||||| | ||| |||||||||||||    
T  32349633 agttaactacatcttgttcgtttttgattactcttattggagaataaatcctttaccttgtttacagactgttttgtaaagtct 32349550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 277 - 523
Target Start/End: Complemental strand, 30275948 - 30275703
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||     
T  30275948 taaggaggaggaaagagatcatttgtttttccaatgtgattattatggtcgattatgacttatgttatcggattggttaggttttgttacggttctcaac 30275849  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    |||||||||||| | ||||| ||||||||||| |||| | |||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||| ||    
T  30275848 ggcaatttatatactcatgctaatcagttttgcgctc-tagaggtttctcaaagaattctatgaaagcttttactattatttggatttcggtcttatata 30275750  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgtt 523  Q
    ||||||| ||||||||||||||||| ||||| |||||||||||||||    
T  30275749 ctatatgaaaagatcgcaacaggagaattttccaaaaccaaattgtt 30275703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 277 - 584
Target Start/End: Complemental strand, 38938531 - 38938224
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    |||||||||||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||  || ||||| ||||| | |||||||||| |||  | |||    
T  38938531 taaggaggaggaaagggaccatttattttttcaatgtgattattatggtcgattatgactcttgatatcgaattggcttggttttgttatggtgtttaat 38938432  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    |||||||||||| ||||||| ||||| |||||||||||| |||| || |||||||||||| ||||||| ||| |||||||||||||||| |||||||||     
T  38938431 ggcaatttatatacacatgctaatcatttttgtgctcttagaggcttttcaaagaattctatgaaagcttttactattatttggatttctgtcttatttg 38938332  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
     ||| |||||||||||||||| || |||||| |||||||| || |  ||| | |||| ||||||||||||||| ||||| ||||| |||||| |||||||    
T  38938331 ttatttggaaagatcgcaacatgatgattttccaaaaccatatggaccatcttgaagctcttcttgaaagggttaaacttcaaactttttggcggttgaa 38938232  T
Q  577 agctaact 584  Q
    ||| ||||    
T  38938231 agcaaact 38938224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 533 - 664
Target Start/End: Complemental strand, 30274532 - 30274400
Alignment:
Q  533 gttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggag-acaaaacccttta 631  Q
    ||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||| ||||||    
T  30274532 gttctacttgaaagagtcaaacttcaaacattttggtggttgaaagctaactacatcttgttcgttttttattattcttattggagaaaaaaatccttta 30274433  T
Q  632 ccttgtttaaatactattttgtaaagtctgttt 664  Q
    ||||||||| | ||| |||||||||||||||||    
T  30274432 ccttgtttacagactgttttgtaaagtctgttt 30274400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 375 - 661
Target Start/End: Original strand, 33937038 - 33937322
Alignment:
Q  375 atggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatt 474  Q
    |||| |||||| | |||||||| |  || |||||||||||||||||||| ||||| ||  ||  || || |||| || |||||||||||||||| |||||    
T  33937038 atggtaatttacactcacatgctacccaattttgtgctcttggaggtttttcaaaaaa--ctacgacaggatttactgttatttggatttcggttttatt 33937135  T
Q  475 tactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttg 574  Q
        || ||||||||| | |||||||| |||||||| || ||  ||| |||| | |||| ||| ||||||||||| ||||||||||||| ||||||||||    
T  33937136 cgtcatttggaaagatagaaacaggagaatttttcagaatcactttgatcatcttgaagctctccttgaaagggttaaactccaaacgtattggtggttg 33937235  T
Q  575 aaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctg 661  Q
    ||||| || |||||  |||||| |||| | ||| | ||||||||| |||| |||||| |||||||| | |||  ||||||| |||||    
T  33937236 aaagcgaattacatcatgttcgattttgactatccctattggagaaaaaatcctttagcttgtttacagactgctttgtaatgtctg 33937322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 360 - 661
Target Start/End: Complemental strand, 22298888 - 22298587
Alignment:
Q  360 ttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttg 459  Q
    ||||||||||| |  |||| |||||| | |||||||| |  || |||||||||||||||||||||||||| || |||  || ||  ||| || | |||||    
T  22298888 ttgttacggttttacatggtaatttacactcacatgctacccaattttgtgctcttggaggtttctcaaaaaactctaggacaggctttactgtcatttg 22298789  T
Q  460 gatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaa 559  Q
    |||||||||  ||||    ||||| |||||| | |||||||| ||||||||||| ||  ||| |||| | |||| ||| ||||||||||| |||||||||    
T  22298788 gatttcggttatattcgtcatatgaaaagattgaaacaggagaatttttcaaaatcactttgatcatcttgaagctctccttgaaagggttaaactccaa 22298689  T
Q  560 acgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtc 659  Q
    |||| ||||||||||||||| || |||||  |||| | |||| | ||| | ||||||||  |||| ||||||  ||||||| | ||| |||||||| |||    
T  22298688 acgtattggtggttgaaagcgaattacatcatgtttgattttgactatccctattggaggaaaaatcctttagtttgtttacagactgttttgtaatgtc 22298589  T
Q  660 tg 661  Q
    ||    
T  22298588 tg 22298587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 375 - 661
Target Start/End: Complemental strand, 1258422 - 1258135
Alignment:
Q  375 atggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatt 474  Q
    |||| |||||| | |||||||| |  || |||||||||||||||||||| ||||| || |||  || |  |||| || |||||||||||||||| |||||    
T  1258422 atggtaatttacactcacatgctacccaattttgtgctcttggaggtttttcaaaaaactctaggacaagatttactgttatttggatttcggttttatt 1258323  T
Q  475 tactatatggaaagatcgcaacaggaggattttt-caaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggtt 573  Q
        || ||||||||| | |||||||| |||||| || || ||  ||| |||| | |||| |||  |||||||||| |||||||||| || |||||||||    
T  1258322 cttcatttggaaagatagaaacaggagaattttttcataatcactttgatcatcttgaagctctctttgaaagggttaaactccaaatgtattggtggtt 1258223  T
Q  574 gaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctg 661  Q
    |||||| || |||||  || ||| |||| | ||| | ||||||||  |||| ||||||  ||||||| | |||  ||||||| |||||    
T  1258222 gaaagcgaattacatcatgctcgattttgactatccctattggaggaaaaatcctttagtttgtttacagactgctttgtaatgtctg 1258135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 383 - 489
Target Start/End: Complemental strand, 20007451 - 20007345
Alignment:
Q  383 ttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatat 482  Q
    |||||| | ||| ||||||| ||||||| ||||||||| |||||||| |||||   || | |||| |||||||||||||||||||||||||||  ||| |    
T  20007451 ttatatgctcattcaaatcaattttgtgttcttggagggttctcaaaaaattcaaggataacattctctattatttggatttcggtcttatttgttatct 20007352  T
Q  483 ggaaaga 489  Q
    |||||||    
T  20007351 ggaaaga 20007345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 27069901 - 27069945
Alignment:
Q  235 tatgaaggattggcgtccaatagctctctgtaatgtactttataa 279  Q
    ||||||||||||||| || |||||||| |||||||||||||||||    
T  27069901 tatgaaggattggcgacctatagctctgtgtaatgtactttataa 27069945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 279
Target Start/End: Original strand, 20468716 - 20468759
Alignment:
Q  236 atgaaggattggcgtccaatagctctctgtaatgtactttataa 279  Q
    |||||||||||||| || |||||||| |||||||||||||||||    
T  20468716 atgaaggattggcgacctatagctctgtgtaatgtactttataa 20468759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 5603844 - 5603768
Alignment:
Q  101 tatcagcatttctggagtctatgcagtgatgatatttacaaagaatgttgtgcttggcttgatacagggcagttccc 177  Q
    ||||| |||||||||| ||| || ||||||||||||   || || |||||| |||||||| | ||||||||||||||    
T  5603844 tatcaacatttctggaatctgtgtagtgatgatattgtgaaggattgttgtacttggcttaacacagggcagttccc 5603768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 277 - 670
Target Start/End: Original strand, 9403288 - 9403681
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9403288 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 9403387  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9403388 ggcaatttatattcacatgcaaatcagttttgtgcacttggaggtttctcaaagcattctttgaaagcattttctattatttggatttcggtcttattta 9403487  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9403488 ctatttggaaagatcgtaacaggaggatttttcaaaaccaaattgttcatctggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 9403587  T
Q  577 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttttggg 670  Q
    |||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||| | |||||| ||||||||||||||||||||    
T  9403588 agctaactacatattgttcgtttttgattattcttattggaggcaaaaccctttaccttgtttacagactattgtgtaaagtctgttttttggg 9403681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 278 - 669
Target Start/End: Original strand, 37075754 - 37076145
Alignment:
Q  278 aaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaatg 377  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  37075754 aaggaggaggaaagggatcatttgttttttcaatgtgattattatggtcggttatggcttatgctatcggattggttaggtattgttacggttctcaatg 37075853  T
Q  378 gcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttac 477  Q
     |||||||||||||||||| |||||||||||||| |||| ||| ||||||||| ||||| || || | ||||||||||||||||||||||||||||||||    
T  37075854 acaatttatattcacatgctaatcagttttgtgcacttgaaggattctcaaagcattctgtgcaaactttttctattatttggatttcggtcttatttac 37075953  T
Q  478 tatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaa 577  Q
    ||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37075954 tatttggaaagatcgtaacaggaggatttttcaaaaccaaattgttcatctggaagttcttcttgaaagggttaaactccaaacgttttggtggttgaaa 37076053  T
Q  578 gctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttttgg 669  Q
    ||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||| | |||||| |||||||||||||||||||    
T  37076054 gctaactacatattgttcgtttttgattattcttattggaggcaaaaccctttaccttgtttacagactattgtgtaaagtctgttttttgg 37076145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 277 - 669
Target Start/End: Complemental strand, 34981906 - 34981514
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    ||||||||||||||| || ||||| || || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||  ||||||    
T  34981906 taaggaggaggaaagagaccatttattctttcaatgtgattattatggtcggttatggcttatgctatcagattggttaggttttgtcacggcgctcaat 34981807  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    || || |||||||||||||| |||||||||||||| |||||||| ||||||||| ||||| || || | ||||||||||||||||||||||||||||||     
T  34981806 ggaaacttatattcacatgctaatcagttttgtgcacttggaggattctcaaagcattctatgcaaactttttctattatttggatttcggtcttatttt 34981707  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
    |||| ||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34981706 ctatttggaaagatcgtaacaggaggatttttcaaaacgaaattgttcatatggaagttcttcttgaaagggtcaaacttcaaacgttttggtggttgaa 34981607  T
Q  577 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttttgg 669  Q
    |||||||||||| |||||||||||| |||||||||||||||| |||||||| ||| |||||||| | |||||| |||||||||||||||||||    
T  34981606 agctaactacatattgttcgtttttgattattcttattggaggcaaaacccattatcttgtttacagactattgtgtaaagtctgttttttgg 34981514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 277 - 664
Target Start/End: Complemental strand, 12121645 - 12121258
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  12121645 taaggaggaggaaatggatcatttgtttttccaatgcgattattatggtcgattatggcttatgctatcggattggttaggtttggttacggttctcaat 12121546  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    | |||||||||| | ||||| ||||||||||| ||||| || |||||||||||||||||| ||||||| ||| ||||||||||||| || | ||||| ||    
T  12121545 gacaatttatatactcatgctaatcagttttgcgctctaggcggtttctcaaagaattctatgaaagcttttactattatttggatctcagccttatata 12121446  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||| |||||||| |||||||| ||||||||||||||||||||    
T  12121445 ctatatggaaagatcgcaacaggaggattttccaaaaccaaattgttcttttggaggttctacttgaaagagtcaaacttcaaacgttttggtggttgaa 12121346  T
Q  577 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttt 664  Q
    |||||||||||| |||||||||||| |||| |||||||||||| | || ||||||||||||||| | ||| | |||||||||||||||    
T  12121345 agctaactacatcttgttcgtttttgattactcttattggagaaataatcctttaccttgtttacagactgtgttgtaaagtctgttt 12121258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 277 - 662
Target Start/End: Complemental strand, 24819756 - 24819371
