View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10263_low_2 (Length: 630)

Name: NF10263_low_2
Description: NF10263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10263_low_2
NF10263_low_2
[»] chr4 (36 HSPs)
chr4 (1-615)||(3669612-3670226)
chr4 (202-262)||(33790706-33790766)
chr4 (184-262)||(2066875-2066953)
chr4 (196-262)||(25141883-25141949)
chr4 (186-262)||(4972646-4972722)
chr4 (203-262)||(32884887-32884946)
chr4 (203-262)||(47464341-47464400)
chr4 (184-262)||(11907556-11907634)
chr4 (201-255)||(49175908-49175962)
chr4 (201-262)||(32469922-32469983)
chr4 (185-262)||(52859757-52859834)
chr4 (186-262)||(7061623-7061699)
chr4 (186-262)||(36985872-36985948)
chr4 (202-262)||(51625169-51625229)
chr4 (227-262)||(30192291-30192326)
chr4 (203-262)||(43237329-43237388)
chr4 (202-262)||(6609847-6609908)
chr4 (185-262)||(49428300-49428377)
chr4 (185-262)||(52247386-52247463)
chr4 (201-262)||(53412194-53412255)
chr4 (202-262)||(462044-462104)
chr4 (202-262)||(17114526-17114586)
chr4 (202-262)||(38405077-38405137)
chr4 (202-262)||(50263907-50263967)
chr4 (203-262)||(6643636-6643695)
chr4 (211-262)||(11288614-11288665)
chr4 (203-262)||(40122830-40122889)
chr4 (227-262)||(42517638-42517673)
chr4 (184-262)||(16411324-16411402)
chr4 (202-262)||(2653506-2653564)
chr4 (221-262)||(44536190-44536231)
chr4 (202-262)||(3689648-3689708)
chr4 (186-254)||(22130141-22130209)
chr4 (230-262)||(25869847-25869879)
chr4 (202-262)||(47772994-47773054)
chr4 (206-262)||(54506874-54506930)
[»] chr7 (38 HSPs)
chr7 (304-415)||(26331988-26332099)
chr7 (182-262)||(83478-83558)
chr7 (182-262)||(16560526-16560606)
chr7 (182-262)||(16605056-16605136)
chr7 (202-262)||(44180298-44180358)
chr7 (182-262)||(46211524-46211604)
chr7 (183-262)||(9786081-9786160)
chr7 (195-262)||(16904472-16904539)
chr7 (4-83)||(26331456-26331535)
chr7 (185-262)||(28202268-28202345)
chr7 (185-262)||(42935754-42935831)
chr7 (182-262)||(759048-759127)
chr7 (183-262)||(28103826-28103905)
chr7 (185-262)||(24516248-24516325)
chr7 (185-262)||(32018671-32018748)
chr7 (189-262)||(44424228-44424301)
chr7 (202-262)||(13962052-13962112)
chr7 (202-262)||(26974122-26974182)
chr7 (186-262)||(34100507-34100583)
chr7 (202-262)||(40076408-40076468)
chr7 (186-262)||(21390388-21390466)
chr7 (211-262)||(38391841-38391892)
chr7 (208-262)||(21759966-21760020)
chr7 (201-262)||(2459562-2459623)
chr7 (185-262)||(27904859-27904936)
chr7 (226-262)||(5524473-5524509)
chr7 (206-262)||(48608955-48609011)
chr7 (203-262)||(22738794-22738853)
chr7 (203-262)||(41506043-41506101)
chr7 (184-262)||(2850839-2850917)
chr7 (292-374)||(30394764-30394846)
chr7 (228-262)||(49101759-49101793)
chr7 (328-385)||(9606850-9606907)
chr7 (328-385)||(9834421-9834478)
chr7 (226-262)||(19271733-19271769)
chr7 (321-357)||(22585727-22585763)
chr7 (202-262)||(27921081-27921141)
chr7 (202-262)||(34947593-34947653)
[»] chr3 (28 HSPs)
chr3 (292-402)||(26966152-26966262)
chr3 (292-395)||(2057003-2057106)
chr3 (183-262)||(17652834-17652913)
chr3 (184-262)||(37497578-37497656)
chr3 (202-262)||(8679023-8679083)
chr3 (202-262)||(24569069-24569129)
chr3 (205-262)||(29023938-29023995)
chr3 (202-262)||(10366611-10366671)
chr3 (203-262)||(37312036-37312095)
chr3 (185-262)||(19823097-19823174)
chr3 (189-262)||(33491039-33491112)
chr3 (185-262)||(45710936-45711013)
chr3 (202-262)||(11905908-11905968)
chr3 (201-261)||(12736540-12736600)
chr3 (211-262)||(27471421-27471472)
chr3 (196-262)||(19609385-19609451)
chr3 (196-262)||(40462398-40462464)
chr3 (185-262)||(1778728-1778805)
chr3 (201-262)||(14194641-14194702)
chr3 (202-262)||(37695634-37695695)
chr3 (201-262)||(38795430-38795491)
chr3 (203-262)||(11632167-11632225)
chr3 (211-262)||(43253841-43253892)
chr3 (228-262)||(19611994-19612028)
chr3 (202-259)||(34957592-34957649)
chr3 (185-262)||(53560303-53560380)
chr3 (206-262)||(30190633-30190689)
chr3 (202-262)||(52290979-52291039)
[»] chr5 (27 HSPs)
chr5 (292-415)||(31614625-31614748)
chr5 (186-262)||(38508138-38508214)
chr5 (202-262)||(42922834-42922894)
chr5 (181-262)||(843523-843604)
chr5 (202-262)||(40900004-40900064)
chr5 (205-252)||(6753629-6753676)
chr5 (203-262)||(9515832-9515891)
chr5 (203-262)||(29570478-29570537)
chr5 (208-262)||(2232046-2232100)
chr5 (208-262)||(15818453-15818507)
chr5 (216-262)||(19930032-19930078)
chr5 (185-262)||(7827876-7827953)
chr5 (202-255)||(41478920-41478973)
chr5 (202-255)||(41492395-41492448)
chr5 (202-262)||(2588035-2588095)
chr5 (202-262)||(21060716-21060776)
chr5 (186-262)||(32440227-32440303)
chr5 (226-262)||(40530215-40530251)
chr5 (185-262)||(1248554-1248631)
chr5 (201-262)||(11796133-11796194)
chr5 (185-262)||(27542881-27542958)
chr5 (185-262)||(31655139-31655216)
chr5 (210-262)||(4818637-4818689)
chr5 (307-383)||(18875591-18875667)
chr5 (202-262)||(30512652-30512712)
chr5 (202-262)||(30552992-30553052)
chr5 (320-380)||(39835166-39835226)
[»] chr6 (16 HSPs)
chr6 (182-262)||(29363392-29363472)
chr6 (185-262)||(32440596-32440673)
chr6 (202-262)||(11655914-11655974)
chr6 (181-254)||(3291715-3291788)
chr6 (202-262)||(6802017-6802077)
chr6 (194-262)||(7920324-7920392)
chr6 (202-262)||(21010263-21010323)
chr6 (192-262)||(1063561-1063631)
chr6 (211-260)||(1781890-1781939)
chr6 (185-262)||(31894161-31894238)
chr6 (202-262)||(6834337-6834397)
chr6 (214-262)||(23142753-23142801)
chr6 (202-262)||(27448124-27448184)
chr6 (203-262)||(3720210-3720269)
chr6 (184-262)||(13087616-13087694)
chr6 (186-252)||(15058213-15058279)
[»] chr1 (31 HSPs)
chr1 (186-262)||(26093480-26093556)
chr1 (193-262)||(30754904-30754973)
chr1 (185-262)||(41080684-41080761)
chr1 (206-262)||(16395023-16395079)
chr1 (195-262)||(6160424-6160491)
chr1 (202-262)||(38787427-38787487)
chr1 (202-262)||(49223958-49224018)
chr1 (196-262)||(6267822-6267888)
chr1 (202-262)||(40144819-40144879)
chr1 (203-262)||(12039168-12039227)
chr1 (183-262)||(32970520-32970599)
chr1 (208-262)||(35367622-35367677)
chr1 (208-262)||(43500762-43500816)
chr1 (185-262)||(31978607-31978684)
chr1 (202-262)||(5179371-5179431)
chr1 (186-262)||(24991609-24991685)
chr1 (214-262)||(28749077-28749125)
chr1 (210-262)||(35538729-35538781)
chr1 (202-262)||(37506213-37506273)
chr1 (202-262)||(39864197-39864257)
chr1 (202-262)||(42410080-42410140)
chr1 (202-262)||(45331427-45331487)
chr1 (211-262)||(21909987-21910038)
chr1 (203-262)||(23168966-23169025)
chr1 (196-250)||(7439881-7439935)
chr1 (184-262)||(13579575-13579653)
chr1 (202-262)||(15699208-15699269)
chr1 (202-262)||(917110-917170)
chr1 (186-262)||(31042883-31042959)
chr1 (202-262)||(32825964-32826023)
chr1 (230-262)||(34332422-34332454)
[»] chr8 (24 HSPs)
chr8 (185-262)||(39482701-39482778)
chr8 (202-262)||(36967447-36967507)
chr8 (184-262)||(40996317-40996395)
chr8 (202-262)||(51198-51258)
chr8 (186-262)||(45425620-45425696)
chr8 (183-262)||(39405848-39405927)
chr8 (181-262)||(13335302-13335383)
chr8 (202-254)||(17719228-17719280)
chr8 (202-262)||(32678804-32678864)
chr8 (203-262)||(6611783-6611842)
chr8 (208-259)||(26626088-26626139)
chr8 (208-262)||(1875568-1875622)
chr8 (201-262)||(4428321-4428381)
chr8 (213-262)||(29226212-29226261)
chr8 (202-262)||(10097961-10098021)
chr8 (202-262)||(31271107-31271167)
chr8 (202-262)||(34393924-34393984)
chr8 (186-262)||(34948641-34948717)
chr8 (213-262)||(9300094-9300143)
chr8 (205-262)||(12559679-12559735)
chr8 (209-262)||(21216078-21216131)
chr8 (186-262)||(7703110-7703186)
chr8 (206-262)||(10179921-10179977)
chr8 (226-262)||(42972502-42972538)
[»] scaffold0110 (1 HSPs)
scaffold0110 (202-262)||(1790-1850)
[»] chr2 (26 HSPs)
chr2 (202-262)||(16463775-16463835)
chr2 (201-262)||(18853166-18853227)
chr2 (201-262)||(19937763-19937824)
chr2 (185-262)||(39785674-39785751)
chr2 (202-262)||(15359054-15359114)
chr2 (186-262)||(17695416-17695492)
chr2 (186-262)||(25637567-25637642)
chr2 (202-262)||(36794370-36794430)
chr2 (202-262)||(39691576-39691636)
chr2 (202-262)||(45235667-45235727)
chr2 (191-262)||(10005081-10005151)
chr2 (207-262)||(31448665-31448720)
chr2 (181-262)||(37322514-37322596)
chr2 (213-262)||(26607946-26607995)
chr2 (185-262)||(36354393-36354470)
chr2 (202-254)||(5272160-5272212)
chr2 (202-262)||(34120406-34120466)
chr2 (186-262)||(39443799-39443875)
chr2 (203-262)||(3323254-3323313)
chr2 (211-261)||(16377632-16377682)
chr2 (185-262)||(41220895-41220973)
chr2 (182-262)||(35313973-35314054)
chr2 (230-262)||(15435457-15435489)
chr2 (206-262)||(16805967-16806023)
chr2 (206-262)||(16845248-16845304)
chr2 (202-262)||(32783450-32783510)
[»] scaffold0095 (1 HSPs)
scaffold0095 (183-262)||(50290-50369)
[»] scaffold0294 (1 HSPs)
scaffold0294 (186-262)||(17121-17197)
[»] scaffold0470 (1 HSPs)
scaffold0470 (203-262)||(1071-1130)
[»] scaffold1391 (1 HSPs)
scaffold1391 (202-262)||(1786-1846)
[»] scaffold0018 (1 HSPs)
scaffold0018 (186-262)||(135990-136066)
[»] scaffold0003 (1 HSPs)
scaffold0003 (202-262)||(39174-39234)
[»] scaffold0302 (1 HSPs)
scaffold0302 (203-262)||(16184-16243)
[»] scaffold0012 (1 HSPs)
scaffold0012 (212-262)||(105770-105820)
[»] scaffold0464 (1 HSPs)
scaffold0464 (208-261)||(6260-6313)
[»] scaffold0328 (1 HSPs)
scaffold0328 (202-263)||(7950-8011)
[»] scaffold0583 (1 HSPs)
scaffold0583 (202-262)||(2111-2171)


Alignment Details
Target: chr4 (Bit Score: 574; Significance: 0; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 1 - 615
Target Start/End: Complemental strand, 3670226 - 3669612
Alignment:
Q  1 tcatggttatgtttcccttcatatgttgtgattactgctttaatatcatgtgctgctctctcaacatgttttctcacagtacaaccttggattacacatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3670226 tcatggttatgtttcccttcatatgttgtgattactgctttaatatcatgtgctgctctctcaacatgttttctcacagtacaaccttggattacacatt 3670127  T
Q  101 tgtagtagctcctgcaaaaacaatattttgaacaagttattatcatatagggttggtaacaaatatctagaactccgaagttaaatactccatctgtctg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3670126 tgtagtagctcctgcaaaaacaatattttgaacaagttattatcatatagggttgctaacaaatatctagaactccgaagttaaatactccatctgtctg 3670027  T
Q  201 aaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgatttgtttgtttccataatttgaattatttgcataccttggg 300  Q
    |||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3670026 aaaataatagtcgtttaagatttatgcatgatttttaaaaaaatgattaattgtgttgatttgtttgtttccataatttgaattatttgcataccttggg 3669927  T
Q  301 tttggatttcctttaactactttctgtccatatttcctccacctatatccatcatcaagaatatcaatttcacttgtagtttgaaccacaactcttggtt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3669926 tttggatttcctttaactactttctgtccatatttcctccacctatatccatcatcaagaatatcaatttcacttgtagtttgaaccacaactcttggtt 3669827  T
Q  401 ccttaacagttctacacccttctgtggagtaagaatagctatcattttcattctctcctttcctacaataataagaatcataaattagtgatattgaaat 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3669826 ccttaacagttctacacccttctgtggagtaagaatagctatcattttcattctctcctttcctacaataataagaatcataaattagtgatattgaaat 3669727  T
