View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10263_low_16 (Length: 239)
Name: NF10263_low_16
Description: NF10263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10263_low_16 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 39379077 - 39379298
Alignment:
| Q |
18 |
atgtggtcatttacgcgtgaatatgtaccccaatagaagtattgtataagttagccgtttccattaccccatttctttacatcaggttgttctactacaa |
117 |
Q |
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| T |
39379077 |
atgtggtcatttacgcgtgaatatgtaccccaatagaagtagtgtataagttagccgtttccattaccccatttctttacatcaggttgttctactacaa |
39379176 |
T |
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| Q |
118 |
acactactttcctttatgtgcttgcagctcaagcatgcgatatccaatctccttttcaagaacctcagactgtagtctgcaatccgaaatgcattgttga |
217 |
Q |
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| T |
39379177 |
acactactttcctttatgtgcttgcagctcaagcatgcgatatccgatctcattttcaagaacctcagactgtagtctgcaatccgaaatgcattgttga |
39379276 |
T |
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| Q |
218 |
acagtttccaaactagcaattt |
239 |
Q |
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| T |
39379277 |
acagtttccaaactagcaattt |
39379298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 62 - 168
Target Start/End: Original strand, 39385893 - 39386000
Alignment:
| Q |
62 |
tataagttagc-cgtttccattaccccatttctttacatcaggttgttctactacaaacactactttcctttatgtgcttgcagctcaagcatgcgatat |
160 |
Q |
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| T |
39385893 |
tataagttagcacgtttccattaccccatttctttgcattaagttgttttagtacaaaaactatttgcctttatgtgcttttagctcaagaatgcgatat |
39385992 |
T |
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| Q |
161 |
ccaatctc |
168 |
Q |
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| T |
39385993 |
tcaatctc |
39386000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 55 - 171
Target Start/End: Complemental strand, 33563895 - 33563778
Alignment:
| Q |
55 |
agtattgtataagttagc-cgtttccattaccccatttctttacatcaggttgttctactacaaacactactttcctttatgtgcttgcagctcaagcat |
153 |
Q |
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| T |
33563895 |
agtagtgtgtaagttagcacgtttcgattaccccatttctttacattaggttgttccactccaaaaactaattgcctttatgtgattttagcacaagaat |
33563796 |
T |
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| Q |
154 |
gcgatatccaatctcctt |
171 |
Q |
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| T |
33563795 |
gcgatggtcaatctcctt |
33563778 |
T |
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