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24819756 taaggaggaggaaagggatcatttgtttttccaatgcgactattatggtcgtttatggcttatgctatcggattggttaggttttgttacggttctcaat 24819657  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    |||||||||||||| ||||| ||||||||||| ||| | || |||||||||||||||||| ||||||| ||| |||| ||||||||||||||||||| ||    
T  24819656 ggcaatttatattctcatgctaatcagttttgcgctttaggtggtttctcaaagaattctatgaaagcttttactatcatttggatttcggtcttatata 24819557  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
    |||||||||||| |||||||||||||||||| |||||||||| || || |||||| ||||| |||||||| |||||||| ||||| | ||||||||||||    
T  24819556 ctatatggaaagttcgcaacaggaggattttccaaaaccaaagtgctcttttggaggttctacttgaaagagtcaaacttcaaacatattggtggttgaa 24819457  T
Q  577 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgt 662  Q
    |||||| ||||| |||||||||||| ||||||| |||||||||   || ||||||||||||||| | ||| |||||||||||||||    
T  24819456 agctaattacatcttgttcgtttttgattattcgtattggagaattaatcctttaccttgtttacagactgttttgtaaagtctgt 24819371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 277 - 661
Target Start/End: Original strand, 36575545 - 36575929
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    |||||||||||||||||||||||||||||||||||| || | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36575545 taaggaggaggaaagggatcatttgtttttccaatgcgacttttatggtcgtttatggcttatgctatcggattggttaggttttgttacggttctcaat 36575644  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    |||||||||||||| ||||| ||||||||||| ||| | || |||||||||||||||||| ||||||| ||| |||| ||||||||||||||||||| ||    
T  36575645 ggcaatttatattctcatgctaatcagttttgcgctttaggtggtttctcaaagaattctatgaaagcttttactatcatttggatttcggtcttatata 36575744  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
    |||| ||||||||| ||||||||||||| || |||||||||| || || |||||| ||||| |||||||| |||||||| ||||| | ||||||||||||    
T  36575745 ctatttggaaagattgcaacaggaggatattccaaaaccaaagtgctcttttggaggttctacttgaaagagtcaaacttcaaacatattggtggttgaa 36575844  T
Q  577 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctg 661  Q
    |||||| ||||| |||||||||||| ||||||| |||||||||   || ||||||||||||||| | ||| ||||||||||||||    
T  36575845 agctaattacatcttgttcgtttttgattattcgtattggagaattaatcctttaccttgtttacagactgttttgtaaagtctg 36575929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 277 - 665
Target Start/End: Original strand, 40891927 - 40892315
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||| || ||||  ||||| | ||||||||||| ||  |  ||    
T  40891927 taaggaggaggaaatggaccatttgtttttccaatgtgattattatggtcagttatggcttttgatatcaaattggcttggttttgttacagtgtttcat 40892026  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    |||||||||||| ||||||  ||||||||||| |||||  |||  ||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||    
T  40892027 ggcaatttatatacacatgataatcagttttgcgctctaagagacttctcaaagaattctatgaaagcttttactattatttggatttcggtcttattta 40892126  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||| ||||||||||||||| ||||| ||||||||||||||||||||    
T  40892127 ctatatggaaagatcgcaacaggaggattttccaaaaccaaattgatcatctggaagctcttcttgaaagggttaaacttcaaacgttttggtggttgaa 40892226  T
Q  577 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgtttt 665  Q
    ||||||||||||   ||||| |||| | ||| | | |||||||||||| || |||  ||||||| | ||| | ||||||||||||||||    
T  40892227 agctaactacatcacgttcgcttttgactatcccttttggagacaaaatcccttatgttgtttacagactgtcttgtaaagtctgtttt 40892315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 277 - 582
Target Start/End: Complemental strand, 586843 - 586538
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| || ||||| ||||| | ||||||||||||||  |  ||    
T  586843 taaggaggaggaaagggatcatttgttttttcaatgtgattattatggtcgattatggcttctgatatcgaattggcttggttttgttacggtgtttcat 586744  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    | |||||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||| | ||||||| ||  |||||||||||||||||||||||||||    
T  586743 gacaatttatatacacatgctaatcagttttgcgctcttggaggcttctcaaagaattatatgaaagctttcactattatttggatttcggtcttattta 586644  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
    |||||||||||||||| ||| | ||||| || ||||||||||||| | | ||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  586643 ctatatggaaagatcgaaaccgaaggatattccaaaaccaaattgattaattggaagttcttcttgaaagggttaaacttcaaacgttttggtggttgaa 586544  T
Q  577 agctaa 582  Q
    ||||||    
T  586543 agctaa 586538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 486 - 676
Target Start/End: Original strand, 3483065 - 3483256
Alignment:
Q  486 aagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaacta 585  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3483065 aagatcgcaacaggaggattttccaaaaccaaattgttcatttggaagttctttttgaaagggtcaaactccaaacgttttggtggttgaaagctaacta 3483164  T
Q  586 cattttgttcg-ttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttttgggcctttg 676  Q
    ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||    
T  3483165 catattgttcgattttttattattcttattggagacaaaaccctttaccttgtttacagactattttgtaaagtctgttttttggacctttg 3483256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 277 - 664
Target Start/End: Original strand, 20705655 - 20706042
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    ||||||||||||||| || ||||||||||||||||||||| ||||||| |||||||||||| || ||||| ||||||| ||| ||||||| ||  |  ||    
T  20705655 taaggaggaggaaagagaccatttgtttttccaatgtgatcattatggccggttatggcttttgatatcgaattggtttggtattgttactgtgtttcat 20705754  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    |||| ||||| ||||||| |  ||||||||||||| |||||||| ||||| ||||| |||  |  ||| ||| |||||||||||||||||||||||||      
T  20705755 ggcactttattttcacatactcatcagttttgtgcacttggagggttctccaagaagtctacgtcagcttttactattatttggatttcggtcttattcg 20705854  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
     ||| ||||||||||| || |||||||||||||| ||||||  ||  ||| | |||| ||||  ||||||||| ||||| |  || | ||||||||||||    
T  20705855 ttatttggaaagatcgaaataggaggatttttcagaaccaacatgaacatctcgaagctctttctgaaagggttaaacttcggacttattggtggttgaa 20705954  T
Q  577 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttt 664  Q
    ||| || | |||  ||||   |||| | ||||| | |||||||||||||||||||| ||||||| | ||| | |||||| ||||||||    
T  20705955 agcaaatttcatcatgtttaattttgaatattccttttggagacaaaaccctttacattgtttacagactgtcttgtaatgtctgttt 20706042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 277 - 664
Target Start/End: Original strand, 20873699 - 20874086
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    ||||||||||||||| || ||||||||||||||||||||| ||||||| |||||||||||| || ||||| ||||||| ||| ||||||| ||  |  ||    
T  20873699 taaggaggaggaaagagaccatttgtttttccaatgtgatcattatggccggttatggcttttgatatcgaattggtttggtattgttactgtgtttcat 20873798  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    |||| ||||| ||||||| |  ||||||||||||| |||||||| ||||| ||||| |||  |  ||| ||| |||||||||||||||||||||||||      
T  20873799 ggcactttattttcacatactcatcagttttgtgcacttggagggttctccaagaagtctacgtcagcttttactattatttggatttcggtcttattcg 20873898  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
     ||| ||||||||||| || |||||||||||||| ||||||  ||  ||| | |||| ||||  ||||||||| ||||| |  || | ||||||||||||    
T  20873899 ttatttggaaagatcgaaataggaggatttttcagaaccaacatgaacatctcgaagctctttctgaaagggttaaacttcggacttattggtggttgaa 20873998  T
Q  577 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttt 664  Q
    ||| || | |||  ||||   |||| | ||||| | |||||||||||||||||||| ||||||| | ||| | |||||| ||||||||    
T  20873999 agcaaatttcatcatgtttaattttgaatattccttttggagacaaaaccctttacattgtttacagactgtcttgtaatgtctgttt 20874086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 438 - 665
Target Start/End: Complemental strand, 21608136 - 21607909
Alignment:
Q  438 tgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttct 537  Q
    ||||||| ||| ||||||||||||||||||||||||||| |||||| |||||||||||   ||||||||| ||||||||||||| ||||||||||| |||    
T  21608136 tgaaagcttttactattatttggatttcggtcttatttattatatgaaaagatcgcaaattgaggattttccaaaaccaaattgatcatttggaagctct 21608037  T
Q  538 tcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgt 637  Q
    | |||||||||| ||||| ||||||||||||||||||||||||||||||||   ||||| |||| ||||| | | |||||||||||| ||||||  ||||    
T  21608036 ttttgaaagggttaaacttcaaacgttttggtggttgaaagctaactacatcacgttcgcttttgattatcccttttggagacaaaaacctttatgttgt 21607937  T
Q  638 ttaaatactattttgtaaagtctgtttt 665  Q
    ||| |  || | ||||||||||||||||    
T  21607936 ttacagtctgtcttgtaaagtctgtttt 21607909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 441 - 662
Target Start/End: Complemental strand, 31253113 - 31252892
Alignment:
Q  441 aagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttct 540  Q
    |||| ||| |||| ||||||||||||||||||| |||||| ||||||||||||||||||||||| || ||||||||||  | || |||||| |||||  |    
T  31253113 aagcttttactatcatttggatttcggtcttatatactatttggaaagatcgcaacaggaggatattccaaaaccaaagcgctcttttggaggttctatt 31253014  T
Q  541 tgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgttta 640  Q
    |||||| |||||||| ||||| | |||||||||||||||||| ||||| |||||||||||||||||||| |||||||||   || | |||||||| ||||    
T  31253013 tgaaagagtcaaacttcaaacatattggtggttgaaagctaattacatcttgttcgttttttattattcgtattggagaattaatcatttaccttattta 31252914  T
Q  641 aatactattttgtaaagtctgt 662  Q
     |  || |||||||||||||||    
T  31252913 caggctgttttgtaaagtctgt 31252892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 318 - 625
Target Start/End: Complemental strand, 27278620 - 27278313
Alignment:
Q  318 attatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttgg 417  Q
    |||||||||||||||||||  || ||| | ||||||| ||| |||||||| || |  ||||||||||| || ||||||| |||||||||||||||||||     
T  27278620 attatggtcggttatggctcttgatattgcattggtttggtattgttacgattttacatggcaatttaaatacacatgctaatcagttttgtgctcttgc 27278521  T
Q  418 aggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaa 517  Q
    ||||||||||| |||||||   | ||| ||| ||||||| ||| ||| ||||||||||  ||||| ||||||||||||||| |  |||||  |||| ||     
T  27278520 aggtttctcaaggaattctagaacagcttttactattatatgggttttggtcttatttgttatattgaaagatcgcaacagtataattttctaaaatcac 27278421  T
Q  518 attgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattgga 617  Q
    |||| |||| | |||| ||||||| ||||||| ||| | ||| ||| ||||||||||||||| |||| |||  |||| | |||| | ||| ||| || ||    
T  27278420 attgatcatcttgaagctcttcttaaaagggttaaatttcaatcgtattggtggttgaaagcaaacttcatcatgtttgcttttaactatcctttttaga 27278321  T
Q  618 gacaaaac 625  Q
    ||||||||    
T  27278320 gacaaaac 27278313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 277 - 661
Target Start/End: Complemental strand, 27868959 - 27868585
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    |||||| ||||| | ||| ||||||||||| || |||||| ||||||| ||| | || ||| || | ||  | ||| | ||| |||||||||||||  ||    
T  27868959 taaggaagaggatatggaccatttgttttttcattgtgatcattatggacggctttgacttttgatctcacagtggcttggtattgttacggttctacat 27868860  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    || |||||| |||| ||||| ||||| ||||||||| ||||||||||||||||||| |||  || |   ||| ||||||||||||||| |   | ||||     
T  27868859 ggtaatttacattctcatgctaatcaattttgtgcttttggaggtttctcaaagaactctaggacaagttttactattatttggattttg---tcattt- 27868764  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
          ||||||| || |||||||  ||||||||  | || |||| |||| | |||| ||||||||||||| | ||| ||||||||| ||||||||||||    
T  27868763 ------ggaaagaccgaaacaggataatttttcagcatcacattgatcatctagaagctcttcttgaaaggattaaaatccaaacgtattggtggttgaa 27868670  T
Q  577 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctg 661  Q
    ||| || |||||  |||||| |||| | ||||| | ||||||  ||||| |||||  ||||||| | ||| |||||||| |||||    
T  27868669 agcgaattacatcatgttcgattttgactattccttttggaggaaaaactctttagtttgtttagagactgttttgtaatgtctg 27868585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 375 - 589
Target Start/End: Original strand, 18815654 - 18815868
Alignment:
Q  375 atggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatt 474  Q
    ||||||||||| || | ||| ||||||||||||||||||||||||| |||||||| ||||| | || |   || ||||||||||||||||||||||||||    