Q  501 caacctcaaaaatatatattggtacttcatgcaaattagcattgcaagcacnnnnnnntacaccctcctgtcactattataaactagagggtggtctaca 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||| |||||||||||||||    
T  3669726 caacctcaaaaatatatattggtacttcatgcaaattagcattgcaagcacaaaaaaatacaccctcctgtcactattataaaccagagggtggtctaca 3669627  T
Q  601 ttataaactacatac 615  Q
    |||||||||||||||    
T  3669626 ttataaactacatac 3669612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 33790706 - 33790766
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||    
T  33790706 aaataatagtcgtttaaggtttatgcacgattattaagaaaatgattaattgtgttgattt 33790766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 184 - 262
Target Start/End: Complemental strand, 2066953 - 2066875
Alignment:
Q  184 aatactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||  |||  |||||||||||||||||| |||| |||||||| ||||| ||||||||||||||||||||||    
T  2066953 aatactccatccatctttaaataatagtcgtttaaggtttatgcacgattattaaggaaatgattaattgtgttgattt 2066875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 196 - 262
Target Start/End: Original strand, 25141883 - 25141949
Alignment:
Q  196 gtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||| ||||||||||||||||||| ||||   ||||||||||||||||||||||| |||||||||||    
T  25141883 gtcttaaaataatagtcgtttaaggtttatatacgatttttaagaaaatgattaaatgtgttgattt 25141949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 4972722 - 4972646
Alignment:
Q  186 tactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||| |||| | |||| ||||||||||||||||  |||||||| ||||  ||||||||||||||||||||||    
T  4972722 tactccatccgtctcacaatattagtcgtttaagatttgtgcacgattattaatgaaatgattaattgtgttgattt 4972646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 32884946 - 32884887
Alignment:
Q  203 aataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||| |||||||||||| |||  |||||||| ||||||||||||||||||||||||||||    
T  32884946 aatattagtcgtttaaggtttgtgcacgattattaagaaaatgattaattgtgttgattt 32884887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 47464341 - 47464400
Alignment:
Q  203 aataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||| |||||||||||| ||| ||||||||| ||||| ||||||||||||||||||||||    
T  47464341 aatattagtcgtttaaggtttgagcacgattattaaggaaatgattaattgtgttgattt 47464400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 262
Target Start/End: Original strand, 11907556 - 11907634
Alignment:
Q  184 aatactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||| || ||||  ||||||||||| |||||| || | |||||||| ||||| ||||||||||||||||||||||    
T  11907556 aatactccctccgtctctaaataatagtcatttaaggttaatgcacgattattaaggaaatgattaattgtgttgattt 11907634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 49175908 - 49175962
Alignment:
Q  201 aaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtg 255  Q
    ||||||||||||||||||| |||  ||| ||||||||||||||||||||||||||    
T  49175908 aaaataatagtcgtttaaggtttgtgcatgatttttaagaaaatgattaattgtg 49175962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 32469922 - 32469983
Alignment:
Q  201 aaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||| | |||||||||||| |||  ||||| ||||||||||||||||||||||||||    
T  32469922 aaaataatatttgtttaagatttatgcataattttaaagaaaatgattaattgtgttgattt 32469983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 185 - 262
Target Start/End: Original strand, 52859757 - 52859834
Alignment:
Q  185 atactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||| || ||||  |||||||||||| |||||  ||| |||||||| ||||| ||||||||||||||||||||||    
T  52859757 atactccctccgtctctaaataatagtcgcttaaggcttatgcacgattattaaggaaatgattaattgtgttgattt 52859834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 262
Target Start/End: Original strand, 7061623 - 7061699
Alignment:
Q  186 tactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||| ||||||| | |||| |||||||||||| |||   ||||||| ||||| ||||||||||||||||||||||    
T  7061623 tactccctctgtctcacaatattagtcgtttaaggtttgtacacgattattaaggaaatgattaattgtgttgattt 7061699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 36985948 - 36985872
Alignment:
Q  186 tactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||| || |||| ||||||||| |||||||||||||    ||||||||| || ||||||||||||||||||||||    
T  36985948 tactccctccgtctcaaaataatactcgtttaagatttttatacgatttttcaggaaatgattaattgtgttgattt 36985872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 51625229 - 51625169
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||| ||||||||||||  |||  |||||||| ||||||||||||||||||||||||||||    
T  51625229 aaattatagtcgtttaaagtttgtgcacgattattaagaaaatgattaattgtgttgattt 51625169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 227 - 262
Target Start/End: Complemental strand, 30192326 - 30192291
Alignment:
Q  227 cacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||||||||||||||||||||||||||||||    
T  30192326 cacgatttttaagaaaatgattaattgtgttgattt 30192291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 43237388 - 43237329
Alignment:
Q  203 aataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||| |||||||||||| |||| |||||||| ||||| ||||||||||||||||| ||||    
T  43237388 aatattagtcgtttaaggtttatgcacgattattaaggaaatgattaattgtgtttattt 43237329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 6609908 - 6609847
Alignment:
Q  202 aaataatagt-cgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||| |||||||  |||| |||||||| ||||| ||||||||||||||||||||||    
T  6609908 aaataatagttcgtttaaagtttatgcacgattattaaggaaatgattaattgtgttgattt 6609847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 185 - 262
Target Start/End: Original strand, 49428300 - 49428377
Alignment:
Q  185 atactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||| || ||||  |||| ||||||||||||| |||  |||||||| ||||| ||||||||| ||||||||||||    
T  49428300 atactccctccgtctctaaattatagtcgtttaaggtttttgcacgattattaaggaaatgattatttgtgttgattt 49428377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 185 - 262
Target Start/End: Original strand, 52247386 - 52247463
Alignment:
Q  185 atactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||| || ||||  |||| |||||||||||||  ||  |||||||| ||||||||||||||||||||||| ||||    
T  52247386 atactccctccgtctctaaattatagtcgtttaaggattgtgcacgattattaagaaaatgattaattgtgttaattt 52247463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 201 - 262
Target Start/End: Complemental strand, 53412255 - 53412194
Alignment:
Q  201 aaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||||| ||||| |||||| | |||||||||||||||| |||||||| | |||||||    
T  53412255 aaaataatagttgtttacgatttacgtacgatttttaagaaaacgattaattttattgattt 53412194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 462104 - 462044
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||||  ||||||||||  |||  |||||||||||||||||||||||| |||||||    
T  462104 aaataatagtaatttaagatttgtgcataatttttaagaaaatgattaattgtattgattt 462044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 17114586 - 17114526
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||||||||| || | ||||  || ||||| ||||||||||||||||||||||    
T  17114586 aaataatagtcgtttaaggttgatgcacagttattaaggaaatgattaattgtgttgattt 17114526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 38405077 - 38405137
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||| ||||||||||||| |||  |||||||| ||||| |||||||||||| |||||||||    
T  38405077 aaattatagtcgtttaaggtttgtgcacgattattaaggaaatgattaattctgttgattt 38405137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 50263907 - 50263967
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||| ||||||||||||| |||  |||||||| |||||||||||||| | |||||||||||    
T  50263907 aaattatagtcgtttaaggtttgtgcacgattattaagaaaatgattcactgtgttgattt 50263967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 6643636 - 6643695
Alignment:
Q  203 aataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||| |||| ||||||  ||| ||||||||| ||||| ||||||||||||||||||||||    
T  6643636 aatattagtagtttaatgtttgagcacgattattaaggaaatgattaattgtgttgattt 6643695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 262
Target Start/End: Original strand, 11288614 - 11288665
Alignment:
Q  211 tcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||| |||| | |||||| |||||||||||||||||||| |||||||    
T  11288614 tcgtttaaggtttatgtacgattattaagaaaatgattaattgtattgattt 11288665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 40122830 - 40122889
Alignment:
Q  203 aataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||| |||||||||||| |||  |||||||| ||||| ||||||||||||| ||||||||    
T  40122830 aatattagtcgtttaagctttgtgcacgattattaaggaaatgattaattgcgttgattt 40122889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 262
Target Start/End: Original strand, 42517638 - 42517673
Alignment:
Q  227 cacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||| ||||||||||||||||||||||||||||    
T  42517638 cacgattattaagaaaatgattaattgtgttgattt 42517673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 184 - 262
Target Start/End: Original strand, 16411324 - 16411402
Alignment:
Q  184 aatactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||| ||||||||||| ||| | |||||||||||||||||  || |  |||| |||||||| ||||||| |||||||||    
T  16411324 aatattccatctgtctcaaactgatagtcgtttaagatttgtgcccagttttaaagaaaataattaattatgttgattt 16411402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 2653564 - 2653506
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||| |||||||||||  ||| |||| ||||  ||||||||||||||||||||||    
T  2653564 aaataatagttgtttaagatttgtgcatgattattaa--aaatgattaattgtgttgattt 2653506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 44536190 - 44536231
Alignment:
Q  221 tttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||| |||||||| ||||| ||||||||||||||||||||||    
T  44536190 tttatgcacgattattaaggaaatgattaattgtgttgattt 44536231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 3689708 - 3689648
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||||||||| |||| | ||| || ||||  |||||||||||||| |||||||    
T  3689708 aaataatagtcgtttaaggtttatgtacggttattaaagaaatgattaattgtattgattt 3689648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 186 - 254
Target Start/End: Complemental strand, 22130209 - 22130141
Alignment:
Q  186 tactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgt 254  Q
    ||||||||| |||| | |||| |||||||||||| |||  ||||| || ||||| ||||||||||||||    
T  22130209 tactccatccgtctcacaatattagtcgtttaaggtttgtgcacggttattaaggaaatgattaattgt 22130141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 230 - 262
Target Start/End: Original strand, 25869847 - 25869879
Alignment:
Q  230 gatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||| |||||||||||||||||||||||||    
T  25869847 gattttttagaaaatgattaattgtgttgattt 25869879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 47772994 - 47773054
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||||||||| || | ||||  || ||||| |||| |||||||||||||||||    
T  47772994 aaataatagtcgtttaaggttgatgcacagttattaaggaaataattaattgtgttgattt 47773054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 206 - 262