T  18815654 atggcaatttaaatactcattcaaatcagttttgtgctcttggagggttctcaaaaaattcatggacattcttatctattatttggatttcggtcttatt 18815753  T
Q  475 tactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttca-tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggtt 573  Q
    |  ||| | |||||| || ||||| || |||||| | || ||  ||  |||  ||  |||  |||||||||| ||| ||||||||||| | |||||||||    
T  18815754 tgttatctagaaagaccgtaacagtagaatttttaataatcattttcatcagcttacaag-acttcttgaaaaggttaaactccaaacatattggtggtt 18815852  T
Q  574 gaaagctaactacatt 589  Q
    |||||| |||||||||    
T  18815853 gaaagcgaactacatt 18815868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 375 - 475
Target Start/End: Original strand, 27990212 - 27990312
Alignment:
Q  375 atggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatt 474  Q
    ||||| |||||||| | ||| ||||||||||||||||||||||||| |||||||| |||||   || | | || ||||||||||||||||||||||||||    
T  27990212 atggcgatttatatactcattcaaatcagttttgtgctcttggagggttctcaaaaaattcaaggacaaccttctctattatttggatttcggtcttatt 27990311  T
Q  475 t 475  Q
    |    
T  27990312 t 27990312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 374 - 606
Target Start/End: Original strand, 45649421 - 45649653
Alignment:
Q  374 aatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttat 473  Q
    ||||| |||||||| || ||||| | ||| |||||||||||||||||||||||||| || |||  || || |||| |  ||||||||||||| || ||||    
T  45649421 aatggtaatttatactctcatgctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacaggatttacagttatttggatttctgttttat 45649520  T
Q  474 ttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggtt 573  Q
    |    || || |||||| | ||| |||| |||||||| || ||   || |||| | | || ||||||||||||| | ||||| |||| |||||||||| |    
T  45649521 tcgtcatttgaaaagatagaaactggagaatttttcagaatcactctgatcatcttggagctcttcttgaaaggattaaacttcaaatgttttggtggct 45649620  T
Q  574 gaaagctaactacattttgttcgttttttatta 606  Q
    |||||| || ||||||||||||| |||| ||||    
T  45649621 gaaagcgaattacattttgttcgattttgatta 45649653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 374 - 601
Target Start/End: Complemental strand, 47553251 - 47553024
Alignment:
Q  374 aatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttat 473  Q
    ||||| |||||||| || ||||| | ||| ||| ||||||||||||||||||| || || |||  || ||  ||| |  |||| |||||||| || ||||    
T  47553251 aatggtaatttatactctcatgctactcaatttagtgctcttggaggtttctctaaaaagtctaggacaggttttacagttatctggatttcagttttat 47553152  T
Q  474 ttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggtt 573  Q
    |    || ||||||||| | |||||||| |||||||| || ||  ||| |||| | || | ||| ||||||||| | ||||| ||||||||||||||| |    
T  47553151 tcgtcatttggaaagatagaaacaggagaatttttcagaatcattttgatcatcttgacgctctgcttgaaaggattaaacttcaaacgttttggtggct 47553052  T
Q  574 gaaagctaactacattttgttcgttttt 601  Q
    |||||| || ||||||||||||| ||||    
T  47553051 gaaagcgaattacattttgttcgatttt 47553024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 397 - 489
Target Start/End: Original strand, 8457467 - 8457559
Alignment:
Q  397 aaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaaga 489  Q
    |||||||||||||||||||||||| |||||||| |||||   || ||  || | |||||||||||||||||||||||||  ||| ||||||||    
T  8457467 aaatcagttttgtgctcttggagggttctcaaaaaattcaaggacagtcttctttattatttggatttcggtcttatttgttatctggaaaga 8457559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 20 - 276
Target Start/End: Complemental strand, 8865055 - 8864799
Alignment:
Q  20 acaaaagaggaatttcgggacgcaatgttttccatgcatccggacaagtgcccaggccttgacggctatagtccaggattttatcagcatttctggagtc 119  Q
    |||||||  |||||||| || || |||||||| ||||||||||| || || |||||  |||| || |  | ||| || || ||||| || || |||| |     
T  8865055 acaaaagctgaatttcgtgaagctatgttttcaatgcatccggataaatgtccaggtattgatggtttcaatcccggcttctatcaacaattttggaatt 8864956  T
Q  120 tatgcagtgatgatatttacaaagaatgttgtgcttggcttgatacagggcagttcccacctgatctcaatatgaaaaatattgcaattatacccaaagg 219  Q
    | || |||||||| ||||  ||||| |||||||||||||||||||| || || || ||  | ||| | |||||||  ||||||||  |||| || |||||    
T  8864955 tctgtagtgatgaaatttgtaaagagtgttgtgcttggcttgatacgggacaatttccttccgatttgaatatgacgaatattgctcttattcctaaagg 8864856  T
Q  220 caattccctacacagtatgaaggattggcgtccaatagctctctgtaatgtacttta 276  Q
     ||||| | ||| || ||||||||||||||||  ||||||||||| ||||| |||||    
T  8864855 gaattcgcaacatagcatgaaggattggcgtctgatagctctctgcaatgttcttta 8864799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 53 - 184
Target Start/End: Complemental strand, 17245265 - 17245134
Alignment:
Q  53 atgcatccggacaagtgcccaggccttgacggctatagtccaggattttatcagcatttctggagtctatgcagtgatgatatttacaaagaatgttgtg 152  Q
    |||||||||||||||||| | || | ||| ||||||| ||| || ||||||||||| || |||| | ||||||| || ||| |||  || ||||||||||    
T  17245265 atgcatccggacaagtgctccggtcctgatggctataatccgggtttttatcagcacttttggaatttatgcagcgacgatgtttttaaggaatgttgtg 17245166  T
Q  153 cttggcttgatacagggcagttcccacctgat 184  Q
    ||||| | ||||| || || ||||| ||||||    
T  17245165 cttggttagatacgggacaattccctcctgat 17245134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 29 - 164
Target Start/End: Original strand, 23160523 - 23160657
Alignment:
Q  29 gaatttcgggacgcaatgttttccatgcatccggacaagtgcccaggccttgacggctatagtccaggattttatcagcatttctggagtctatgcagtg 128  Q
    |||||||| || |||||||| |||||||| || || || ||||| |||| ||| || |||| ||| |  ||||| || |||||| | | | |||| ||||    
T  23160523 gaatttcgtgatgcaatgttctccatgcaccctgataaatgccccggccctgatggttataatcctgacttttaccaacatttccgaatt-tatgtagtg 23160621  T
Q  129 atgatatttacaaagaatgttgtgcttggcttgata 164  Q
    |||||||||  |||||||||||||||||||||||||    
T  23160622 atgatatttttaaagaatgttgtgcttggcttgata 23160657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 277 - 594
Target Start/End: Original strand, 22865911 - 22866228
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    |||||| ||||||||||||||| ||||||||   |||||| ||||||| ||  | |||||| |  | ||  | ||| | ||| | ||||| | ||| |||    
T  22865911 taaggaagaggaaagggatcatctgtttttcacttgtgatcattatgggcgactttggcttttaatttctcagtggcttggtatcgttacagctctgaat 22866010  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    || |||||||| || ||||| | ||| ||||||| |||||||||||||||||| || |||  || |   |||    |||| |||||||| || |||||      
T  22866011 ggtaatttatactctcatgctactcaattttgtggtcttggaggtttctcaaaaaagtctaggacaagttttagagttatctggatttcagttttattcg 22866110  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
      || ||||||||| | |||| ||| |||||||| || ||   || |||| | |||| ||||||||||||| | ||||| ||||||||||||||| ||||    
T  22866111 tcatttggaaagatagaaacatgagaatttttcagaatcattctgatcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggctgaa 22866210  T
Q  577 agctaactacattttgtt 594  Q
    ||| || |||||| ||||    
T  22866211 agcgaattacattatgtt 22866228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 450 - 589
Target Start/End: Complemental strand, 5196519 - 5196380
Alignment:
Q  450 ctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggt 549  Q
    |||||||||||||| ||| |||||||  ||| || ||||||| ||||||||| |||||||| ||  | |||| |||  | | ||  ||| | |||| |||    
T  5196519 ctattatttggattgcggccttatttgttatttgaaaagatcacaacaggagaatttttcacaattagattgatcagcttgcagcgcttgtagaaaaggt 5196420  T
Q  550 caaactccaaacgttttggtggttgaaagctaactacatt 589  Q
     |||||| |||||| |||||||||||||||  ||||||||    
T  5196419 taaactctaaacgtattggtggttgaaagcgcactacatt 5196380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 277 - 669
Target Start/End: Original strand, 10462300 - 10462692
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10462300 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgatatcggattggttaggttttgttacggttctcaat 10462399  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  10462400 ggcaatttatattcacatgcaaaccagatttgtgctcttggaggtttctcaaagaattctgtgaaagcatttactattatttggatttcggtcttattta 10462499  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10462500 ctatatggaaagatcgcaataggaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggttaaactccaaacgttttggtggttgaa 10462599  T
Q  577 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttttgg 669  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||    
T  10462600 agctaactacatattgttcgttttttattattcttattggagacaaaaccctttaccttgtttacagaatattttgtaaagtctgttttttgg 10462692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 277 - 670
Target Start/End: Original strand, 5825132 - 5825525
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5825132 taaggaggaggaaagggatcatttgttttttcgatgtgattattatggtaggttatggcttatgctatcggattggttaggttttgttacggttcttaat 5825231  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    |||||||||||||||||||| |||||||||||||| ||||| |||||||||||| ||| | || |||| |||||||||||||||||||||||||||||||    
T  5825232 ggcaatttatattcacatgctaatcagttttgtgcacttggcggtttctcaaagcattatgtgcaagctttttctattatttggatttcggtcttattta 5825331  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5825332 ctatttggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatctggaagtccttcttgaaagggtcaaactccaaacgttttggtggttgaa 5825431  T
Q  577 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttttggg 670  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| ||||||| | |||||| ||||||||||||||||||||    
T  5825432 agctaactacatattgttcgttttttattattcttattggaggcaaaatcctttacattgtttacaaactattgtgtaaagtctgttttttggg 5825525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 277 - 669
Target Start/End: Original strand, 6678739 - 6679131
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6678739 taaggaggaggaaagtgatcatttgttttttcaatgtgattattatggtcggttatggcttatgctatcggattggttaggtattgttacggttctcaat 6678838  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    | |||||| ||||||||||| |||||||||||||| ||||||||  |||||||| | ||| || |||| |||||||||||||||||||||||||||||||    
T  6678839 gacaatttttattcacatgctaatcagttttgtgcacttggaggagtctcaaagcactctgtgcaagctttttctattatttggatttcggtcttattta 6678938  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6678939 ctatttggaaagatcgtaacaggaggatttttcaaaaccaaattgttcatctggaagttcttcttgaaagggttaaactccaaacgttttggtggttgaa 6679038  T
Q  577 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttttgg 669  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||| | |||||| |||||||||||||||||||    
T  6679039 agctaactacatattgttcgttttttattattcttattggaggcaaaatcctttaccttgtttacagactattgtgtaaagtctgttttttgg 6679131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 277 - 584
Target Start/End: Complemental strand, 27891757 - 27891450
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    |||||||||||||||||| ||||||||||| ||||||||| |||||||||| ||||||||  || ||||| ||||||| ||| ||||||||||  |  ||    
T  27891757 taaggaggaggaaagggaccatttgttttttcaatgtgatcattatggtcgattatggctcttgatatcgaattggtttggtattgttacggtgtttcat 27891658  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    |||||| ||| ||||||||| ||||||||||||||||||||||| ||||||||||| |||  || | | ||| ||||||| ||||||| ||||||||||     
T  27891657 ggcaatatattttcacatgctaatcagttttgtgctcttggagggttctcaaagaagtctaggacatcttttactattatatggatttaggtcttatttg 27891558  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
     ||| ||||||||||||||||||||||||||||| ||||||||||  ||| |  ||| |||| |||||||||| ||||| ||||| | ||||||||||||    
T  27891557 ttatttggaaagatcgcaacaggaggatttttcagaaccaaattgaacatctcaaagctctttttgaaagggttaaacttcaaacttattggtggttgaa 27891458  T
Q  577 agctaact 584  Q
    ||| ||||    
T  27891457 agcaaact 27891450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 277 - 579
Target Start/End: Complemental strand, 11266084 - 11265782
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    |||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||  || | ||| ||||| | |||||||||||||| ||  |     
T  11266084 taaggaggaggaaagggaccatttgttttttcaatgtgactattatggtcggttatggctcttgatttcgaattggcttggttttgttacggtgctacac 11265985  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    || ||||||    ||||||| ||||||||||||||||||||||||||||||| ||| ||| ||||||| ||| ||||||||||||||||||||||||||     
T  11265984 ggaaatttaacaacacatgctaatcagttttgtgctcttggaggtttctcaaggaagtctatgaaagcttttactattatttggatttcggtcttatttg 11265885  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
     ||| ||||||||||| |||||||||||||||||  | ||  | | |||| | |||| ||| ||||||||||| ||||| ||||| | ||||||||||||    
T  11265884 ttatttggaaagatcgtaacaggaggatttttcagcatcatttggatcatcttgaagctctccttgaaagggttaaacttcaaacttattggtggttgaa 11265785  T
Q  577 agc 579  Q
    |||    
T  11265784 agc 11265782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 277 - 655
Target Start/End: Original strand, 31962835 - 31963213
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    |||||| ||||| ||||| ||||||||||| || |||||| ||||||| ||| | |||||| || | ||  | ||| | ||| |||||||| ||||  ||    
T  31962835 taaggaagaggatagggaccatttgttttttcattgtgatcattatggacggctttggcttttgatctcacagtggcttggtattgttacgattctacat 31962934  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    || |||||| |||| ||||| ||||| ||||||| ||||||||||||||||||||| |||  || ||  ||| ||||||||| |||||||||  |||||     
T  31962935 ggtaatttacattctcatgctaatcaattttgtggtcttggaggtttctcaaagaactctaggacaggttttactattatttcgatttcggtactatttg 31963034  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
      || |||||||| || |||||||| ||||||||  | || |||| |||| | |||| ||||||||||||||| ||| ||||||||| ||||||||||||    
T  31963035 tcatttggaaagaccgaaacaggagaatttttcagcatcacattgatcatctagaagctcttcttgaaagggttaaaatccaaacgtattggtggttgaa 31963134  T
Q  577 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaa 655  Q
    ||| || |||||  |||| | |||| | ||| | | |||||   |||||||||||  ||||||||| ||| ||||||||    
T  31963135 agcgaattacatcatgtttgattttgactatcccttttggacgaaaaaccctttagtttgtttaaagactgttttgtaa 31963213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 404 - 606
Target Start/End: Complemental strand, 38931701 - 38931499
Alignment:
Q  404 ttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggagga 503  Q
    |||||||||||||||||||||||||| || |||  || ||  ||| |  |||||||||||||||| ||||| |  || ||||||||| | |||||||| |    
T  38931701 ttttgtgctcttggaggtttctcaaaaaactctaggacaggttttacagttatttggatttcggttttattcatcatttggaaagatagaaacaggagaa 38931602  T
Q  504 tttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgtttttta 603  Q
    ||||||| || ||  ||| |||| | |||| ||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||| |||| |    
T  38931601 tttttcagaatcactttgatcatcttgaagctcttcttgaaagggttaaacttcaaacgttttggtggttgaaagcgaattacattttgttcgattttga 38931502  T
Q  604 tta 606  Q
    |||    
T  38931501 tta 38931499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 277 - 584
Target Start/End: Complemental strand, 29150364 - 29150057
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    |||||| |||||||| || ||||| ||||| ||||||||  ||||||| |||||||||||  || ||||  ||||  |  || ||||||||||| |  ||    
T  29150364 taaggacgaggaaagagaccatttattttttcaatgtgaccattatggccggttatggctcttgatatcacattgactctgtattgttacggttttacat 29150265  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    | ||||||| || | ||||| ||||||||||||||||| ||  | |||||||||| ||||  || ||| ||| ||||||||||||||| | |||||| |     
T  29150264 gacaatttaaatactcatgctaatcagttttgtgctctcggtagcttctcaaagagttctacgatagcgtttactattatttggattttgatcttatatg 29150165  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
     ||||||||||||||| || || |  ||||| ||||| ||  ||| |||| | |||| |||| |||||||||| ||||| ||||||| || |||||||||    
T  29150164 ttatatggaaagatcgaaagagaaaaattttccaaaatcactttgatcatcttgaagctcttattgaaagggttaaacttcaaacgtattcgtggttgaa 29150065  T
Q  577 agctaact 584  Q
    ||| ||||    
T  29150064 agcaaact 29150057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 590 - 666
Target Start/End: Complemental strand, 3998600 - 3998524
Alignment:
Q  590 ttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttt 666  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||| |||||||||||    
T  3998600 ttgttcgttttttattattcttattggagacaaaaccctttaccttgtttacagactgttttgtagagtctgttttt 3998524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 404 - 594
Target Start/End: Complemental strand, 8895316 - 8895126
Alignment:
Q  404 ttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggagga 503  Q
    |||||||||||||||||||||||||| ||||||  || ||  ||| |  ||||||||||||| || |||||    || ||||||||| | |||||||| |    
T  8895316 ttttgtgctcttggaggtttctcaaaaaattctaggacaggttttacagttatttggatttcagttttattcgtcatttggaaagatagaaacaggagaa 8895217  T
Q  504 tttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgtt 594  Q
    ||||||| || ||  | | |||| |  ||| ||||||||||||||| ||||| |||||| ||| |||||||||||| || |||||||||||    
T  8895216 tttttcagaatcacttagatcatcttaaagctcttcttgaaagggttaaacttcaaacggtttagtggttgaaagcgaattacattttgtt 8895126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 42762819 - 42762863
Alignment:
Q  235 tatgaaggattggcgtccaatagctctctgtaatgtactttataa 279  Q
    ||||||||||||||| || |||||||| |||||||||||||||||    
T  42762819 tatgaaggattggcgacctatagctctgtgtaatgtactttataa 42762863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 530 - 601
Target Start/End: Complemental strand, 29322599 - 29322528
Alignment:
Q  530 gaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttt 601  Q
    |||| ||||||||||||| | ||||| ||||||||||||||| ||||||| || || ||| |||||| ||||    
T  29322599 gaagctcttcttgaaaggattaaacttcaaacgttttggtggctgaaagcgaattatattatgttcgatttt 29322528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 281 - 666
Target Start/End: Original strand, 17153974 - 17154360
Alignment:
Q  281 gaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaatggca 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  17153974 gaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctattggattggttaggttttgttacggttctcaatgaca 17154073  T
Q  381 atttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactat 480  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  17154074 atttatattcacatgcaaatcagttttgcgctcttggaggtttctcaaagaattctttgaaagcatttactattatttggatttcagtcttatttactat 17154173  T
Q  481 atggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagct 580  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  17154174 atggaaagattgcaacaggaggattttccaaaaccaaattgttcatttggaagttctttttgaaagggtcaaactccaaacgttttggtggttgaaagct 17154273  T
Q  581 aactacattttgttcgttttttattattcttattggag-acaaaaccctttaccttgtttaaatactattttgtaaagtctgttttt 666  Q
    |||||| | ||||||||||||||||||||||||||||| | |||||||||||||||||||| | ||| |||||||||||||||||||    
T  17154274 aactacgtattgttcgttttttattattcttattggagaaaaaaaccctttaccttgtttacagactgttttgtaaagtctgttttt 17154360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 278 - 669
Target Start/End: Original strand, 53152249 - 53152640
Alignment:
Q  278 aaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaatg 377  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  53152249 aaggaggaggaaagagatcatttgttttttcaatgtgattattatggtcggttatggcttatgctatcggattggttaggtattgttacggttctcaatg 53152348  T
Q  378 gcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttac 477  Q
     |||||||||||||||||| |||||||||||||| |||||||| ||||||||| ||||| || |||| ||||||||||||||||||||||||||||||||    
T  53152349 acaatttatattcacatgctaatcagttttgtgcacttggaggattctcaaagcattctgtgcaagctttttctattatttggatttcggtcttatttac 53152448  T
Q  478 tatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaa 577  Q
    ||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  53152449 tatttggaaagatcgtaacaggaggatttttcaaaaccaaattgttcatctggaagttcttcttgaaagggttaaactccaaacgttttggtggttgaaa 53152548  T
Q  578 gctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttttgg 669  Q
    ||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||| | |||||| |||||||||||||||||||    
T  53152549 gctaactacatattgttcgtttttgattattcttattggaggcaaaaccctttaccttgtttacagactattgtgtaaagtctgttttttgg 53152640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 277 - 665
Target Start/End: Original strand, 23571784 - 23572172
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| | |||    
T  23571784 taaggaggaggaaagggatcatttgtttttccaatgcgattattatggtcggttatggcttttgctatcggattggttaggttttgctacggtttttaat 23571883  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    |||||||||||| ||||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||     
T  23571884 ggcaatttatatacacatgctaatcagttttgtgcttttggaggcttctcaaagaattctatgaaagcatttactattatttggatttcggtattatttt 23571983  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||    
T  23571984 ctatatggaaagatcgcaacaggaggattttccaaaaccaaattgttcatttggaagttctaattgaaagggtcaaacttcaaacgttttggtggttgaa 23572083  T
Q  577 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgtttt 665  Q
    |||||||| ||| |||||||||||||||||| ||||||||||||||||||| |||  ||||||| | ||| ||||||||||||| ||||    
T  23572084 agctaactgcatcttgttcgttttttattatccttattggagacaaaaccccttatgttgtttacagactgttttgtaaagtctctttt 23572172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 277 - 636
Target Start/End: Complemental strand, 3514743 - 3514384
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3514743 taaggaggaggaaagggatcatttgtttttccaatgcgattattatggtcgcttatggcttatgctatccgattggttaggttttgttacggttctcaat 3514644  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    |||||||||||| | ||||| ||||||||||| ||||| ||||||||||||||||||||| ||||||| ||| ||||||||||||| |||||||||| ||    
T  3514643 ggcaatttatatactcatgctaatcagttttgcgctctaggaggtttctcaaagaattctatgaaagcttttactattatttggatctcggtcttatata 3514544  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||| |||||| ||||| |||||||| |||||||| ||||||||||||||||||||    
T  3514543 ctatttggaaagatcgcaacaggaggattttccaaaaccaaattgttcttttggaggttctacttgaaagagtcaaacttcaaacgttttggtggttgaa 3514444  T
Q  577 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttg 636  Q
    |||||||||||| ||||||||||||||||| |||||||| ||| | || ||| |||||||    
T  3514443 agctaactacatcttgttcgttttttattactcttattgaagaaataatcctataccttg 3514384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 277 - 661
Target Start/End: Complemental strand, 9819119 - 9818733
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    |||||||||||| | ||||||||||||||||||||| || | ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9819119 taaggaggaggacaaggatcatttgtttttccaatgcgacttttatggtcgtttatggcttatgctatcggattggttaggttttgttatggttctcaat 9819020  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    |||||||||||||| ||||| ||||||||||| ||| | || |||||||||||||||| | ||||||| ||| |||| ||||||||||||||||||| ||    
T  9819019 ggcaatttatattctcatgctaatcagttttgcgctttaggtggtttctcaaagaattttatgaaagcttttactatcatttggatttcggtcttatata 9818920  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
    |||||||| ||||||||||||||||||||||||||||||||| || || |||||| ||||| |||||||| |||||||| ||||| | ||||||||||||    
T  9818919 ctatatgggaagatcgcaacaggaggatttttcaaaaccaaagtgctcttttggaggttctacttgaaagagtcaaacttcaaacatattggtggttgaa 9818820  T
Q  577 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttg--tttaaatactattttgtaaagtctg 661  Q
    |||||| ||||| |||||||||||||||||||| |||||||||   || | |||||||||  |||| | ||| ||||||||||||||    
T  9818819 agctaattacatcttgttcgttttttattattcgtattggagaattaatcatttaccttgtttttacagactgttttgtaaagtctg 9818733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 441 - 670
Target Start/End: Complemental strand, 32945786 - 32945557
Alignment:
Q  441 aagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttct 540  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  32945786 aagctttttctattatttggatttcggtcttatttactatttggaaagatcgtaacaggaggatttttcaaaaccaaattgttcatctggaagttcttct 32945687  T
Q  541 tgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgttta 640  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  32945686 tgaaagggtcaaactccaaacgttttggtggttgaaagttaactacatattgttcgttttttattattcttattggagacaaaaccttttaccttgttta 32945587  T
Q  641 aatactattttgtaaagtctgttttttggg 670  Q
     | |||||| ||||||||||||||||||||    
T  32945586 cagactattgtgtaaagtctgttttttggg 32945557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 277 - 665