Target Start/End: Complemental strand, 54506930 - 54506874
Alignment:
Q  206 aatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||||||||||||    ||| || |||||||||||||||| |||||||||||    
T  54506930 aatagtcgtttaagatttgtttacggttattaagaaaatgattaactgtgttgattt 54506874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 304 - 415
Target Start/End: Original strand, 26331988 - 26332099
Alignment:
Q  304 ggatttcctttaactactttctgtccatatttcctccacctatatccatcatcaagaatatcaatttcacttgtagtttgaaccacaactcttggttcct 403  Q
    |||||||||||||| ||||| ||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||| |||||||| ||||| |    
T  26331988 ggatttcctttaacaactttttgtccatatttcctccacctaaagccatcatcaaggatatcaatttcacttgtagtttgaactacaactctaggttctt 26332087  T
Q  404 taacagttctac 415  Q
    ||||||||||||    
T  26332088 taacagttctac 26332099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 83558 - 83478
Alignment:
Q  182 taaatactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||| || ||||  |||||||||||||||||| |||| |||| ||| ||||| ||||||||||||||||||||||    
T  83558 taaatactccctccgtctctaaataatagtcgtttaaggtttatgcacaattattaaggaaatgattaattgtgttgattt 83478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 16560526 - 16560606
Alignment:
Q  182 taaatactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||| || ||||  ||||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||| ||||    
T  16560526 taaatactccctccgtctctaaataatagtcatttaagatttatgcacgattattaaggaaatgattaattgtgtttattt 16560606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 16605136 - 16605056
Alignment:
Q  182 taaatactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||| || ||||  ||||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||| ||||    
T  16605136 taaatactccctccgtctctaaataatagtcatttaagatttatgcacgattattaaggaaatgattaattgtgtttattt 16605056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 44180358 - 44180298
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||||||||| ||||  ||||||| ||||||||||||||||||||||||||||    
T  44180358 aaataatagtcgtttaaggtttatacacgattattaagaaaatgattaattgtgttgattt 44180298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 46211604 - 46211524
Alignment:
Q  182 taaatactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||| || ||||  |||||||||||||||||| |||| |||| ||| ||||| ||||||||||||||||||||||    
T  46211604 taaatactccctccgtctttaaataatagtcgtttaaggtttatgcacaattattaaggaaatgattaattgtgttgattt 46211524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 9786160 - 9786081
Alignment:
Q  183 aaatactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||| ||||  |||||||||||||||||| | |  |||||||| ||||| ||||||||||||||||||||||    
T  9786160 aaatactccatccgtctctaaataatagtcgtttaaggtctgtgcacgattattaaggaaatgattaattgtgttgattt 9786081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 195 - 262
Target Start/End: Complemental strand, 16904539 - 16904472
Alignment:
Q  195 tgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||| ||||||||||||||||||| |||  |||  ||||||||||||||||||||||||||||||||    
T  16904539 tgtctcaaaataatagtcgtttaaggtttgtgcaaaatttttaagaaaatgattaattgtgttgattt 16904472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 26331456 - 26331535
Alignment:
Q  4 tggttatgtttcccttcatatgttgtgattactgctttaatatcatgtgctgctctctcaacatgttttctcacagtaca 83  Q
    ||||| ||||||||||| || |||||||| || ||||| ||||||||||| ||||| |||||||||||||||||| ||||    
T  26331456 tggttgtgtttcccttcgtaagttgtgatcacggctttgatatcatgtgcagctctttcaacatgttttctcacattaca 26331535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 185 - 262
Target Start/End: Original strand, 28202268 - 28202345
Alignment:
Q  185 atactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||| ||||  |||||||||| ||||||| |||| ||||| || |||||||||| |||||||||||||||||    
T  28202268 atactccatccgtctctaaataatagttgtttaaggtttatgcacggttattaagaaaataattaattgtgttgattt 28202345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 185 - 262
Target Start/End: Complemental strand, 42935831 - 42935754
Alignment:
Q  185 atactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||| ||| ||||  |||||||||||||||||| || | ||||| || ||||||||||||||||||||||||||||    
T  42935831 atactctatccgtctctaaataatagtcgtttaaggttgatgcacggttattaagaaaatgattaattgtgttgattt 42935754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 759048 - 759127
Alignment:
Q  182 taaatactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||| |||||  ||||||||||| |||||| |||| |||| ||| ||||| ||||||||||||||||||||||    
T  759048 taaatactccat-tgtctctaaataatagtcatttaaggtttatgcacaattattaaggaaatgattaattgtgttgattt 759127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 28103905 - 28103826
Alignment:
Q  183 aaatactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||| || |||| | |||| | |||||||||| |||  |||||||| ||||||||||||||||||||||||||||    
T  28103905 aaatactccctccgtctcacaatatttgtcgtttaaggtttgtgcacgattattaagaaaatgattaattgtgttgattt 28103826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 185 - 262
Target Start/End: Original strand, 24516248 - 24516325
Alignment:
Q  185 atactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||| ||||||| | |||  |||||||||||| ||||  ||||||| |||| |||||||||||||||||||||||    
T  24516248 atactccctctgtctcataattttagtcgtttaaggtttatacacgattattaataaaatgattaattgtgttgattt 24516325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 185 - 262
Target Start/End: Original strand, 32018671 - 32018748
Alignment:
Q  185 atactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||| ||||| |||||||||||| ||||| ||||  | |||||||||||  |||||| |||||||||||||||    
T  32018671 atactccatttgtcttaaaataatagtcatttaaaatttttgtacgatttttaatgaaatgaataattgtgttgattt 32018748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 189 - 262
Target Start/End: Complemental strand, 44424301 - 44424228
Alignment:
Q  189 tccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||| ||||  |||||||||||||||||| || | ||||| || ||||| ||||||||||||||||||||||    
T  44424301 tccatccgtctctaaataatagtcgtttaaggttgatgcacggttattaaggaaatgattaattgtgttgattt 44424228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 13962112 - 13962052
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||||| |||||| |||| ||||| || ||||| ||||||||||||||||||||||    
T  13962112 aaataatagtcatttaaggtttatgcacgtttattaaggaaatgattaattgtgttgattt 13962052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 26974182 - 26974122
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||| ||||||||||||| |||  |||||||| ||||| ||||||||||||||||||||||    
T  26974182 aaattatagtcgtttaaggtttgtgcacgattattaaggaaatgattaattgtgttgattt 26974122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 262
Target Start/End: Original strand, 34100507 - 34100583
Alignment:
Q  186 tactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||| |||| | |||| |||| |||||||||||    |||||| ||||||||||||||||||||||||||||    
T  34100507 tactccatccgtctcacaatattagttgtttaagatttgtcaacgattattaagaaaatgattaattgtgttgattt 34100583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 40076468 - 40076408
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||||||||| |||| |||||||| ||||  ||||||||||||||||| ||||    
T  40076468 aaataatagtcgtttaaggtttatgcacgattattaaagaaatgattaattgtgttaattt 40076408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 21390466 - 21390388
Alignment:
Q  186 tactccatctgtctgaaaataata--gtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||| ||||  ||||||||  |||||||||| |||| |||||||| ||||| ||||||||||||||||| ||||    
T  21390466 tactccatccgtctctaaataatacagtcgtttaaggtttatgcacgattattaaggaaatgattaattgtgttaattt 21390388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 211 - 262
Target Start/End: Complemental strand, 38391892 - 38391841
Alignment:
Q  211 tcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||| |||| |||| ||| ||||||||||||||||||||||||||||    
T  38391892 tcgtttaaggtttatgcacaattattaagaaaatgattaattgtgttgattt 38391841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 21759966 - 21760020
Alignment:
Q  208 tagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||| |||  ||| |||| ||||||||||||||||||||||||||||    
T  21759966 tagtcgtttaaggtttgtgcatgattattaagaaaatgattaattgtgttgattt 21760020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 201 - 262
Target Start/End: Complemental strand, 2459623 - 2459562
Alignment:
Q  201 aaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||| |||||||||||  |||  |||||||| ||||| ||||||||||||||||||||||    
T  2459623 aaaatattagtcgtttaatgtttgtgcacgattattaaggaaatgattaattgtgttgattt 2459562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 185 - 262
Target Start/End: Complemental strand, 27904936 - 27904859
Alignment:
Q  185 atactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||| ||||| ||||||||||| || ||||||||| ||| |||||||||  |||| |||| |||| |||||||    
T  27904936 atactccatatgtcttaaaataatagttgtctaagatttatgcaagatttttaaacaaataattacttgtattgattt 27904859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 226 - 262
Target Start/End: Complemental strand, 5524509 - 5524473
Alignment:
Q  226 gcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||| ||||||||||||||||||||||||||||    
T  5524509 gcacgattattaagaaaatgattaattgtgttgattt 5524473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 206 - 262
Target Start/End: Complemental strand, 48609011 - 48608955
Alignment:
Q  206 aatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||||| || |||| ||| |||| ||||| ||||||||||||||||||||||    
T  48609011 aatagtcgtttgaggtttatgcatgattattaaggaaatgattaattgtgttgattt 48608955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 22738853 - 22738794
Alignment:
Q  203 aataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||| |||||||||||| |||| |||||||| ||||  |||||||||||||||| |||||    
T  22738853 aatattagtcgtttaaggtttatgcacgattattaaagaaatgattaattgtgtagattt 22738794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 41506043 - 41506101
Alignment:
Q  203 aataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||||||| ||| |||| |||||||| ||||| ||||||||||||||||| ||||    
T  41506043 aataatagtcgtt-aaggtttatgcacgattattaaggaaatgattaattgtgttaattt 41506101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 184 - 262
Target Start/End: Original strand, 2850839 - 2850917
Alignment:
Q  184 aatactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||||| ||||  |||| ||||||||||| | |||  ||| |||| ||||| |||||||||||| |||||||||    
T  2850839 aatactccatccgtctctaaattatagtcgtttatggtttgtgcatgattattaaggaaatgattaattatgttgattt 2850917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 292 - 374
Target Start/End: Original strand, 30394764 - 30394846
Alignment:
Q  292 taccttgggtttggatttcctttaactactttctgtccatatttcctccacctatatccatcatcaagaatatcaatttcact 374  Q
    ||||||||||||||||| ||||| || || ||||||||||| || | ||| | ||| ||||||||||| | |||||| |||||    