Target Start/End: Complemental strand, 48547613 - 48547225
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggt-tctcaa 375  Q
    |||||||||||||||||| ||||||||||| ||||||||| |||||||||| ||||||||  || ||||| ||||||| ||| |||||||||| ||||||    
T  48547613 taaggaggaggaaagggaccatttgttttttcaatgtgatcattatggtcgattatggctcttgatatcgaattggtttggtattgttacggtgtctcaa 48547514  T
Q  376 tggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattt 475  Q
     |||||||||  ||||||||| ||||||||||||||||||||||||||||||||||| |||  || | | ||| ||||||| ||||||||||||||||||    
T  48547513 -ggcaatttaatttcacatgctaatcagttttgtgctcttggaggtttctcaaagaagtctaggacaacttttactattatatggatttcggtcttattt 48547415  T
Q  476 actatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttga 575  Q
      ||| ||||||||||||||||||||||||||||| ||||||||||  ||| | |||| |||| |||||||||| ||||| ||||| | |||||||||||    
T  48547414 gttatttggaaagatcgcaacaggaggatttttcagaaccaaattgaacatctcgaagctctttttgaaagggttaaacttcaaacttattggtggttga 48547315  T
Q  576 aagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgtttt 665  Q
    |||| |||| |||   ||||| |||| ||||| ||| |||||||||||| || |||| ||||||| | ||| |  ||||| |||||||||    
T  48547314 aagcaaacttcatcacgttcgcttttgattatcctttttggagacaaaatccgttacattgtttacagactgtcatgtaatgtctgtttt 48547225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 276 - 666
Target Start/End: Complemental strand, 42462780 - 42462390
Alignment:
Q  276 ataaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaa 375  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| || ||||  ||||  | |||||||||||| |  |  |    
T  42462780 ataaggaggaggaaagagatcatttgttttttcaatgtgattattatggtcggttatggcttttgatatcaaattgacttggttttgttacgatgtttca 42462681  T
Q  376 tggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattt 475  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||| || |||||||||| | ||||||  ||| ||||||||||||||||||||||||||    
T  42462680 tggcaatttatatacacatgctaatcagttttgtgctcttggaggcttttcaaagaattatatgaaaggttttactattatttggatttcggtcttattt 42462581  T
Q  476 actatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttga 575  Q
      ||| || ||||||||||||| ||||||||| |||||||| |    |||| | |||| ||||||||||||||| ||||| ||||| |||||||||||||    
T  42462580 gttatttgaaaagatcgcaacatgaggattttccaaaaccatacgaatcatcttgaagctcttcttgaaagggttaaacttcaaactttttggtggttga 42462481  T
Q  576 aagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttt 666  Q
    ||||||||| |||  |||||| |||| ||||| |   |||||||||||| |  |||  ||||||| | ||| | |||||| ||||||||||    
T  42462480 aagctaacttcatcatgttcgcttttgattatcccatttggagacaaaatctcttatgttgtttatagactgtcttgtaatgtctgttttt 42462390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 277 - 663
Target Start/End: Complemental strand, 23603322 - 23602936
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    ||||||||||||||| |||||| ||||||| |||||||||| |||||||||  |||||||  || | ||| ||||| | ||||||||||||||  |  ||    
T  23603322 taaggaggaggaaagagatcatctgttttttcaatgtgatttttatggtcgactatggctcttggtttcgaattggcttggttttgttacggtgtttcat 23603223  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    |||||||||||| | ||||| | ||||||||||||||||||||| || |||||||||||| |||||||  | |||||||||||||||||| | ||||||     
T  23603222 ggcaatttatatcctcatgctattcagttttgtgctcttggaggattttcaaagaattctatgaaagctctgtctattatttggatttcgattttatttg 23603123  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
     ||| |||||||||||||||  || |||||| |||||| | || | |||| | |||| ||||||||||| ||| ||||| ||||| ||||||||| ||||    
T  23603122 ttatttggaaagatcgcaacttgaagattttccaaaacaatatggatcatcttgaagctcttcttgaaaaggttaaacttcaaaccttttggtggatgaa 23603023  T
Q  577 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgtt 663  Q
    ||| |||| |||    |||  |||| ||||| | | |||||||||||| ||||||  ||||||| | ||| || ||||| |||||||    
T  23603022 agcaaactccatcaccttcagttttgattatcccttttggagacaaaatcctttatgttgtttacagactgttatgtaatgtctgtt 23602936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 277 - 630
Target Start/End: Complemental strand, 8595316 - 8594963
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||  || ||||  ||| | | ||||||||||||||  |  ||    
T  8595316 taaggaggaggaaagggaccatttgttttttcaatgtgattattatggtcgtttatggctcttgatatcaaattcgcttggttttgttacggtgtttcat 8595217  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    | ||||||| || | ||||| || || |||||||| |||||| |||| ||||||| ||||  |||||| || |||||| ||||||||||||| ||||||     
T  8595216 gtcaatttacatacccatgctaaccaattttgtgcccttggatgtttttcaaagagttctacgaaagctttgtctattgtttggatttcggttttatttg 8595117  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
     ||| |||||||||||||| | || |||||| |||||||| || | | || | |||| ||||||||||| ||| ||||| ||||| ||||||||| ||||    
T  8595116 ttatttggaaagatcgcaatatgaagattttccaaaaccatatgggttatcttgaagctcttcttgaaaaggttaaacttcaaaccttttggtggatgaa 8595017  T
Q  577 agctaactacattttgttcgttttttattattcttattggagacaaaacccttt 630  Q
    |||  ||| ||||  ||||  |||| ||||| | | |||||||||||| |||||    
T  8595016 agcacacttcattacgttcaattttgattatcccttttggagacaaaatccttt 8594963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 541 - 666
Target Start/End: Complemental strand, 44879790 - 44879665
Alignment:
Q  541 tgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgttta 640  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  44879790 tgaaagggtcaaacttcaaacgttttggtggttgaaaactaactacatattgttcgtttttgattattcttattggagacaaaatcctttaccttgttta 44879691  T
Q  641 aatactattttgtaaagtctgttttt 666  Q
     ||||| |||||||||||||||||||    
T  44879690 catactgttttgtaaagtctgttttt 44879665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 464 - 662
Target Start/End: Complemental strand, 9246901 - 9246703
Alignment:
Q  464 tcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgt 563  Q
    |||||||||| |||||| | |||||||| |||||||||||| || |||||||||| ||||| |||||| ||||| |||||||| |||||||| ||||| |    
T  9246901 tcggtcttatatactatttagaaagatcacaacaggaggatattccaaaaccaaagtgttcttttggaggttctacttgaaagagtcaaacttcaaacat 9246802  T
Q  564 tttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgt 662  Q
     |||||||||||||||||| ||||| |||||||||||| ||||||| |||||||||   || ||||||||||||||| |  || |||||||||||||||    
T  9246801 attggtggttgaaagctaattacatcttgttcgtttttgattattcgtattggagaattaatcctttaccttgtttacaggctgttttgtaaagtctgt 9246703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 375 - 577
Target Start/End: Complemental strand, 30737449 - 30737247
Alignment:
Q  375 atggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatt 474  Q
    ||||| ||||| || ||||||| |||||||||||| |||||||||||||||||||||| |||  || | | ||| ||||||| |||||||||||||||||    
T  30737449 atggcgatttacatacacatgcgaatcagttttgtactcttggaggtttctcaaagaactctaggacaacttttactattatatggatttcggtcttatt 30737350  T
Q  475 tactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttg 574  Q
    |  |||||| ||||||||||| ||||| ||||| ||||| || |||| |||| | |||| ||||||||||||||| ||||| ||||||| ||||||||||    
T  30737349 tgttatatgaaaagatcgcaagaggagaattttccaaaatcacattgatcatcttgaagctcttcttgaaagggttaaacttcaaacgtattggtggttg 30737250  T
Q  575 aaa 577  Q
    |||    
T  30737249 aaa 30737247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 460 - 588
Target Start/End: Complemental strand, 8542381 - 8542253
Alignment:
Q  460 gatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaa 559  Q
    ||||| ||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||| |||| |||||| ||||||||||||||| ||||| | |    
T  8542381 gattttggtcttatttactatattgaaagatcgtaacaggaggattttccaaaaccaaattgatcatctggaagctcttcttgaaagggttaaacttcga 8542282  T
Q  560 acgttttggtggttgaaagctaactacat 588  Q
    |||||||||||||||||||||||||||||    
T  8542281 acgttttggtggttgaaagctaactacat 8542253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 296 - 630
Target Start/End: Original strand, 42459474 - 42459807
Alignment:
Q  296 catttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatg 395  Q
    ||||| ||||| ||||||||  ||||||| |||||||||||  || ||||| | ||| | ||| ||||||||||| |  |||| |||||| |||| ||||    
T  42459474 catttattttttcaatgtgaccattatggacggttatggctcttggtatcgcagtggcttggtattgttacggttttacatggtaatttacattctcatg 42459573  T
Q  396 caaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaa 495  Q
    | ||||||||||||||||| || || ||||||| || || | ||  ||| ||| |||||||||||||||||||||||| |  ||||||||||||||||||    
T  42459574 ctaatcagttttgtgctctcggtggcttctcaaggagttatatgttagcgtttactattatttggatttcggtcttatatgttatatggaaagatcgcaa 42459673  T
Q  496 caggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttc 595  Q
    ||||| || ||||||||| ||  ||| |||| | |||| |||| | | |||||| ||||| ||||||| ||||||||||||||| ||||  ||   ||||    
T  42459674 cagga-gaattttcaaaatcattttgatcatcttgaagctcttatggtaagggttaaacttcaaacgtattggtggttgaaagcaaactttatcacgttc 42459772  T
Q  596 gttttttattattcttattggagacaaaacccttt 630  Q
    |||||| | | | ||| |||||||||||| |||||    
T  42459773 gtttttgactgtcctttttggagacaaaatccttt 42459807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 277 - 618
Target Start/End: Complemental strand, 10754122 - 10753781
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    |||||| ||||||||||||||| ||||||| |  |||||| ||||||||||  | |||||| || | ||  | ||| | || ||||||||   | | |||    
T  10754122 taaggaagaggaaagggatcatctgttttttctttgtgatcattatggtcgtctttggcttttgatttcacagtggcttggatttgttaccactttgaat 10754023  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    || |||||| ||||||||||    || ||||| |||||||||||||| || || || ||| ||| ||  ||| ||||||||||||||||||| ||||||     
T  10754022 ggtaatttacattcacatgcttcccaattttgcgctcttggaggtttttcgaaaaaatctgtgacaggttttactattatttggatttcggttttatttg 10753923  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
      |||||||| ||| | ||||| || ||||||||  | ||| ||| |||  | |||||||||||||||||||| |||||||| |||||||||||||||||    
T  10753922 tcatatggaaggatagaaacagaagaatttttcagcaacaatttgatcagcttgaagttcttcttgaaagggttaaactccagacgttttggtggttgaa 10753823  T
Q  577 agctaactacattttgttcgttttttattattcttattggag 618  Q
    ||| || ||||| ||||||| |||| | ||| ||||||||||    
T  10753822 agcgaattacatcttgttcgattttgactatccttattggag 10753781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 277 - 661
Target Start/End: Original strand, 39632995 - 39633379
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    |||||| ||||||||||||||| ||||||| || |||||  ||||||||||  | |||||  || | ||  ||||| | ||| |||||||   | | |||    
T  39632995 taaggaagaggaaagggatcatctgttttttcattgtgaccattatggtcgactttggctcttgatttctcattggcttggtattgttacaactttgaat 39633094  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    || |||||| ||||||||||   | | |||||||||||||| ||||| || || || |||  || ||  ||| ||||||||||||||||  | |||||      
T  39633095 ggtaatttacattcacatgcttcttaattttgtgctcttgggggtttttcgaaaaactctaggacaggttttactattatttggatttcaattttattcg 39633194  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
      || ||||||||| | ||||| || ||||||||  | ||  ||| |||| | |||| ||| ||||||||||| ||||||||||||||||||||||||||    
T  39633195 tcatttggaaagatagaaacagcagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaacgttttggtggttgaa 39633294  T
Q  577 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctg 661  Q
    ||| || |||||  |||||| |||| | ||| | |||||||| ||||| ||||||| ||||||| | |||  ||||||| |||||    
T  39633295 agcgaattacatcatgttcgattttgactatccctattggaggcaaaatcctttactttgtttacaaactgctttgtaatgtctg 39633379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 277 - 601
Target Start/End: Complemental strand, 16664035 - 16663711
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    |||||| |||||||||||||||||||||||  | |||||| ||||||| ||  | |||||| |  | ||  | ||| | | | |||||||   ||| |||    
T  16664035 taaggaagaggaaagggatcatttgttttttaattgtgatcattatgggcgactttggcttttaatttctcagtggcttgttattgttacaactctgaat 16663936  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    || |||||||| || ||||| | ||| |||||||||||||||||||||||||| |  |||  || ||  ||| |  |||| |||||||| || |||||      