T  30394764 taccttgggtttggattccctttgacaaccttctgtccatactttcgccagcgataaccatcatcaagtacatcaatgtcact 30394846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 228 - 262
Target Start/End: Complemental strand, 49101793 - 49101759
Alignment:
Q  228 acgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||||||||||||||||||||| ||||    
T  49101793 acgatttttaagaaaatgattaattgtgtttattt 49101759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 385
Target Start/End: Complemental strand, 9606907 - 9606850
Alignment:
Q  328 ccatatttcctccacctatatccatcatcaagaatatcaatttcacttgtagtttgaa 385  Q
    |||||||||||||| ||||| ||||||||||| ||||||| || |||  |||||||||    
T  9606907 ccatatttcctccatctataaccatcatcaagtatatcaacttgactcctagtttgaa 9606850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 385
Target Start/End: Complemental strand, 9834478 - 9834421
Alignment:
Q  328 ccatatttcctccacctatatccatcatcaagaatatcaatttcacttgtagtttgaa 385  Q
    |||||||||||||| ||||| ||||||||||| ||||||| || |||  |||||||||    
T  9834478 ccatatttcctccatctataaccatcatcaagtatatcaacttgactcctagtttgaa 9834421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 226 - 262
Target Start/End: Original strand, 19271733 - 19271769
Alignment:
Q  226 gcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||| |||| |||||||||||||||||||||||    
T  19271733 gcacgattattaaaaaaatgattaattgtgttgattt 19271769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 321 - 357
Target Start/End: Original strand, 22585727 - 22585763
Alignment:
Q  321 tttctgtccatatttcctccacctatatccatcatca 357  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  22585727 tttctgaccatacttcctccacctatatccatcatca 22585763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 27921141 - 27921081
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||| ||||||| || | ||||  || |||||||||||||||||| |||||||||    
T  27921141 aaataatagttgtttaaggttgatgcacagttattaagaaaatgattaattatgttgattt 27921081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 34947653 - 34947593
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||||||||| |||  ||| | || ||||  ||||||||||||||||||||||    
T  34947653 aaataatagtcgtttaaggtttgtgcatgtttattaaagaaatgattaattgtgttgattt 34947593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 292 - 402
Target Start/End: Original strand, 26966152 - 26966262
Alignment:
Q  292 taccttgggtttggatttcctttaactactttctgtccatatttcctccacctatatccatcatcaagaatatcaatttcacttgtagtttgaaccacaa 391  Q
    |||||||| ||||||||||| || ||||||||||| |||||||||||||| || ||||||||||| ||||||||||| |||||||| |||||||| ||||    
T  26966152 taccttggatttggatttccctttactactttctgcccatatttcctccatctgtatccatcatctagaatatcaatgtcacttgttgtttgaacaacaa 26966251  T
Q  392 ctcttggttcc 402  Q
    |||| ||||||    
T  26966252 ctctaggttcc 26966262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 292 - 395
Target Start/End: Complemental strand, 2057106 - 2057003
Alignment:
Q  292 taccttgggtttggatttcctttaactactttctgtccatatttcctccacctatatccatcatcaagaatatcaatttcacttgtagtttgaaccacaa 391  Q
    ||||||||||| ||||||||||| || ||||||||||||||||||| ||||| ||| |||||||| || ||||| | |||||| ||||| ||||| ||||    
T  2057106 taccttgggttgggatttcctttgacaactttctgtccatatttccgccaccgataaccatcatcgaggatatctacttcactggtagtctgaacaacaa 2057007  T
Q  392 ctct 395  Q
    ||||    
T  2057006 ctct 2057003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 17652913 - 17652834
Alignment:
Q  183 aaatactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||| ||||  ||||||||||||||| || |||| |||||||| ||||| ||||||||||||||||||||||    
T  17652913 aaatactccatccgtctctaaataatagtcgtttgaggtttatgcacgattattaaggaaatgattaattgtgttgattt 17652834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 184 - 262
Target Start/End: Complemental strand, 37497656 - 37497578
Alignment:
Q  184 aatactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||||| ||||  |||||||| |||||||||||||| |||||||| ||||| |||||||| |||||||||||||    
T  37497656 aatactccatccgtctctaaataataatcgtttaagatttatgcacgattattaaggaaatgatttattgtgttgattt 37497578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 8679023 - 8679083
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||| |||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||    
T  8679023 aaattatagtcgtttaagatttatgcacgattattaaggaaatgattaattgtgttgattt 8679083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 24569069 - 24569129
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||| ||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||    
T  24569069 aaattatagtcgcttaagatttatgcacgattattaagaaaatgattaattgtgttgattt 24569129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 29023938 - 29023995
Alignment:
Q  205 taatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||||||||| |||| |||||||| |||| |||||||||||||||||||||||    
T  29023938 taatagtcgtttaaggtttatgcacgattattaaaaaaatgattaattgtgttgattt 29023995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 10366611 - 10366671
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||| ||||||||||| |||  |||||||| ||||||||||||||||||||||||||||    
T  10366611 aaataacagtcgtttaaggtttgtgcacgattattaagaaaatgattaattgtgttgattt 10366671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 37312095 - 37312036
Alignment:
Q  203 aataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||| |||||||||||| |||| |||||||| ||||| ||||||||||||||||||||||    
T  37312095 aatattagtcgtttaaggtttatgcacgattattaaggaaatgattaattgtgttgattt 37312036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 185 - 262
Target Start/End: Complemental strand, 19823174 - 19823097
Alignment:
Q  185 atactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||| |||||||  |||| ||||| ||||||| |||  |||||||| ||||| ||||||||||||||||||||||    
T  19823174 atactccctctgtctctaaattatagttgtttaaggtttgtgcacgattattaaggaaatgattaattgtgttgattt 19823097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 189 - 262
Target Start/End: Original strand, 33491039 - 33491112
Alignment:
Q  189 tccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||| |||| | |||| |||||||||||| |||  |||||||| ||||| ||||||||||||||||||||||    
T  33491039 tccatccgtctcacaatattagtcgtttaaggtttgtgcacgattattaaggaaatgattaattgtgttgattt 33491112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 185 - 262
Target Start/End: Complemental strand, 45711013 - 45710936
Alignment:
Q  185 atactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||| || ||||  |||||||||||||||||| || | ||||| || |||||||||||||||||| |||||||||    
T  45711013 atactccttcggtctctaaataatagtcgtttaaggttgatgcacggttgttaagaaaatgattaattatgttgattt 45710936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 11905968 - 11905908
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||| ||||||||  |||| |||||||| ||||||||||||||||||||||| ||||    
T  11905968 aaataatactcgtttaaagtttatgcacgattattaagaaaatgattaattgtgttaattt 11905908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 12736540 - 12736600
Alignment:
Q  201 aaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgatt 261  Q
    ||||||||||| ||||||  |||  |||||||||||||| |||||||||||||||||||||    
T  12736540 aaaataatagttgtttaaagtttgtgcacgatttttaaggaaatgattaattgtgttgatt 12736600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 211 - 262
Target Start/End: Complemental strand, 27471472 - 27471421
Alignment:
Q  211 tcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||||  |||||||| |||||||||||||||||| |||||||||    
T  27471472 tcgtttaagatttgtgcacgattattaagaaaatgattaattatgttgattt 27471421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 262
Target Start/End: Complemental strand, 19609451 - 19609385
Alignment:
Q  196 gtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||| ||||||||| |||||||||||||  | | || ||||||||||||||||| ||||||||||||    
T  19609451 gtctcaaaataataatcgtttaagatttgtgtatgaattttaagaaaatgattatttgtgttgattt 19609385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 262
Target Start/End: Complemental strand, 40462464 - 40462398
Alignment:
Q  196 gtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||| ||||||||| | ||||||| ||| |||  ||||||||||||||||||||||||| |||||||    
T  40462464 gtctcaaaataataattgtttaaggtttgagcgtgatttttaagaaaatgattaattgttttgattt 40462398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 185 - 262
Target Start/End: Complemental strand, 1778805 - 1778728
Alignment:
Q  185 atactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||| || |||| | |||| |||||||||||| |||  ||| |||| ||||| ||||||||||||||||||||||    
T  1778805 atactccctccgtctcacaatattagtcgtttaaggtttgtgcatgattattaaggaaatgattaattgtgttgattt 1778728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 201 - 262
Target Start/End: Complemental strand, 14194702 - 14194641
Alignment:
Q  201 aaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||| ||||||||||| |||  |||||||||||||  ||||||| ||||||||||||||    
T  14194702 aaaataacagtcgtttaaggtttgtgcacgatttttaaagaaatgatcaattgtgttgattt 14194641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 37695634 - 37695695
Alignment:
Q  202 aaataatagtcgtttaagatttaa-gcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||||||||| |||   |||||||| ||||| ||||||||||||||||||||||    
T  37695634 aaataatagtcgtttaaggttttgtgcacgattattaaggaaatgattaattgtgttgattt 37695695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 201 - 262
Target Start/End: Complemental strand, 38795491 - 38795430
Alignment:
Q  201 aaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||||||||||||  |||  ||||||| |||||| ||||||||||||||||| ||||    
T  38795491 aaaataatagtcgtttaatgtttgtgcacgatatttaaggaaatgattaattgtgtttattt 38795430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 11632225 - 11632167
Alignment:
Q  203 aataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||| ||||| ||||||||||  |||||||| |||| |||||||||||||||||||||||    
T  11632225 aatattagtcatttaagatttgtgcacgattattaa-aaaatgattaattgtgttgattt 11632167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 262
Target Start/End: Original strand, 43253841 - 43253892
Alignment:
Q  211 tcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||| |||  |||||||| ||||| ||||||||||||||||||||||    
T  43253841 tcgtttaaggtttgtgcacgattattaaggaaatgattaattgtgttgattt 43253892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 228 - 262
Target Start/End: Complemental strand, 19612028 - 19611994
Alignment:
Q  228 acgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||||||||| |||||||||||||||||||    
T  19612028 acgatttttaagaaagtgattaattgtgttgattt 19611994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 34957649 - 34957592
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttga 259  Q
    |||||||||||||||||| |||| | || |||  |||| |||||||||||||||||||    
T  34957649 aaataatagtcgtttaaggtttatggacaattactaaggaaatgattaattgtgttga 34957592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 262
Target Start/End: Complemental strand, 53560380 - 53560303
Alignment:
Q  185 atactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||| ||| ||||  |||||||||| ||||||| || | |||||||  ||||| |||||||||||| |||||||||    
T  53560380 atactcaatccgtctctaaataatagttgtttaaggttgatgcacgatgattaaggaaatgattaattatgttgattt 53560303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 30190633 - 30190689
Alignment:
Q  206 aatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||||| |||  ||||| || | ||| ||||||||||||||||||||||    
T  30190633 aatagtcgtttaaggtttgtgcacggttatgaaggaaatgattaattgtgttgattt 30190689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 52291039 - 52290979
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||| ||||||||| || | | ||| || |||||||||||||||||||| |||||||    
T  52291039 aaataataatcgtttaaggttgatgtacggttattaagaaaatgattaattgtattgattt 52290979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 7e-23; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 292 - 415
Target Start/End: Original strand, 31614625 - 31614748
Alignment:
Q  292 taccttgggtttggatttcctttaactactttctgtccatatttcctccacctatatccatcatcaagaatatcaatttcacttgtagtttgaaccacaa 391  Q
    |||||||| |||||||| || ||||| ||||||||||||||||||||||| || || |||||||| || |||||||| |||||||| || ||||| ||||    
T  31614625 taccttggatttggattgcccttaacaactttctgtccatatttcctccatctgtaaccatcatccaggatatcaatgtcacttgttgtctgaactacaa 31614724  T
Q  392 ctcttggttccttaacagttctac 415  Q
    |||| |||||  | ||||||||||    
T  31614725 ctctaggttctctcacagttctac 31614748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 186 - 262
Target Start/End: Original strand, 38508138 - 38508214
Alignment:
Q  186 tactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||| |||| |||||||||||||||||||||||  || ||||||||||||||||||||||||||||| ||||    
T  38508138 tactccatccgtctcaaaataatagtcgtttaagatttgtgctcgatttttaagaaaatgattaattgtgttaattt 38508214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 42922834 - 42922894
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||| |||||||||||||||||  ||| |||| ||||||||||||||||||||||||||||    
T  42922834 aaattatagtcgtttaagatttgtgcatgattattaagaaaatgattaattgtgttgattt 42922894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 181 - 262
Target Start/End: Complemental strand, 843604 - 843523
Alignment:
Q  181 ttaaatactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||||| || |||| | ||||||| | ||||||| |||  |||||||| |||||||||||||||||| |||||||||    
T  843604 ttaaatactccctccgtctcacaataataattgtttaaggtttgtgcacgattattaagaaaatgattaattttgttgattt 843523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 40900064 - 40900004
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||||| |||||| |||| ||||| || ||||| ||||||||||||||||||||||    
T  40900064 aaataatagtcatttaaggtttatgcacggttattaaggaaatgattaattgtgttgattt 40900004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 6753629 - 6753676
Alignment:
Q  205 taatagtcgtttaagatttaagcacgatttttaagaaaatgattaatt 252  Q
    ||||||||||||||| |||| |||||||| ||||||||||||||||||    
T  6753629 taatagtcgtttaaggtttatgcacgattattaagaaaatgattaatt 6753676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 9515891 - 9515832
Alignment:
Q  203 aataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||| |||||||||||| |||  |||||||| |||||| |||||||||||||||||||||    
T  9515891 aatattagtcgtttaaggtttgtgcacgattattaagataatgattaattgtgttgattt 9515832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 29570537 - 29570478
Alignment:
Q  203 aataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||| ||||||||||||||||  |||||||| ||||  ||||||||||||||||||||||    
T  29570537 aatattagtcgtttaagatttgtgcacgattattaaagaaatgattaattgtgttgattt 29570478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 2232046 - 2232100
Alignment:
Q  208 tagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||| |||  |||||||| |||||||||||| |||||||||||||||    
T  2232046 tagtcgtttaaggtttgtgcacgattattaagaaaatgaataattgtgttgattt 2232100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 15818453 - 15818507
Alignment:
Q  208 tagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||| |||| |||||||| ||||| ||||| ||||||||||||||||    
T  15818453 tagtcgtttaaggtttatgcacgattattaaggaaatgtttaattgtgttgattt 15818507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 19930078 - 19930032
Alignment:
Q  216 taagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||| |||||||| |||||||||||||||||| |||||||||    
T  19930078 taagatttatgcacgattattaagaaaatgattaattttgttgattt 19930032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 185 - 262
Target Start/End: Original strand, 7827876 - 7827953
Alignment:
Q  185 atactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||| || ||||  |||||||| ||||||||| |||   ||||||| |||||||||| |||||||||||||||||    
T  7827876 atactccctccgtctctaaataataatcgtttaaggtttgtacacgattattaagaaaataattaattgtgttgattt 7827953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 41478973 - 41478920
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtg 255  Q
    ||||||||||||| |||| |||  || |||||||||||||||||||||||||||    
T  41478973 aaataatagtcgtctaaggtttgtgcgcgatttttaagaaaatgattaattgtg 41478920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 41492448 - 41492395
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtg 255  Q
    ||||||||||||| |||| |||  || |||||||||||||||||||||||||||    
T  41492448 aaataatagtcgtctaaggtttgtgcgcgatttttaagaaaatgattaattgtg 41492395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 2588035 - 2588095
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||||||||| || | ||||  || ||||| ||||||||||||||||||||||    
T  2588035 aaataatagtcgtttaaggttgatgcacagttattaaggaaatgattaattgtgttgattt 2588095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 21060776 - 21060716
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||||||||| |||| ||||| || ||| | ||||||||||||||||| ||||    
T  21060776 aaataatagtcgtttaaggtttatgcacggttattagggaaatgattaattgtgtttattt 21060716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 32440303 - 32440227
Alignment:
Q  186 tactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||| || |||| ||||||||||||||| ||| |||  ||| |||||||||  ||||||||||||||||| ||||    
T  32440303 tactccctccgtctcaaaataatagtcgttaaaggtttgtgcatgatttttaaagaaatgattaattgtgttaattt 32440227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 226 - 262
Target Start/End: Original strand, 40530215 - 40530251
Alignment:
Q  226 gcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||| ||||||||||||||||||||||||||||    
T  40530215 gcacgattattaagaaaatgattaattgtgttgattt 40530251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 262
Target Start/End: Original strand, 1248554 - 1248631
Alignment:
Q  185 atactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||| |||| ||||  ||| ||||||||||||||||||  ||||| || ||||| |||| ||||||| |||||||||    
T  1248554 atacttcatccgtctttaaaaaatagtcgtttaagatttgtgcacggttattaaggaaattattaattatgttgattt 1248631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 11796133 - 11796194
Alignment:
Q  201 aaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||||| ||||||| |||  |||| || || ||||||||| ||||||||||||||||    
T  11796133 aaaataatagtggtttaaggtttgcgcacaatgttaaagaaaatggttaattgtgttgattt 11796194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 262
Target Start/End: Complemental strand, 27542958 - 27542881
Alignment:
Q  185 atactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||  ||||  |||| || |||||||||| |||  |||||||| ||||| |||||||| |||||||||||||    
T  27542958 atactccattcgtctctaaattattgtcgtttaaggtttgtgcacgattattaaggaaatgattgattgtgttgattt 27542881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 262
Target Start/End: Complemental strand, 31655216 - 31655139
Alignment:
Q  185 atactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||| |||| | |||| |||||||||||  |||  | |||||| ||||  ||||||||||||||||||||||    
T  31655216 atactccatcggtctcacaatattagtcgtttaaagtttgtgtacgattattaaagaaatgattaattgtgttgattt 31655139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 4818689 - 4818637
Alignment:
Q  210 gtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||| |||  |||||||| ||||| |||| |||||||||||||||||    
T  4818689 gtcgtttaaggtttgtgcacgattattaaggaaataattaattgtgttgattt 4818637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 307 - 383
Target Start/End: Original strand, 18875591 - 18875667
Alignment:
Q  307 tttcctttaactactttctgtccatatttcctccacctatatccatcatcaagaatatcaatttcacttgtagtttg 383  Q
    |||||||| || ||||||||||||||||| | ||| ||||| |||||||| |  | ||||| |||||| ||||||||    
T  18875591 tttcctttgacaactttctgtccatattttcgccatctataaccatcatctaagagatcaacttcactggtagtttg 18875667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 30512652 - 30512712
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||| |||||||| |||  |||| |||||||| ||||| |||||||||||||| |||||||    
T  30512652 aaattatagtcgtataaagtttatgcacgattattaaggaaatgattaattgtattgattt 30512712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 30552992 - 30553052
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||| |||||||| |||  |||| |||||||| ||||| |||||||||||||| |||||||    
T  30552992 aaattatagtcgtataaagtttatgcacgattattaaggaaatgattaattgtattgattt 30553052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 320 - 380
Target Start/End: Original strand, 39835166 - 39835226
Alignment:
Q  320 ctttctgtccatatttcctccacctatatccatcatcaagaatatcaatttcacttgtagt 380  Q
    |||||||||||||||| ||||| ||||||||||| |||||   |||||| |||||| ||||    
T  39835166 ctttctgtccatattttctccatctatatccatcttcaaggtgatcaatctcacttttagt 39835226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 29363472 - 29363392
Alignment:
Q  182 taaatactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||| || ||||  |||||||||||||||||| |||| |||| ||| ||||||||||||||||||||||||||||    
T  29363472 taaatactccctccgtctttaaataatagtcgtttaaggtttatgcacaattattaagaaaatgattaattgtgttgattt 29363392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 185 - 262
Target Start/End: Original strand, 32440596 - 32440673
Alignment:
Q  185 atactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||| || ||||  ||||||||||||||||||||||| ||||| || || || ||||||||||||||||||||||    
T  32440596 atactccctccgtctctaaataatagtcgtttaagatttatgcacggttatttaggaaatgattaattgtgttgattt 32440673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 11655914 - 11655974
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||| ||||||||||| |||| ||||| || ||||||||||||||||||||||||||||    
T  11655914 aaataagagtcgtttaaggtttatgcacggttattaagaaaatgattaattgtgttgattt 11655974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 3291715 - 3291788
Alignment:
Q  181 ttaaatactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgt 254  Q
    |||| ||||||||| ||||  |||||||||||||||||| |||  |||||||| ||||| ||||||||||||||    
T  3291715 ttaattactccatcggtctctaaataatagtcgtttaaggtttttgcacgattattaaggaaatgattaattgt 3291788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 6802077 - 6802017
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||||||||||||||| | ||| | || |||||||||||||||||| |||||||||    