T  16663935 ggtaatttatactctcatgctactcaattttgtgctcttggaggtttctcaaaaatgtctaggacaggttttacagttatctggatttcagttttattcg 16663836  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
      || ||||||||| | ||||| || |||||||| || ||| ||| |||| | |||| ||||||||||||| | ||||| ||||||||||||||| ||||    
T  16663835 tcatttggaaagatagaaacagaagaatttttcagaatcaatttgatcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggctgaa 16663736  T
Q  577 agctaactacattttgttcgttttt 601  Q
    ||| || |||||| |||||| ||||    
T  16663735 agcgaattacattatgttcgatttt 16663711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 374 - 601
Target Start/End: Complemental strand, 52196249 - 52196022
Alignment:
Q  374 aatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttat 473  Q
    ||||| |||||||| || ||||| | ||| |||||||||||||||||||||||||| || |||  || || |||| |  |||| |||||||| || ||||    
T  52196249 aatggtaatttatactctcatgctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacaggatttacagttatctggatttctgttttat 52196150  T
Q  474 ttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggtt 573  Q
    |    || ||||||||| | ||||| || |||||||| || ||   || |||| | |||| ||||||||||||| | ||||| ||||||||||||||| |    
T  52196149 tcgtcatttggaaagatagaaacagaagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggct 52196050  T
Q  574 gaaagctaactacattttgttcgttttt 601  Q
    |||||| || |||||| |||||| ||||    
T  52196049 gaaagcaaattacattatgttcgatttt 52196022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 53 - 184
Target Start/End: Original strand, 8563350 - 8563481
Alignment:
Q  53 atgcatccggacaagtgcccaggccttgacggctatagtccaggattttatcagcatttctggagtctatgcagtgatgatatttacaaagaatgttgtg 152  Q
    |||||||||||||| ||  | |||| ||| || |||||||| || ||||| || ||||| |||  | ||||||| ||||| || | ||| ||||||||||    
T  8563350 atgcatccggacaaatgttccggccctgatggttatagtccgggtttttaccaacatttttggcatttatgcagcgatgacatcttcaaggaatgttgtg 8563449  T
Q  153 cttggcttgatacagggcagttcccacctgat 184  Q
     ||||||||| ||||| ||||| |||||||||    
T  8563450 gttggcttgacacaggacagtttccacctgat 8563481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 542 - 619
Target Start/End: Complemental strand, 52962710 - 52962633
Alignment:
Q  542 gaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggaga 619  Q
    |||| ||| ||||||||| |||||||||||||||||    ||||||||||||||| |||| |||| ||| ||||||||    
T  52962710 gaaaaggttaaactccaatcgttttggtggttgaaattgtactacattttgttcgattttgattactctgattggaga 52962633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 449 - 489
Target Start/End: Complemental strand, 28393405 - 28393365
Alignment:
Q  449 tctattatttggatttcggtcttatttactatatggaaaga 489  Q
    |||||||||||||||||||||||||||  ||| ||||||||    
T  28393405 tctattatttggatttcggtcttatttgttatctggaaaga 28393365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 277 - 669
Target Start/End: Original strand, 2959753 - 2960145
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    |||||||||||| || || ||||| || || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||  ||||||    
T  2959753 taaggaggaggacagagaccatttattctttcaatgtgattattatggtcggttatggcttatgctatcagattggttaggttttgtcacggcgctcaat 2959852  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    || || |||||||||||||| |||||||||||||| |||||||| ||||||||| ||||| || || | ||||||||||||||||||||||||||||||     
T  2959853 ggaaacttatattcacatgctaatcagttttgtgcacttggaggattctcaaagcattctatgtaaactttttctattatttggatttcggtcttatttt 2959952  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
    |||| ||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2959953 ctatttggaaagatcgtaacaggaggatttttcaaaacgaaattgttcatatggaagttcttcttgaaagggtcaaacttcaaacgttttggtggttgaa 2960052  T
Q  577 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttttgg 669  Q
    ||| |||||||| |||||||||||| |||||||||||||||| |||||||| ||| |||||||| | |||||| |||||||||||||||||||    
T  2960053 agcgaactacatattgttcgtttttgattattcttattggaggcaaaacccattatcttgtttacaaactattgtgtaaagtctgttttttgg 2960145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 277 - 666
Target Start/End: Original strand, 26077889 - 26078278
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||    
T  26077889 taaggaggaggaaagggatcatttgtttttccaatgcgaatattatggtcgcttatggcttatgttatccgattggttaggttttgttacggttctcaat 26077988  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    |||||||||||| | ||||| ||||||||||| ||||| ||||| ||||||||||||||| ||||||| ||||||||||||||||| |||||||||| ||    
T  26077989 ggcaatttatatactcatgctaatcagttttgcgctctaggagggttctcaaagaattctatgaaagctttttctattatttggatctcggtcttatata 26078088  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
    |||| |||||||||||||||||||||||||| || ||||| ||||||| |||||| |||||||||||||| |||||||| ||||||||||||||||||||    
T  26078089 ctatttggaaagatcgcaacaggaggattttccataaccatattgttcttttggatgttcttcttgaaagagtcaaacttcaaacgttttggtggttgaa 26078188  T
Q  577 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttt 666  Q
    |||||||||||| |||||||||||| |||| |||||||||||| | || |||||| |||| ||| | ||| | |||||||||||||||||    
T  26078189 agctaactacatcttgttcgtttttgattactcttattggagaaataatcctttagcttgcttacagactgtgttgtaaagtctgttttt 26078278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 329 - 665
Target Start/End: Original strand, 31423430 - 31423766
Alignment:
Q  329 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaa 428  Q
    ||||||||  || ||||| ||||||| ||| ||||||||||  |  | | ||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  31423430 ttatggctcttgatatcgaattggtttggtattgttacggtgtttcacgacaatttaaattcacatgctaatcagttttgtgctcttggaggtttctcaa 31423529  T
Q  429 agaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcattt 528  Q
    |||| |||  || | | ||| ||||||| ||||||||||||||||||  ||| || ||||||||||||||||||||||| ||||||||||||| |||| |    
T  31423530 agaactctaggacaacttttactattatatggatttcggtcttatttgttatttgaaaagatcgcaacaggaggattttccaaaaccaaattgatcatct 31423629  T
Q  529 ggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccct 628  Q
     |||| |||| |||||||||| ||||| ||||| | ||||||||||||||| |||| ||    ||||| |||| | ||| | | |||||||||||| ||     
T  31423630 cgaagctctttttgaaagggttaaacttcaaacttattggtggttgaaagcaaacttcagcacgttcgcttttgactatcccttttggagacaaaatcca 31423729  T
Q  629 ttaccttgtttaaatactattttgtaaagtctgtttt 665  Q
    |||  ||||||| | |||||  ||||| |||||||||    
T  31423730 ttatgttgtttacagactatcatgtaatgtctgtttt 31423766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 277 - 624
Target Start/End: Original strand, 26390405 - 26390751
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    ||||||||| |||||||  |||||||| || ||||| ||| ||||||||||  | || ||  || ||||| ||||  | ||| ||||||||||| |  ||    
T  26390405 taaggaggacgaaaggggccatttgttctttcaatgcgatcattatggtcgactttg-ctcttgatatcgcattgacttggtattgttacggttttacat 26390503  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    ||||| ||  ||  |||||| || ||||||||||| || || ||||||||||||||||||  || | | ||| |||||||||||| ||| |||||||||     
T  26390504 ggcaaattgcatatacatgctaaccagttttgtgccctcggtggtttctcaaagaattctaggacaacttttactattatttggacttctgtcttatttg 26390603  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
     |||||||||||||||||||||||| ||||| ||||| || | || |||| | || | ||||||||||||| | || || ||||||||||||||||||||    
T  26390604 ttatatggaaagatcgcaacaggagaattttccaaaatcacagtgatcatctagaggctcttcttgaaaggattaagcttcaaacgttttggtggttgaa 26390703  T
Q  577 agctaactacattttgttcgttttttattattcttattggagacaaaa 624  Q
    |||  |||  ||  |||||| |||| ||||||| | ||||||||||||    
T  26390704 agcacactttatcatgttcgcttttgattattccttttggagacaaaa 26390751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 391 - 640
Target Start/End: Complemental strand, 29530118 - 29529870
Alignment:
Q  391 acatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagat 490  Q
    |||||| |||||||||||||| |||| |||||||||||||||||||  || | | ||| ||||||| |||| ||| |||||||||  |||||||||||||    
T  29530118 acatgctaatcagttttgtgcccttgtaggtttctcaaagaattctaggacaac-tttcctattatctggacttctgtcttatttgttatatggaaagat 29530020  T
Q  491 cgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattt 590  Q
    || ||||| || ||||| ||||| || | || |||| | || | ||||||||||||||| || || ||||| ||||||||||||||||| ||||  ||      
T  29530019 cgtaacagaagaattttccaaaatcacagtgatcatctagatgctcttcttgaaagggttaagcttcaaacattttggtggttgaaagcaaactttatca 29529920  T
Q  591 tgttcgttttttattattcttattggagacaaaaccctttaccttgttta 640  Q
    |||||| |||| ||||||| | || ||||||||| ||||||  |||||||    
T  29529919 tgttcgcttttgattattccttttagagacaaaatcctttaagttgttta 29529870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 374 - 601
Target Start/End: Original strand, 10801940 - 10802168
Alignment:
Q  374 aatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctc-aaagaattctttgaaagcattttctattatttggatttcggtctta 472  Q
    ||||| |||||||| || ||||| | ||| ||| ||||||||||||||||||| ||| || |||  || ||  ||| |  |||| |||||||| || |||    
T  10801940 aatggtaatttatactctcatgctactcaatttagtgctcttggaggtttctctaaaaaagtctaggacaggttttacagttatctggatttcagtttta 10802039  T
Q  473 tttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggt 572  Q
    ||    || ||||||||| | |||||||| |||||||| || ||   || |||| | || | ||| ||||||||| | ||||| |||||||||||||||     
T  10802040 ttcgtcatttggaaagatagaaacaggagaatttttcagaatcattctgatcatcttgacgctctgcttgaaaggattaaacttcaaacgttttggtggc 10802139  T
Q  573 tgaaagctaactacattttgttcgttttt 601  Q
    ||||||| || |||||| |||||| ||||    
T  10802140 tgaaagcgaattacattatgttcgatttt 10802168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 53 - 184
Target Start/End: Complemental strand, 29338680 - 29338549
Alignment:
Q  53 atgcatccggacaagtgc-ccaggccttgacggctatagtccaggattttatcagcatttctggagtctatgcagtgatgatatttacaaagaatgttgt 151  Q
    |||||| ||||||||||| |||| ||| || ||||||||||| || ||||||||||| || |||| | ||||||| || ||| |||  || |||||||||    
T  29338680 atgcattcggacaagtgctccagtcct-gatggctatagtccgggtttttatcagcacttttggaatttatgcagcgacgatgtttttaaggaatgttgt 29338582  T
Q  152 gcttggcttgatacagggcagttcccacctgat 184  Q
    |||||| | ||||| || || ||||| ||||||    
T  29338581 gcttggttagatacgggacaattccctcctgat 29338549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 276 - 323
Target Start/End: Complemental strand, 29532417 - 29532370
Alignment:
Q  276 ataaggaggaggaaagggatcatttgtttttccaatgtgattattatg 323  Q
    |||||||||||||||||||||||||||| || ||||| ||| ||||||    
T  29532417 ataaggaggaggaaagggatcatttgttctttcaatgcgatcattatg 29532370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 277 - 664
Target Start/End: Original strand, 18295559 - 18295946
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  18295559 taaggaggaggaaagggatcatttgtttttccaatgcgattattatggtcgattatggcttatgctatcagattggttaggttttgttatggttctcaat 18295658  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    |||||||||||| |  |||| ||||||||||| ||||| ||||||||||||||||||||| ||||||| ||| ||||||||||||| |||| ||||| ||    
T  18295659 ggcaatttatatactaatgctaatcagttttgcgctctaggaggtttctcaaagaattctatgaaagcttttactattatttggatctcggccttatata 18295758  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||| |||||| |||||  ||||||| |||||||| ||||||||||||||||||||    
T  18295759 ctatatggaaagatcgcaacaagaggattttccaaaaccaaattgttcttttggaggttctatttgaaagagtcaaacttcaaacgttttggtggttgaa 18295858  T
Q  577 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttt 664  Q
    |||||||||||| |||||||||||| |||| |||||||||||| | || ||||||||||||||| | ||| | |||||||||||||||    
T  18295859 agctaactacatcttgttcgtttttgattactcttattggagaaataatcctttaccttgtttacagactgtgttgtaaagtctgttt 18295946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 281 - 666
Target Start/End: Complemental strand, 2894292 - 2893907
Alignment:
Q  281 gaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaatggca 380  Q
    |||||||| | |||||||||||||||||||||  | ||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  2894292 gaggaggacatggatcatttgtttttccaatgcaactattatggtcgtttatggcttatgatttcggattggttaggttttgttacggttctcaatggca 2894193  T