T  6802077 aaataatagtcgtttaagattgatgcatggttattaagaaaatgattaattatgttgattt 6802017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 262
Target Start/End: Complemental strand, 7920392 - 7920324
Alignment:
Q  194 ctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||| |||||||||  ||||||||||||  |||||||||||||  |||||||||||| |||||||||    
T  7920392 ctgtctcaaaataatatccgtttaagatttgtgcacgatttttaaagaaatgattaattttgttgattt 7920324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 21010323 - 21010263
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||| ||||||| |||| |||| ||| ||||||||||||||||||||||| ||||    
T  21010323 aaataatagttgtttaaggtttatgcacaattattaagaaaatgattaattgtgttaattt 21010263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 262
Target Start/End: Original strand, 1063561 - 1063631
Alignment:
Q  192 atctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||| | |||||| |||||||||||  |||| | |  ||||||||||||||||||||||||||||||||    
T  1063561 atctgtatcaaaatagtagtcgtttaaagtttatgtataatttttaagaaaatgattaattgtgttgattt 1063631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 1781939 - 1781890
Alignment:
Q  211 tcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgat 260  Q
    ||||||||| |||| |||||||| |||||||||||||||||| |||||||    
T  1781939 tcgtttaaggtttatgcacgattgttaagaaaatgattaattatgttgat 1781890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 185 - 262
Target Start/End: Original strand, 31894161 - 31894238
Alignment:
Q  185 atactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||| || |||| | |||| || |||||||||||||  | | |||| ||||||||||||||||||||||||||||    
T  31894161 atactccctccgtctcacaatattaatcgtttaagatttgtgtatgattattaagaaaatgattaattgtgttgattt 31894238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 6834337 - 6834397
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||||  |||||  |||| |||||||| |||||||||| |||||||||||||||||    
T  6834337 aaataatagttctttaaagtttatgcacgattattaagaaaataattaattgtgttgattt 6834397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 23142801 - 23142753
Alignment:
Q  214 tttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||| ||||  ||||||| ||||||||||||||||||||||||||||    
T  23142801 tttaaggtttatccacgattattaagaaaatgattaattgtgttgattt 23142753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 27448124 - 27448184
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||| ||||||||| |||  |||| ||| ||||| ||||||||||||||||||||||    
T  27448124 aaataataatcgtttaaggtttttgcacaattattaaggaaatgattaattgtgttgattt 27448184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 3720210 - 3720269
Alignment:
Q  203 aataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||| |||||||||||| |||  |||||||| ||||  ||||||||||||||||||||||    
T  3720210 aatattagtcgtttaaggtttgtgcacgattattaatgaaatgattaattgtgttgattt 3720269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 184 - 262
Target Start/End: Complemental strand, 13087694 - 13087616
Alignment:
Q  184 aatactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||| || ||||  |||||| ||||||||||| || |   |||||| |||||||| |||||||||||||||||||    
T  13087694 aatactccctccgtctctaaataaaagtcgtttaaggttcataaacgattattaagaaagtgattaattgtgttgattt 13087616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 15058279 - 15058213
Alignment:
Q  186 tactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaatt 252  Q
    |||||| |||||||   |||| |||||||||||| |||  |||||||| ||||||||||||||||||    
T  15058279 tactccctctgtctcgcaatattagtcgtttaaggtttgtgcacgattattaagaaaatgattaatt 15058213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 26093556 - 26093480
Alignment:
Q  186 tactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||| |||  ||||||| ||||||||||||||  |||||||| ||||||||||||||||||||||||||||    
T  26093556 tactccatctctctctaaataatggtcgtttaagatttgtgcacgattattaagaaaatgattaattgtgttgattt 26093480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 193 - 262
Target Start/End: Original strand, 30754904 - 30754973
Alignment:
Q  193 tctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||  |||| |||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||    
T  30754904 tctgtctttaaattatagtcgtttaagatttatgcacgattattaaggaaatgattaattgtgttgattt 30754973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 185 - 262
Target Start/End: Complemental strand, 41080761 - 41080684
Alignment:
Q  185 atactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||| ||||| ||||||||||||| ||||| |||| ||| || |||||| |||||||||||||||||||||||    
T  41080761 atactccatatgtctcaaaataatagtcgattaaggtttatgcatgaattttaaaaaaatgattaattgtgttgattt 41080684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 16395023 - 16395079
Alignment:
Q  206 aatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||    
T  16395023 aatagtcgtttaaggtttatgcacgattattaagaaaatgattaattgtgttgattt 16395079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 195 - 262
Target Start/End: Original strand, 6160424 - 6160491
Alignment:
Q  195 tgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||| ||||||||||||||||| || ||  | |||||||||||||||||||||||||||||||||||    
T  6160424 tgtctcaaaataatagtcgtttacgacttgtgtacgatttttaagaaaatgattaattgtgttgattt 6160491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 38787487 - 38787427
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||||||||| |||| |||||||| ||||| |||||||| |||||||||||||    
T  38787487 aaataatagtcgtttaaggtttatgcacgattattaaggaaatgattgattgtgttgattt 38787427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 49223958 - 49224018
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||||||||||||||| | ||||| ||  |||||||||||||||||||||||||||    
T  49223958 aaataatagtcgtttaagattgatgcacggttactaagaaaatgattaattgtgttgattt 49224018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 196 - 262
Target Start/End: Original strand, 6267822 - 6267888
Alignment:
Q  196 gtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||| ||||||||||||||||||| |||  |||| ||||||||  ||||||||||||||||||||||    
T  6267822 gtctcaaaataatagtcgtttaaggtttgtgcactatttttaaagaaatgattaattgtgttgattt 6267888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 40144819 - 40144879
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||||| |||||| | ||||  || ||||||||||||||||||||||||||||    
T  40144819 aaataatagtcgttcaagattgatgcacagttattaagaaaatgattaattgtgttgattt 40144879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 12039227 - 12039168
Alignment:
Q  203 aataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||| |||||||||||| |||  |||||||| ||||| ||||||||||||||||||||||    
T  12039227 aatattagtcgtttaaggtttgtgcacgattattaaggaaatgattaattgtgttgattt 12039168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 183 - 262
Target Start/End: Original strand, 32970520 - 32970599
Alignment:
Q  183 aaatactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||| ||| ||| ||||||||| ||||||||| ||     |||||| ||||||||||||||||||||||||||||    
T  32970520 aaatactccctctatctcaaaataatattcgtttaaggttcgtatacgattattaagaaaatgattaattgtgttgattt 32970599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 35367622 - 35367677
Alignment:
Q  208 tagtcgtttaaga-tttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||||||  |||| |||||||| ||||||||||||||||||||||||||||    
T  35367622 tagtcgtttaagcgtttatgcacgattattaagaaaatgattaattgtgttgattt 35367677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 43500762 - 43500816
Alignment:
Q  208 tagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||| |||| |||||||| ||||| |||| |||||||||||||||||    
T  43500762 tagtcgtttaaggtttatgcacgattattaaggaaattattaattgtgttgattt 43500816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 185 - 262
Target Start/End: Original strand, 31978607 - 31978684
Alignment:
Q  185 atactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||| || ||||  |||| ||||||||||||  |||  |||||||| ||||||||| ||||||||||||||||||    
T  31978607 atactccctccgtctctaaattatagtcgtttaaagtttgtgcacgattattaagaaaaagattaattgtgttgattt 31978684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 5179371 - 5179431
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||| ||||||||||| |||   ||||||| |||| |||||||||||||||||||||||    
T  5179371 aaataacagtcgtttaaggtttgtacacgattcttaacaaaatgattaattgtgttgattt 5179431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 186 - 262
Target Start/End: Original strand, 24991609 - 24991685
Alignment:
Q  186 tactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||| || |||| | |||| |||||||||||| |||   ||||||| ||||| ||||||||||||||||||||||    
T  24991609 tactccctccgtctcacaatattagtcgtttaaggtttgtacacgattattaaggaaatgattaattgtgttgattt 24991685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 28749125 - 28749077
Alignment:
Q  214 tttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||||  |||||||| ||||| ||||||||||||||||||||||    
T  28749125 tttaagatttgtgcacgattattaaggaaatgattaattgtgttgattt 28749077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 35538781 - 35538729
Alignment:
Q  210 gtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||||||   || |||||||||||||| |||||||||||||||||    
T  35538781 gtcgtttaagatttatttacaatttttaagaaaattattaattgtgttgattt 35538729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 37506273 - 37506213
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||| ||||||||| || | ||||| || ||||| ||||||||||||||||||||||    
T  37506273 aaataataatcgtttaaggttgatgcacggttattaaggaaatgattaattgtgttgattt 37506213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 39864257 - 39864197
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||| ||||||||||||  |||  |||||||| ||||| ||||||||||||||||||||||    
T  39864257 aaattatagtcgtttaaagtttgtgcacgattattaaggaaatgattaattgtgttgattt 39864197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 42410140 - 42410080
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||| ||||||| || | ||||| || |||| |||||||||||||||||||||||    
T  42410140 aaataatagttgtttaaggttgatgcacggttattaaaaaaatgattaattgtgttgattt 42410080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 45331487 - 45331427
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||||||||| || | ||||| || |||||||||| ||||||| |||||||||    
T  45331487 aaataatagtcgtttaaggttgacgcacggttattaagaaaataattaattatgttgattt 45331427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 262
Target Start/End: Original strand, 21909987 - 21910038
Alignment:
Q  211 tcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||| |||| |||| ||| ||||| ||||||||||||||||||||||    
T  21909987 tcgtttaaggtttatgcacaattattaaggaaatgattaattgtgttgattt 21910038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 23168966 - 23169025
Alignment:
Q  203 aataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||| |||||||||||  |||  |||||||| |||||||||| |||||||||||||||||    
T  23168966 aatattagtcgtttaaagtttgtgcacgattattaagaaaataattaattgtgttgattt 23169025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 7439881 - 7439935
Alignment:
Q  196 gtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaa 250  Q
    |||| ||||||||||||||||||| |||  ||||||||||||  |||||||||||    
T  7439881 gtctcaaaataatagtcgtttaaggtttttgcacgatttttagaaaaatgattaa 7439935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 184 - 262
Target Start/End: Original strand, 13579575 - 13579653
Alignment:
Q  184 aatactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||||| ||||  || ||||| || |||||| |||| ||| |||| ||||  ||||||||||||||||||||||    
T  13579575 aatactccatccgtctctaagtaataatcatttaaggtttatgcatgattattaaagaaatgattaattgtgttgattt 13579653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 15699269 - 15699208
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaa-tgattaattgtgttgattt 262  Q
    |||||||||||||||||| || | ||||  || ||||||||| |||||||||||||||||||    
T  15699269 aaataatagtcgtttaaggttgatgcacagttattaagaaaaatgattaattgtgttgattt 15699208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 917170 - 917110
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||| ||||||||||||| |||  |||||||| ||||  |||||||||||| |||||||||    
T  917170 aaattatagtcgtttaaggtttgtgcacgattattaaataaatgattaattatgttgattt 917110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 31042959 - 31042883
Alignment:
Q  186 tactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||| || |||| | |||| ||||| |||||| |||  ||| |||| ||||| ||||||||||||||||||||||    
T  31042959 tactccctccgtctcacaatattagtcatttaaggtttgtgcatgattattaaggaaatgattaattgtgttgattt 31042883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 32825964 - 32826023
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||||||||| || | ||||| || ||||| |||||||||| |||||||||||    
T  32825964 aaataatagtcgtttaaggttgatgcacggttattaaggaaatgattaa-tgtgttgattt 32826023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 230 - 262
Target Start/End: Complemental strand, 34332454 - 34332422
Alignment:
Q  230 gatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||||||||| |||||||||||||||||    
T  34332454 gatttttaagaaaataattaattgtgttgattt 34332422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 185 - 262
Target Start/End: Complemental strand, 39482778 - 39482701
Alignment:
Q  185 atactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||| || |||| | |||| ||||||||||||||||  |||||||| ||||||||||||||||||||||||||||    
T  39482778 atactccctccgtctcacaatattagtcgtttaagatttgtgcacgattattaagaaaatgattaattgtgttgattt 39482701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 36967507 - 36967447
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||||||||| |||| |||||||| ||||| ||||||||||||||||||||||    
T  36967507 aaataatagtcgtttaaggtttatgcacgattattaaggaaatgattaattgtgttgattt 36967447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 184 - 262
Target Start/End: Original strand, 40996317 - 40996395
Alignment:
Q  184 aatactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||||| ||||  |||||||| ||||||||| |||| |||| ||| ||||| ||||||||||||||||||||||    
T  40996317 aatactccatccgtctctaaataataatcgtttaaggtttatgcacaattgttaaggaaatgattaattgtgttgattt 40996395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 51258 - 51198
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||| ||||||| |||  |||||||| ||||||||||||||||||||||||||||    
T  51258 aaataatagttgtttaaggtttgtgcacgattattaagaaaatgattaattgtgttgattt 51198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 186 - 262
Target Start/End: Original strand, 45425620 - 45425696
Alignment:
Q  186 tactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||| || |||| | |||| |||||||||||| |||| ||| |||| ||||||||||||||||||||||||||||    
T  45425620 tactccttccgtctcataatattagtcgtttaagttttatgcatgattattaagaaaatgattaattgtgttgattt 45425696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 39405927 - 39405848
Alignment:
Q  183 aaatactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||| |||| | |||| |||||||||||| |||  |||||||| ||||| ||||||||||||||||| ||||    
T  39405927 aaatactccatccgtctcacaatattagtcgtttaaggtttgtgcacgattattaaggaaatgattaattgtgttaattt 39405848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 181 - 262
Target Start/End: Complemental strand, 13335383 - 13335302
Alignment:
Q  181 ttaaatactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||||   |||  |||||||| ||||||||| |||| |||||||| ||||| ||||| ||||||||||||||||    
T  13335383 ttaaatactccattcttctctaaataataatcgtttaaggtttatgcacgattattaaggaaatggttaattgtgttgattt 13335302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 17719228 - 17719280
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgt 254  Q
    ||||||||||||||||||||||  |||||||| |||| |||||||||||||||    
T  17719228 aaataatagtcgtttaagatttgtgcacgattattaaaaaaatgattaattgt 17719280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 32678864 - 32678804
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||||||||  ||||  ||||||| ||||| ||||||||||||||||||||||    
T  32678864 aaataatagtcgtttaaagtttatacacgattattaaggaaatgattaattgtgttgattt 32678804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 6611842 - 6611783
Alignment:
Q  203 aataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||| |||||||||||||||||  ||||||| |||| ||||||||||||| |||||||||    
T  6611842 aatattagtcgtttaagatttacacacgattattaaaaaaatgattaattatgttgattt 6611783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 208 - 259
Target Start/End: Original strand, 26626088 - 26626139
Alignment:
Q  208 tagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttga 259  Q
    |||||||||||| |||| |||||||| ||||| |||||||||||||||||||    
T  26626088 tagtcgtttaaggtttatgcacgattattaaggaaatgattaattgtgttga 26626139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 1875568 - 1875622
Alignment:
Q  208 tagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||| |||  |||||||| ||||| ||||||||||||||||||||||    
T  1875568 tagtcgtttaaggtttgtgcacgattattaaggaaatgattaattgtgttgattt 1875622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 4428321 - 4428381
Alignment:
Q  201 aaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||||||||||||| |||| | |  ||||||||||||||||||| ||||||||||||    
T  4428321 aaaataatagtcgtttaaggtttatgtat-atttttaagaaaatgattatttgtgttgattt 4428381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 29226212 - 29226261
Alignment:
Q  213 gtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||| |||  ||| ||||||||||||||||||||||||||||    
T  29226212 gtttaagatttatgcataattattaagaaaatgattaattgtgttgattt 29226261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 10097961 - 10098021
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||||||||| || | ||| | || |||||||||||||||||||| |||||||    
T  10097961 aaataatagtcgtttaaggttgatgcatggttattaagaaaatgattaattgtattgattt 10098021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 31271167 - 31271107
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||| ||||||||||||| |||  | |||||| |||||||||||||| |||||||||||||    
T  31271167 aaattatagtcgtttaaggtttgtgtacgattattaagaaaatgattgattgtgttgattt 31271107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 34393924 - 34393984
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||||||||  || | ||||| || ||||| ||||||||||||||||||||||    
T  34393924 aaataatagtcgtttaaagttgatgcacggttattaaggaaatgattaattgtgttgattt 34393984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 186 - 262
Target Start/End: Original strand, 34948641 - 34948717
Alignment:
Q  186 tactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||| ||||   ||||||| |||||||||||||   ||| ||| ||||| ||||||||||||||||||||||    
T  34948641 tactccatccgtctttgaataataatcgtttaagatttgtacacaattattaaggaaatgattaattgtgttgattt 34948717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 9300094 - 9300143
Alignment:
Q  213 gtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||| |||| |||||||| ||||||||||||||  ||||||||||||    
T  9300094 gtttaaggtttatgcacgattattaagaaaatgattgtttgtgttgattt 9300143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 262
Target Start/End: Complemental strand, 12559735 - 12559679
Alignment:
Q  205 taatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||||| | |||   ||||||||||||||| |||||||||||||||||||    
T  12559735 taatagtcgtttaaaaattatatacgatttttaagaaa-tgattaattgtgttgattt 12559679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 21216078 - 21216131
Alignment:
Q  209 agtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||||| |||  ||| |||| ||||| ||||||||||||||||||||||    
T  21216078 agtcgtttaaggtttgtgcatgattattaaggaaatgattaattgtgttgattt 21216131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 186 - 262
Target Start/End: Original strand, 7703110 - 7703186
Alignment:
Q  186 tactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||| |||| || |||||||||||||||  |||  | | |||| ||||| |||| |||||||||||||||||    
T  7703110 tactccatccgtcttaacataatagtcgtttaaagtttgtgtaagattattaaggaaataattaattgtgttgattt 7703186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 10179921 - 10179977
Alignment:
Q  206 aatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||||| |||  |||||||| |||||||||||| || |||| |||||||    
T  10179921 aatagtcgtttaaggtttgtgcacgattattaagaaaatgagtagttgtattgattt 10179977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 226 - 262
Target Start/End: Original strand, 42972502 - 42972538
Alignment:
Q  226 gcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||| |||||||||||||||||||| |||||||    
T  42972502 gcacgattattaagaaaatgattaattgttttgattt 42972538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 1850 - 1790
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||||||||||||||  |||| || |||||||||||||||||| |||||||||    
T  1850 aaataatagtcgtttaagatttatacacggttattaagaaaatgattaattatgttgattt 1790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 16463835 - 16463775
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||||||||| |||| ||||| || ||||| ||||||||||||||||||||||    
T  16463835 aaataatagtcgtttaaggtttatgcacggttattaaggaaatgattaattgtgttgattt 16463775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 18853166 - 18853227
Alignment:
Q  201 aaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||||||||| ||||  ||||||| |||||| |||| |||||||||||||||||    
T  18853166 aaaataatagtcgtttaaaatttgtgcacgatctttaaggaaataattaattgtgttgattt 18853227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 201 - 262
Target Start/End: Complemental strand, 19937824 - 19937763
Alignment:
Q  201 aaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||| ||||||||||||| |||  |||||||| ||||| ||||||||||||||||||||||    
T  19937824 aaaattatagtcgtttaaggtttgtgcacgattattaaggaaatgattaattgtgttgattt 19937763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 185 - 262
Target Start/End: Complemental strand, 39785751 - 39785674
Alignment:
Q  185 atactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||| || ||||  |||||||||||||||||| || | ||||| || ||||| ||||||||||||||||||||||    