Q  381 atttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactat 480  Q
    |||||||||| |||||  |||||||||| ||||| || || ||||||||||||||| || |||| ||| |||| ||||||||||||||||||| ||||||    
T  2894192 atttatattctcatgctcatcagttttgcgctctaggtgggttctcaaagaattctatgcaagcttttactatcatttggatttcggtcttatatactat 2894093  T
Q  481 atggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagct 580  Q
    ||| ||||| ||||||||||||||||| ||||| |||| || || ||||||  |||| |||||||| |||||||||||||| | |||||| |||||||||    
T  2894092 atgaaaagaccgcaacaggaggattttccaaaatcaaagtgctcttttggagtttctacttgaaagagtcaaactccaaacatattggtgtttgaaagct 2893993  T
Q  581 aactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttt 666  Q
    || | ||| |||||||||||||||||||| |||||||||   || ||||||||||||||| | ||| |||||||||||||||||||    
T  2893992 aatttcatcttgttcgttttttattattcgtattggagaattaatcctttaccttgtttacagactgttttgtaaagtctgttttt 2893907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 277 - 667
Target Start/End: Original strand, 28605050 - 28605440
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    ||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||  || ||||| ||||||| ||| ||||||| ||  |  ||    
T  28605050 taaggaggaggaaagagaccatttgtttttccaatgtgatcattatggtcggttatggctcttgatatcgaattggtttggtattgttactgtgtttcat 28605149  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    |||||| ||| |||||||||  |||||||||||||||||||||| ||||| ||||| ||| ||| ||| ||| ||||||||||||||||||||||||||     
T  28605150 ggcaatctattttcacatgctcatcagttttgtgctcttggagggttctccaagaagtctatgacagcttttactattatttggatttcggtcttatttg 28605249  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
     ||| ||||||||||| ||||||||||||||||| ||||||| ||  ||| | |||| |||| |||||||||| ||||| || |  | |||| |||||||    
T  28605250 ttatttggaaagatcgtaacaggaggatttttcagaaccaaaatgaacatcttgaagctctttttgaaagggttaaacttcagaattattggcggttgaa 28605349  T
Q  577 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgtttttt 667  Q
    ||| |||| | |  |||||| |||| | ||||||| |||||||||||||||||||| ||||||| | ||| |  ||||| |||||||||||    
T  28605350 agcaaacttcgtcatgttcgcttttgactattctttttggagacaaaaccctttacattgtttacagactgtcatgtaatgtctgtttttt 28605440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 377 - 584
Target Start/End: Complemental strand, 667222 - 667016
Alignment:
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    ||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||| | ||||||| ||| ||||||||||||||||||||||||||     
T  667222 ggcaatttaaatacacatgctaatcagttttgtgctcttggaggtttctcaaagaattatatgaaagcttttactattatttggatttcggtcttatttg 667123  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
     |||||||||||||||||||||||||||||| |||||||| || | |||||| |||| |||||||||||| ||  |||| ||||  | ||||||||||||    
T  667122 ttatatggaaagatcgcaacaggaggattttccaaaaccatatggatcattttgaagctcttcttgaaagcgt-taacttcaaagatattggtggttgaa 667024  T
Q  577 agctaact 584  Q
    ||| ||||    
T  667023 agcaaact 667016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 374 - 601
Target Start/End: Original strand, 5391777 - 5392004
Alignment:
Q  374 aatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttat 473  Q
    ||||| |||||||| || ||||| | ||| |||||||||||||||||||||||||| || |||  || || |||| |  |||| |||||||| || ||||    
T  5391777 aatggtaatttatactctcatgctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacaggatttacagttatatggatttctgttttat 5391876  T
Q  474 ttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggtt 573  Q
    |    || ||||||||| | |||||||| |||||||| || ||   || |||| | |||| ||||||||||||| | ||||| ||||||||||||||| |    
T  5391877 tcgtcatttggaaagatagaaacaggagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggct 5391976  T
Q  574 gaaagctaactacattttgttcgttttt 601  Q
    |||||| || ||||||||||||| ||||    
T  5391977 gaaagcgaattacattttgttcgatttt 5392004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 450 - 589
Target Start/End: Complemental strand, 17227814 - 17227675
Alignment:
Q  450 ctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggt 549  Q
    ||||||||||||||||||| ||||||  ||| ||||||||||||||||  || ||||||||||| || |||| | |  | | || ||||||| |||||||    
T  17227814 ctattatttggatttcggtgttatttgttatttggaaagatcgcaacaaaagaatttttcaaaatcacattgattagcttgcagctcttcttaaaagggt 17227715  T
Q  550 caaactccaaacgttttggtggttgaaagctaactacatt 589  Q
     ||||||||||||| ||||||||||||||| |||| ||||    
T  17227714 taaactccaaacgtattggtggttgaaagcgaacttcatt 17227675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 450 - 584
Target Start/End: Original strand, 7218686 - 7218820
Alignment:
Q  450 ctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggt 549  Q
    |||| |||||||||||||| |||| |  |||||||||||||||||| ||||| || |||||||| ||  |||||||| | |||| |||| | |||| |||    
T  7218686 ctatcatttggatttcggttttatatgttatatggaaagatcgcaataggagaatatttcaaaaacaggttgttcatcttgaagctcttttggaaaaggt 7218785  T
Q  550 caaactccaaacgttttggtggttgaaagctaact 584  Q
     ||||| ||| ||| ||||||||||||||| ||||    
T  7218786 taaacttcaagcgtattggtggttgaaagcaaact 7218820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 390 - 588
Target Start/End: Original strand, 9759779 - 9759977
Alignment:
Q  390 cacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaaga 489  Q
    ||||||| || || |||||| |||||||||||||||||||||| |||  ||  |  ||| ||  ||| |||||||||   ||||||  ||| ||||||||    
T  9759779 cacatgctaaccaattttgtcctcttggaggtttctcaaagaactctaggacgggctttactgctatatggatttcgacattatttgttatttggaaaga 9759878  T
Q  490 tcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 588  Q
    ||| |||||||| || |||||||| ||||||| |||| | || | ||||||||  ||||| ||||| |||| || ||||||||||||||| || |||||    
T  9759879 tcgtaacaggagaatatttcaaaatcaaattgatcatcttgatgctcttcttgggagggttaaacttcaaatgtattggtggttgaaagcgaattacat 9759977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 450 - 601
Target Start/End: Original strand, 14223505 - 14223656
Alignment:
Q  450 ctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggt 549  Q
    ||||||||||||||| |||||||| |  ||||||||| |||||||||| ||| ||||| | ||| ||  ||| |||| |||||| |||| | |||| |||    
T  14223505 ctattatttggattttggtcttatatgttatatggaatgatcgcaacaagagaattttccgaaatcactttgatcatctggaagctcttatggaaacggt 14223604  T
Q  550 caaactccaaacgttttggtggttgaaagctaactacattttgttcgttttt 601  Q
     ||||| ||||||| ||||||||| ||||| |||| |||   ||||||||||    
T  14223605 taaacttcaaacgtattggtggttaaaagcaaacttcatcacgttcgttttt 14223656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 277 - 327
Target Start/End: Complemental strand, 667334 - 667284
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcg 327  Q
    ||||||||||||||||||  |||||||||| |||||||| |||||||||||    
T  667334 taaggaggaggaaagggactatttgttttttcaatgtgactattatggtcg 667284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 277 - 336
Target Start/End: Original strand, 7218513 - 7218572
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggct 336  Q
    ||||||||||||||| || ||||| ||||||||||||||| |||| ||  ||||||||||    
T  7218513 taaggaggaggaaagagaccatttatttttccaatgtgatcattacgggtggttatggct 7218572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 174
Target Start/End: Original strand, 26904862 - 26904989
Alignment:
Q  47 ttttccatgcatccggacaagtgcccaggccttgacggctatagtccaggattttatcagcatttctggagtctatgcagtgatgatatttacaaagaat 146  Q
    ||||| |||||||||||||||||  |||||| ||| || || | |||  | || ||||| ||||| |||| | | || || |||||||||| ||||||||    
T  26904862 ttttcaatgcatccggacaagtgttcaggccctgatggatacaatcctagtttctatcaacatttttggaatttgtgtagcgatgatattttcaaagaat 26904961  T
Q  147 gttgtgcttggcttgatacagggcagtt 174  Q
    ||||||||||| | || || ||||||||    
T  26904962 gttgtgcttggttagaaacggggcagtt 26904989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 277 - 588
Target Start/End: Original strand, 41342971 - 41343282
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||| | |||    
T  41342971 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttttgctatcggattggcttggttttgttacggtttttaat 41343070  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    |||||||||||| || |||| ||||||||||| ||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  41343071 ggcaatttatatacaaatgctaatcagttttgcgctcttggaggcttctcaaagaattctatgaaagcatttactattatttggatttcggtcttattta 41343170  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||    
T  41343171 ctatatggaaagatcgcaataggaggattttccaaaaccaaattgttcatttggaagttatacttgaaagggtcaaacttcaaacgttttggtggttgaa 41343270  T
Q  577 agctaactacat 588  Q
    ||||||||||||    
T  41343271 agctaactacat 41343282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 277 - 664
Target Start/End: Complemental strand, 10003990 - 10003603
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    ||||||||||||||||||||||||||||||| |||| || | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10003990 taaggaggaggaaagggatcatttgtttttcgaatgcgacttttatggtcggttatggcttttgctatcggattggttaggttttgttacggttctcaat 10003891  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    |||||||||||||| ||||| ||||||||||| ||| | || |||||||||||||||||| ||||||| ||| |||| ||||||||||||||||||| ||    
T  10003890 ggcaatttatattctcatgctaatcagttttgcgctttaggtggtttctcaaagaattctatgaaagcttttactatcatttggatttcggtcttatata 10003791  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
    |||| ||||||||||||||||| ||||| || |||||||||| || ||  ||||| ||||| |||||||| |||||||| ||||| | ||||||||| ||    
T  10003790 ctatttggaaagatcgcaacagaaggatattccaaaaccaaagtgctctcttggaggttctacttgaaagagtcaaacttcaaacatattggtggtttaa 10003691  T
Q  577 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttt 664  Q
    |||||| ||||| |||||||||||| ||||||| |||||||||   || ||||||||||||||| | ||| |||||||||||||||||    
T  10003690 agctaattacatcttgttcgtttttgattattcgtattggagaattaatcctttaccttgtttacagactgttttgtaaagtctgttt 10003603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 277 - 640
Target Start/End: Complemental strand, 27030011 - 27029648
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    ||||||||||||||| ||||||||||||||||||||  |   |||||| || |||||||||||||| |||||||||||||||||||||||||||||||||    
T  27030011 taaggaggaggaaagagatcatttgtttttccaatgcaaagtttatggacgtttatggcttatgctctcggattggttaggttttgttacggttctcaat 27029912  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    |||||||||||||| ||||| ||||||||||| ||| | || |||||||||||||||||| ||||||| ||| |||| ||||||||||||||||||| ||    
T  27029911 ggcaatttatattctcatgctaatcagttttgcgctttaggtggtttctcaaagaattctatgaaagcttttactatcatttggatttcggtcttatata 27029812  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
    |||| ||||||||||||||||||||||| || |||||||||| || || |||||| ||||| |||||||| |||||||| ||||| | ||||||||||||    
T  27029811 ctatttggaaagatcgcaacaggaggatattccaaaaccaaagtgctcttttggaggttctacttgaaagagtcaaacttcaaacatattggtggttgaa 27029712  T
Q  577 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgttta 640  Q
    |||||| ||||| |||||||||||| ||||||| |||| |||||  || |||||||||||||||    
T  27029711 agctaattacatcttgttcgtttttcattattcgtatttgagacttaatcctttaccttgttta 27029648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 277 - 665
Target Start/End: Complemental strand, 5557326 - 5556938
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggt-tctcaa 375  Q
    |||||||||||||||||| |||||||||||  |||||||| |||||||||| ||||| ||  || ||||| ||||||| ||| |||||||||| | ||||    
T  5557326 taaggaggaggaaagggaccatttgtttttttaatgtgatcattatggtcgattatgactcttgatatcgaattggtttggtattgttacggtgtttcaa 5557227  T
Q  376 tggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattt 475  Q
     |  ||||||  ||||||||| |||||||||||||||||||||| ||||||||||||||||| || | | ||| ||||||| ||||||||||||||||||    
T  5557226 -gataatttaatttcacatgctaatcagttttgtgctcttggagctttctcaaagaattcttggataacttttactattatatggatttcggtcttattt 5557128  T
Q  476 actatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttga 575  Q
      | | |||||||||||||||||||||||||||||| ||||||||| |||| | |||| |||| |||||||||| ||||| ||||| |  ||||||||||    