T  39785751 atactccctccgtctctaaataatagtcgtttaaggttgatgcacggttattaaggaaatgattaattgtgttgattt 39785674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 15359054 - 15359114
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||||||||| || | ||||| || ||||||| ||||||||||||||||||||    
T  15359054 aaataatagtcgtttaaggttgatgcacggttattaagaagatgattaattgtgttgattt 15359114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 17695492 - 17695416
Alignment:
Q  186 tactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||| |||| ||||| ||| ||||||||| |||  |||||||| ||||| |||||||||||||| |||||||    
T  17695492 tactccatccgtctcaaaattataatcgtttaaggtttgtgcacgattattaaggaaatgattaattgtattgattt 17695416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 25637642 - 25637567
Alignment:
Q  186 tactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||| ||||  |||||||||| ||||||| |||| |||||||| | ||| ||||||||||||||||||||||    
T  25637642 tactccatccgtctctaaataatagttgtttaaggtttatgcacgattat-aaggaaatgattaattgtgttgattt 25637567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 36794430 - 36794370
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||||||||||||||| | ||| | || ||||| ||||||||||||||||||||||    
T  36794430 aaataatagtcgtttaagattgatgcatggttattaaggaaatgattaattgtgttgattt 36794370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 39691636 - 39691576
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||| ||| ||||||||| |||  |||||||| ||||||||||||||||||||||||||||    
T  39691636 aaattataatcgtttaaggtttgtgcacgattattaagaaaatgattaattgtgttgattt 39691576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 45235727 - 45235667
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||||||||| |||  |||||||| ||||| |||||||| |||||||||||||    
T  45235727 aaataatagtcgtttaaggtttgtgcacgattattaaggaaatgattgattgtgttgattt 45235667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 191 - 262
Target Start/End: Original strand, 10005081 - 10005151
Alignment:
Q  191 catctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||| ||||||| ||||||||||| |||  |||| |||| |||||||||||| ||||||||||||||    
T  10005081 catctgtctcaaaataacagtcgtttaaggtttgtgcac-atttataagaaaatgatcaattgtgttgattt 10005151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 207 - 262
Target Start/End: Original strand, 31448665 - 31448720
Alignment:
Q  207 atagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||||||| |||  |||||||| ||||| ||||||||||||||||||||||    
T  31448665 atagtcgtttaaggtttgtgcacgattattaaggaaatgattaattgtgttgattt 31448720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 262
Target Start/End: Complemental strand, 37322596 - 37322514
Alignment:
Q  181 ttaaatactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaa-gaaaatgattaattgtgttgattt 262  Q
    |||| |||| |||| ||||  |||| ||||||||||||| |||| |||||||| |||| |||||||||| |||||||||||||    
T  37322596 ttaactacttcatccgtctctaaattatagtcgtttaaggtttatgcacgattattaaggaaaatgattgattgtgttgattt 37322514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 26607946 - 26607995
Alignment:
Q  213 gtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||| |||  |||||||| ||||||||||||||||||||||||||||    
T  26607946 gtttaaggtttgtgcacgattattaagaaaatgattaattgtgttgattt 26607995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 185 - 262
Target Start/End: Original strand, 36354393 - 36354470
Alignment:
Q  185 atactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||| ||||  ||||||||||| |||||| |||| | |||||| ||||| |||||| || ||||||||||||    
T  36354393 atactccatccgtctctaaataatagtcatttaaggtttatgtacgattattaaggaaatgactagttgtgttgattt 36354470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 5272160 - 5272212
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgt 254  Q
    |||||||||||||||||| |||| |||||||| ||||| |||| |||||||||    
T  5272160 aaataatagtcgtttaaggtttacgcacgattattaaggaaataattaattgt 5272212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 34120406 - 34120466
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||  |||||||  |||| ||| |||| ||||||||||||||||||||||||||||    
T  34120406 aaataataaccgtttaaagtttatgcatgattattaagaaaatgattaattgtgttgattt 34120466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 39443875 - 39443799
Alignment:
Q  186 tactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||  ||| | |||| |||||||||||| |||  |||| ||| |||||||||||||||||| |||||||||    
T  39443875 tactccatccatcttataatattagtcgtttaaggtttgtgcacaattattaagaaaatgattaattttgttgattt 39443799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 3323254 - 3323313
Alignment:
Q  203 aataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||| |||||||||||| |||  |||||||| |||  |||||||||||||||||||||||    
T  3323254 aatattagtcgtttaaggtttgtgcacgattattataaaaatgattaattgtgttgattt 3323313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 211 - 261
Target Start/End: Original strand, 16377632 - 16377682
Alignment:
Q  211 tcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgatt 261  Q
    |||||||||||||  |||||||| ||||  |||||||||||||||||||||    
T  16377632 tcgtttaagatttgtgcacgattattaaagaaatgattaattgtgttgatt 16377682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 185 - 262
Target Start/End: Original strand, 41220895 - 41220973
Alignment:
Q  185 atactccatctgtctgaaaataatagtcgtttaaga-tttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||| |||| |||| | ||||||||||| |||| | |||| | ||||||||||| || ||||||||||||||||||||    
T  41220895 atacttcatccgtctcacaataatagtcgcttaaaaatttatgtacgatttttaaaaacatgattaattgtgttgattt 41220973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 35314054 - 35313973
Alignment:
Q  182 taaatactccatctgtctgaaaataatagtcgtttaag-atttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||  ||| |||| | |||| |||||||||||  ||| | |||||||| ||||| ||||||||||||||||||||||    
T  35314054 taaatactttatccgtctcacaatattagtcgtttaaatattgatgcacgattattaaggaaatgattaattgtgttgattt 35313973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 230 - 262
Target Start/End: Complemental strand, 15435489 - 15435457
Alignment:
Q  230 gatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||||||||| |||||||||||||||||    
T  15435489 gatttttaagaaaataattaattgtgttgattt 15435457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 206 - 262
Target Start/End: Complemental strand, 16806023 - 16805967
Alignment:
Q  206 aatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||| ||||||| |||  |||||||| ||||  ||||||||||||||||||||||    
T  16806023 aatagtagtttaaggtttgtgcacgattattaaagaaatgattaattgtgttgattt 16805967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 206 - 262
Target Start/End: Complemental strand, 16845304 - 16845248
Alignment:
Q  206 aatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||| ||||||| |||  |||||||| ||||  ||||||||||||||||||||||    
T  16845304 aatagtagtttaaggtttgtgcacgattattaaagaaatgattaattgtgttgattt 16845248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 32783510 - 32783450
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||| || |||||| || | ||||| || ||||||||||||||||||||||| ||||    
T  32783510 aaataataatcatttaaggttgatgcacggttattaagaaaatgattaattgtgtttattt 32783450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 50369 - 50290
Alignment:
Q  183 aaatactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||||| |||| | |||| |||||||||||| |||  |||||||| ||||| ||||||||||||||||| ||||    
T  50369 aaatactccatccgtctcacaatattagtcgtttaaggtttgtgcacgattattaaggaaatgattaattgtgttaattt 50290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 17197 - 17121
Alignment:
Q  186 tactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||||  ||| | |||| |||||||||||| |||  ||| |||| ||||||||||||||||||||||||||||    
T  17197 tactccatccatctaacaatattagtcgtttaaggtttgtgcatgattattaagaaaatgattaattgtgttgattt 17121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 1130 - 1071
Alignment:
Q  203 aataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||| |||||||||||||||||  ||||||| |||| ||||||||||||| |||||||||    
T  1130 aatattagtcgtttaagatttacacacgattattaaaaaaatgattaattatgttgattt 1071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1391 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold1391
Description:

Target: scaffold1391; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 1786 - 1846
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||||  |||||  |||| |||||||| |||||||||| |||||||||||||||||    
T  1786 aaataatagttctttaaagtttatgcacgattattaagaaaataattaattgtgttgattt 1846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 186 - 262
Target Start/End: Original strand, 135990 - 136066
Alignment:
Q  186 tactccatctgtctgaaaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||| || |||| | |||| ||||||||||||||||| |||||||| ||||  |||||||||||  |||||||||    
T  135990 tactccctccgtctcacaatattagtcgtttaagatttatgcacgattattaaataaatgattaataatgttgattt 136066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 39234 - 39174
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||||| ||||||||| |||  |||| ||| ||||| ||||||||||||||||||||||    
T  39234 aaataataatcgtttaaggtttttgcacaattattaaggaaatgattaattgtgttgattt 39174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 16243 - 16184
Alignment:
Q  203 aataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||| |||| |||||||||||   ||||||| ||||| ||||||||||||||||||||||    
T  16243 aatattagtagtttaagatttgttcacgattattaaggaaatgattaattgtgttgattt 16184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 212 - 262
Target Start/End: Complemental strand, 105820 - 105770
Alignment:
Q  212 cgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    ||||||||||||| ||| |||| ||||| ||||||||||||||||| ||||    
T  105820 cgtttaagatttatgcatgattattaagtaaatgattaattgtgtttattt 105770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 6260 - 6313
Alignment:
Q  208 tagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgatt 261  Q
    |||||||||||  |||  |||||||||||||  |||||||||||||||||||||    
T  6260 tagtcgtttaaagtttgtgcacgatttttaacgaaatgattaattgtgttgatt 6313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 263
Target Start/End: Original strand, 7950 - 8011
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgatttg 263  Q
    |||||||||||||||| | || | ||||| || ||||| |||||||||||| ||||||||||    
T  7950 aaataatagtcgtttacggttgatgcacggttattaaggaaatgattaattttgttgatttg 8011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0583 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0583
Description:

Target: scaffold0583; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 2171 - 2111
Alignment:
Q  202 aaataatagtcgtttaagatttaagcacgatttttaagaaaatgattaattgtgttgattt 262  Q
    |||||| ||||||||||| || | |||||||| ||||| || |||||||||||||| ||||    
T  2171 aaataaaagtcgtttaaggttcatgcacgattattaaggaagtgattaattgtgttaattt 2111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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