T  5557127 gttgtttggaaagatcgcaacaggaggatttttcaataccaaattgatcatctcgaagctctttttgaaagggttaaacttcaaacttactggtggttga 5557028  T
Q  576 aagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgtttt 665  Q
    |||| |||| |||   ||||| |||| | ||| | | |||||||||||| || |||| ||||||| | ||| |  ||||| |||||||||    
T  5557027 aagcaaacttcatcacgttcgcttttgactatcccttttggagacaaaatccgttacattgtttacagactgtaatgtaatgtctgtttt 5556938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 277 - 624
Target Start/End: Complemental strand, 49369826 - 49369479
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||  || ||||| ||||| | ||||||||||||||  |  ||    
T  49369826 taaggaggaggaaagggatcatttgttttttcaatgtgattattatggtcgattatggctcttgatatcgaattggcttggttttgttacggtgtttcat 49369727  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    | |||||||||| | ||||| || ||||||| ||| ||||||||||| |||||||||| |  |||||| || |||||||||||||||||| | ||||||     
T  49369726 gacaatttatatactcatgctaaccagttttatgcccttggaggtttttcaaagaattatacgaaagctttgtctattatttggatttcgattttatttg 49369627  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
     ||| ||||||||| |||| | || |||||| ||||||||  | | |||| | |||| ||||||||||||||| ||||| ||||| ||||||||| ||||    
T  49369626 ttatttggaaagattgcaatatgaagattttccaaaaccatttgggtcatcttgaagctcttcttgaaagggttaaacttcaaaccttttggtggatgaa 49369527  T
Q  577 agctaactacattttgttcgttttttattattcttattggagacaaaa 624  Q
    ||| |||| |||| ||||   |||| ||||| | | ||||||||||||    
T  49369526 agcaaacttcattatgtttacttttgattatcccttttggagacaaaa 49369479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 441 - 666
Target Start/End: Original strand, 44753748 - 44753973
Alignment:
Q  441 aagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttct 540  Q
    |||| ||| |||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||| |||||||||| ||  | ||||||  |||| ||    
T  44753748 aagcttttactattatttggatttcggtcttatatactatatggaaagaccgcaacagaaggattttccaaaaccaaagtgcacttttggagtttctact 44753847  T
Q  541 tgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgttta 640  Q
    |||||| |||||||||||||| | |||||||||||||||||| ||||| |||||||||||| ||||||| |||||||||   || |||||||||||||||    
T  44753848 tgaaagagtcaaactccaaacatattggtggttgaaagctaattacatcttgttcgtttttgattattcgtattggagaattaatcctttaccttgttta 44753947  T
Q  641 aatactattttgtaaagtctgttttt 666  Q
     | ||| |||||||||||||||||||    
T  44753948 cagactgttttgtaaagtctgttttt 44753973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 473 - 664
Target Start/End: Original strand, 48759777 - 48759968
Alignment:
Q  473 tttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggt 572  Q
    |||| ||||||||||||||||||||||| |||||| |||||||||||||||| |||||| ||| | |||||||| |||||||| ||||||||||||||||    
T  48759777 tttaatatatggaaagatcgcaacaggaagattttccaaaaccaaattgttcttttggaggttttacttgaaagagtcaaacttcaaacgttttggtggt 48759876  T
Q  573 tgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttt 664  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||   || | ||||||||||||| | ||| | |||||||||||||||    
T  48759877 tgaaagctaactacatcttgttcgttttttattattcttattggagaattaatcatttaccttgtttacagactgtgttgtaaagtctgttt 48759968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 450 - 661
Target Start/End: Complemental strand, 37666239 - 37666028
Alignment:
Q  450 ctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggt 549  Q
    ||||||||||||||||||| ||||| |  || ||||||||| | |||||||| ||||||||  | ||| ||| |||| | |||| ||| |||||||||||    
T  37666239 ctattatttggatttcggttttattcatcatttggaaagatagaaacaggagaatttttcagcatcaatttgatcatcttgaagctctacttgaaagggt 37666140  T
Q  550 caaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactatt 649  Q
    |||||||||||| ||||||||||||||| | || |||||| |||||| |||| | ||| | ||||||||  |||| ||||||| ||||||| | |||  |    
T  37666139 caaactccaaacattttggtggttgaaaacgaattacattatgttcgattttgactatccctattggaggaaaaatcctttactttgtttacagactgct 37666040  T
Q  650 ttgtaaagtctg 661  Q
    |||||| |||||    
T  37666039 ttgtaatgtctg 37666028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 375 - 584
Target Start/End: Complemental strand, 45757644 - 45757435
Alignment:
Q  375 atggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatt 474  Q
    ||||||||||| ||  |||||  ||||||||||||||  ||||||| |||||||||||||||  || | | ||| ||||||| |||| ||  ||||||||    
T  45757644 atggcaatttacatatacatgttaatcagttttgtgcctttggaggcttctcaaagaattctaggacaccttttactattatctggacttttgtcttatt 45757545  T
Q  475 tactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttg 574  Q
    |  ||||||||||||| |||||||||  ||||| ||||| || | || |||| |  | | ||||||||||||||| || || ||||| ||||||||||||    
T  45757544 tgttatatggaaagattgcaacaggaaaattttccaaaatcacagtgatcatctaaatgctcttcttgaaagggttaagcttcaaacattttggtggttg 45757445  T
Q  575 aaagctaact 584  Q
    ||||| ||||    
T  45757444 aaagcaaact 45757435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 383 - 588
Target Start/End: Complemental strand, 40392658 - 40392461
Alignment:
Q  383 ttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatat 482  Q
    |||||| | ||| ||||||||||||||||||||||||| ||||||||||||||     ||| |   ||||||||||||||||||  |||||||  |||||    
T  40392658 ttatatgctcattcaaatcagttttgtgctcttggagggttctcaaagaattc-----aagga---tctattatttggatttcgaccttatttgttatat 40392567  T
Q  483 ggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaa 582  Q
    ||||||| || ||||  || |||||| | |||||| ||| |||  |   ||  |||||||||| ||| ||||||||||| | ||||||||||||||| ||    
T  40392566 ggaaagaccgtaacaatagaatttttgataaccaatttgatcaacttacaggacttcttgaaaaggttaaactccaaacatattggtggttgaaagcgaa 40392467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 297 - 474
Target Start/End: Complemental strand, 26996002 - 26995826
Alignment:
Q  297 atttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgc 396  Q
    ||||||||||| |||||||| | |||||||| || |||||| || ||||  ||||| | ||| | | ||| |||||  ||||| | |||||| | ||| |    
T  26996002 atttgtttttc-aatgtgatcactatggtcgtttgtggcttctgatatctcattggcttggtatcgatacagttcttcatggcgacttatatgctcattc 26995904  T
Q  397 aaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatt 474  Q
    ||||||||||||| |||||||||| |||||||| |||||   || | |||| ||| ||||||||||||||||||||||    
T  26995903 aaatcagttttgtactcttggagggttctcaaaaaattcaaggacaacattctctgttatttggatttcggtcttatt 26995826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 551 - 664
Target Start/End: Original strand, 32152387 - 32152500
Alignment:
Q  551 aaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattt 650  Q
    |||||| |||||||||||||||||||||| || |||||  |||||| |||| | ||| ||||||||||  |||| ||||||| ||||||| | |||  ||    
T  32152387 aaactctaaacgttttggtggttgaaagcgaattacatcatgttcgattttgactatccttattggaggaaaaatcctttactttgtttacagactgctt 32152486  T
Q  651 tgtaaagtctgttt 664  Q
    ||||| ||||||||    
T  32152487 tgtaatgtctgttt 32152500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 589
Target Start/End: Complemental strand, 26995765 - 26995712
Alignment:
Q  536 cttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacatt 589  Q
    |||||||| | ||| ||||||||||| | ||||||||||||||| |||||||||    
T  26995765 cttcttgagaaggttaaactccaaacatattggtggttgaaagcgaactacatt 26995712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 41329679 - 41329720
Alignment:
Q  125 agtgatgatatttacaaagaatgttgtgcttggcttgataca 166  Q
    |||||||||||||  |||||||||||||||||||| ||||||    
T  41329679 agtgatgatatttttaaagaatgttgtgcttggctagataca 41329720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 277 - 665
Target Start/End: Complemental strand, 74357 - 73969
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||| || ||||  ||||| | ||||||||||| ||  |  ||    
T  74357 taaggaggaggaaatggaccatttgtttttccaatgtgattattatggtcagttatggcttttgatatcaaattggcttggttttgttacagtgtttcat 74258  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    |||||||||||| ||||||  ||||||||||| |||||  |||  ||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||    
T  74257 ggcaatttatatacacatgataatcagttttgcgctctaagagacttctcaaagaattctatgaaagcttttactattatttggatttcggtcttattta 74158  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||| ||||||||||||||| ||||| ||||||||||||||||||||    
T  74157 ctatatggaaagatcgcaacaggaggattttccaaaaccaaattgatcatctggaagctcttcttgaaagggttaaacttcaaacgttttggtggttgaa 74058  T
Q  577 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgtttt 665  Q
    ||||||||||||   ||||| |||| | ||| | | |||||||||||| || |||  ||||||| | ||| | ||||||||||||||||    
T  74057 agctaactacatcacgttcgcttttgactatcccttttggagacaaaatcccttatgttgtttacagactgtcttgtaaagtctgtttt 73969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 146; Significance: 1e-76; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 277 - 666
Target Start/End: Original strand, 58559 - 58948
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 376  Q
    |||||||||||||||||| | ||||||||| ||||||||  |||||||||||||||||||  || ||||  ||||| | ||||||||||||||  |  |     
T  58559 taaggaggaggaaagggaccgtttgttttttcaatgtgacaattatggtcggttatggctcttgatatcaaattggcttggttttgttacggtgtttcac 58658  T
Q  377 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 476  Q
    | ||||||| || ||||||| |||||||||||||||||||||||||||||||||||  || ||| ||| ||| ||||||||||||||||||||||||||     
T  58659 gacaatttaaatacacatgctaatcagttttgtgctcttggaggtttctcaaagaacgctatgatagcttttactattatttggatttcggtcttatttg 58758  T
Q  477 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 576  Q
     |||||||||||||||||||||||||||||| |||||||| || | |||| | |||| ||||||||||||||| ||||| ||||| | ||||||||||||    
T  58759 ttatatggaaagatcgcaacaggaggattttccaaaaccatatggatcatcttgaagctcttcttgaaagggttaaacttcaaacatattggtggttgaa 58858  T
Q  577 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttt 666  Q
    ||| |||| |||    |||| |||| | ||| | | |||||||||||| || |||  ||||||| | ||| | |||||| ||||||||||    
T  58859 agcaaacttcatcactttcgcttttgactatcccttttggagacaaaatcccttatgttgtttacagactgtcttgtaatgtctgttttt 58948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 450 - 584
Target Start/End: Original strand, 225060 - 225194
Alignment:
Q  450 ctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggt 549  Q
    |||| |||||||||||||| ||||||  |||||||||||||||||| ||||| || |||||||| ||  |||||||| | |||| |||| | |||| |||    
T  225060 ctatcatttggatttcggttttatttgttatatggaaagatcgcaataggagaatatttcaaaagcaggttgttcatcttgaagctcttttggaaaaggt 225159  T
Q  550 caaactccaaacgttttggtggttgaaagctaact 584  Q
     ||||| ||||||| |||||| |||||||| ||||    
T  225160 taaacttcaaacgtattggtgattgaaagcaaact 225194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 277 - 336
Target Start/End: Original strand, 224889 - 224948
Alignment:
Q  277 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggct 336  Q
    ||||||||||||||| || ||||| ||||||||||||||| |||||||  ||||||||||    
T  224889 taaggaggaggaaagagaccatttatttttccaatgtgatcattatgggtggttatggct 224948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 184
Target Start/End: Original strand, 5256 - 5387
Alignment:
Q  53 atgcatccggacaagtgcccaggccttgacggctatagtccaggattttatcagcatttctggagtctatgcagtgatgatatttacaaagaatgttgtg 152  Q
    |||||||||||||| ||  | |||| ||| || |||||||| || ||||| || || || |||| | ||||||||||||| || | ||| ||||||||||    
T  5256 atgcatccggacaaatgttccggccctgatggatatagtccgggtttttaccaacaattttggaatttatgcagtgatgacatcttcaaggaatgttgtg 5355  T
Q  153 cttggcttgatacagggcagttcccacctgat 184  Q
     |||| | |||||||| |||||||||||||||    
T  5356 gttggttagatacaggacagttcccacctgat 5387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 375 - 473
Target Start/End: Complemental strand, 11026 - 10928
Alignment:
Q  375 atggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttat 473  Q
    ||||| ||||||||   ||| ||||||| |||||||||||||||||||| ||||| |||||    | | | || |||||||||||||||||||||||||    
T  11026 atggcgatttatataatcattcaaatcaattttgtgctcttggaggtttatcaaaaaattcaagtacaactttctctattatttggatttcggtcttat 10928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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